prot_S-dermatodea_contig8836.16962.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8836.16962.1
Unique Nameprot_S-dermatodea_contig8836.16962.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length201
Homology
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A6H5KLH5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLH5_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 3.780e-72
Identity = 135/228 (59.21%), Postives = 153/228 (67.11%), Query Frame = 0
Query:    1 MCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTVA-----------------------KLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGR----RSHGGGGSGPG-------GRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWGELCGTEVVSEGF 194
            MC+ARTSKAAARLSA+FRARDGVEKIYHAVV G L+G G R+DFL SP  SGA   R GRGPRT ++                       KLA LEWEAI +SPS +  LRCPRTG+PRTLVR+RL+TGRKHQIRVQLAEMGHPVVGD RYGR    +S GG  +          G  + LEDRSILLHASEL +PHPTR   +VR VA PP  W +LCG   + E F
Sbjct:  108 MCVARTSKAAARLSASFRARDGVEKIYHAVVAGGLAGRGIRQDFLVSPDASGAV-ARRGRGPRTGLSSAPVRGGAGGRLLAAGPTSSSEGKLAQLEWEAIDVSPSSADRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSSWCQSRGGDATDESAVPPPRAGSMEPLEDRSILLHASELIVPHPTRVGAMVRAVAAPPGMWSDLCGRSCIDEVF 334          
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: D8LGZ5_ECTSI (23S RNA-specific pseudouridylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ5_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 3.000e-70
Identity = 132/225 (58.67%), Postives = 148/225 (65.78%), Query Frame = 0
Query:    1 MCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTVA-----------------------KLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPG--------GRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWGELCGTEVVSEGF 194
            MC+ARTSKAAARLSA+FRARD VEKIYHAVV G L+G G R+D L SP  SGA   R GRGPR  ++                       KLA LEWEAI +S S +  LRCPRTG+PRTLVR+RL+TGRKHQIRVQLAEMGHPVVGD RYGR S GG  +           GR + LEDRSILLHASEL +PHPTR    VR VA PP  W +LCG   + E F
Sbjct:    1 MCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAV-ARRGRGPRAGLSSVPARGGAGGRLLAAGPTSSPDGKLAQLEWEAINVSSSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGR-SRGGDATDESAVPPPRRAGRIEPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMWSDLCGRSCIDEVF 223          
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A848XZP8_9BACT (RNA pseudouridine synthase n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A848XZP8_9BACT)

HSP 1 Score: 102 bits (253), Expect = 2.760e-23
Identity = 74/181 (40.88%), Postives = 96/181 (53.04%), Query Frame = 0
Query:    1 MCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTVAKLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESW 181
            M +ARTSKAA RLS  FR R  VEK Y A+V G++SG+G R+D+L      G   +     P+    K AVL W+A+      S             LV ++L+TGR HQ+RVQLA +G P++GD RYG                 L+ R++ LHA  LA  HP R E +V   APPP SW
Sbjct:   65 MVLARTSKAAGRLSKAFRERR-VEKRYLALVEGRMSGAGEREDYLLKE--DGRVRIVSADHPK---GKRAVLRWQALGEEGRLS-------------LVEVKLLTGRAHQVRVQLAALGTPILGDFRYGATRE-------------LDGRNLALHAYRLAFEHPVRREPLV-FTAPPPVSW 212          
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A5S9IDS9_RHOMR (RNA pseudouridine synthase n=4 Tax=Rhodothermus marinus TaxID=29549 RepID=A0A5S9IDS9_RHOMR)

HSP 1 Score: 98.2 bits (243), Expect = 1.180e-21
Identity = 81/189 (42.86%), Postives = 99/189 (52.38%), Query Frame = 0
Query:    1 MCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTV------AKLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWGE 183
            M +ARTSKAAARL   FR R  VEK+Y A+V G+L GSGT +DF+A             R     V       K AVL W+A+    +R+ L          TL+RL   TGRKHQIRVQLA  G+P++GD RY  R           RW  L    + LHA +LAL HPTR E + +  AP P  W E
Sbjct:   71 MVLARTSKAAARLMQQFRERT-VEKVYLALVEGELEGSGTWEDFMAPA-----------RDHMRLVPEDHPFGKRAVLHWQALM---TRNGL----------TLMRLVPETGRKHQIRVQLAFRGYPILGDRRYRAR-----------RW--LAPGQMALHAWKLALTHPTRRERM-QWTAPVPPFWDE 220          
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A1V0DAH3_9BACT (RNA pseudouridine synthase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1V0DAH3_9BACT)

HSP 1 Score: 97.8 bits (242), Expect = 1.400e-21
Identity = 77/190 (40.53%), Postives = 95/190 (50.00%), Query Frame = 0
Query:    1 MCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTV-------AKLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWGE 183
            M +ARTSKAA RLS  FR R   EK Y A+V G+L+G GT  D LA             R     V       A+ AVL+W+A+A             TG   TLV + L TGR HQIRVQ A  GHP++GDVRYG R               L+ R + LH+  LA+ HPT  E +    +PPP SW +
Sbjct:   67 MVLARTSKAARRLSQQFRERTP-EKRYLALVEGRLAGRGTWVDHLAK------------RNRHVHVVHAGAEDARRAVLDWQALA------------STGGC-TLVEVALHTGRAHQIRVQCAHRGHPILGDVRYGARR-------------VLDGRHLALHSYRLAIDHPTTKERMAWSASPPP-SWAQ 216          
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A271J2Z8_9BACT (PseudoU_synth_2 domain-containing protein n=1 Tax=Rubrivirga marina TaxID=1196024 RepID=A0A271J2Z8_9BACT)

HSP 1 Score: 97.1 bits (240), Expect = 2.640e-21
Identity = 75/187 (40.11%), Postives = 94/187 (50.27%), Query Frame = 0
Query:    1 MCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGT---RKDFLASPGGSGAGGVRGGRGPRTTVAKLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWGEL 184
            M +ARTSKAA+RLS  FR R   +K Y AVV G     G    R D +   GG     V  G G R      A L +  +A   +RS             LV + L+TGRKHQIR QLAE+G P++GD RYG ++               + R + LHA  L + HPT+  E V VVAPPPE+W  L
Sbjct:   65 MMLARTSKAASRLSDQFRRRVP-QKRYLAVVEGDPGDGGAWTERVDAIDKGGGGSVDVVPVGEGQR------AALRYRTLARDSARS-------------LVEVELLTGRKHQIRAQLAELGAPILGDFRYGNQT------------PFADGRGVALHAYRLVVEHPTK-REPVTVVAPPPEAWAGL 218          
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: UPI001420CA78 (RNA pseudouridine synthase n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI001420CA78)

HSP 1 Score: 96.3 bits (238), Expect = 5.090e-21
Identity = 76/187 (40.64%), Postives = 96/187 (51.34%), Query Frame = 0
Query:    1 MCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTVA-----KLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWG 182
            M +ARTSKAAARLS  FR R   EK Y A+V G  +G+GT  D L          V+ GR  R   A     + A L W  +A   +           +  +LV +RL TGR HQ+RVQLA  GHP++GD RYG        S P      L+ R++ LHA  L + HPTR    +  VAPPP +WG
Sbjct:   67 MVLARTSKAAARLSDQFRRRLP-EKRYLALVEGVWTGAGTAVDHL----------VKAGRTVRVVPATHPGARRAELAWRVLATDEA-----------ERLSLVEVRLETGRPHQVRVQLAHRGHPLLGDFRYGA-------SRP------LDGRNLALHAYRLGIEHPTR-RVPMHWVAPPPAAWG 217          
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A800M4B4_9BACT (RluA family pseudouridine synthase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A800M4B4_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 1.150e-20
Identity = 79/186 (42.47%), Postives = 96/186 (51.61%), Query Frame = 0
Query:    1 MCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPR----TTVAKLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWG 182
            M IARTSKAA+RL+  FR R   EK Y A+V G+L GSG   D+L           RG R  R    T  AK AV+ W       SRS L         R+LV + L TGR HQIRVQL+ +GHP+VGD+RYG  +  G G            R I LHA+ L + HPT+ +      APP   WG
Sbjct:   67 MVIARTSKAASRLAEQFRQRTP-EKRYLAMVEGRLDGSGRETDWLLKT----RDPKRGTRVKRVRQGTDGAKRAVMTWT------SRSVL-------GTRSLVEVGLETGRAHQIRVQLSGLGHPIVGDLRYGAEAPLGDG------------RGIALHATHLTIEHPTKRDRRTFTSAPP-RVWG 221          
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A1M6P7L7_9BACT (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Rhodothermus profundi TaxID=633813 RepID=A0A1M6P7L7_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 1.750e-20
Identity = 80/187 (42.78%), Postives = 97/187 (51.87%), Query Frame = 0
Query:    1 MCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTVA------KLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESW 181
            M +ARTSKAAARL   FR R  VEKIY A+V G+L G G  +DF+A             R     V+      K AVL WEA+    +R+ L          TLVRL   TGRKHQIRVQLA  G+PV+GD RY  R           RW  L    + LHA +L++ HPTR E + +  AP P  W
Sbjct:   71 MVLARTSKAAARLMQQFRERT-VEKIYLALVEGELEGEGVWEDFIAPA-----------RDHMRLVSADHPWGKRAVLRWEALM---TRNGL----------TLVRLIPETGRKHQIRVQLAFRGYPVLGDRRYRAR-----------RW--LAPGQMALHAWKLSVTHPTRRERM-QWTAPVPSCW 218          
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A3M1NPK6_9BACT (RNA pseudouridine synthase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1NPK6_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 1.880e-20
Identity = 77/187 (41.18%), Postives = 92/187 (49.20%), Query Frame = 0
Query:    1 MCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTVA-----KLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWG 182
            M +ARTSKAAARLS  FR R   EK Y A+V G   G+GT  D L          ++ GR  R   A     K A L W  +  S  R SL            V +RL TGR HQIRVQLA  GHP++GD+RYG R                + R++ LH+  L L HPTR   +   V PPP SWG
Sbjct:   67 MVLARTSKAAARLSEQFR-RHSPEKRYLALVEGAWDGNGTAVDHL----------LKVGRTVRVVPATHPGGKRAELAWRVLG-SDGRVSL------------VEVRLTTGRPHQIRVQLAHRGHPLLGDLRYGARQ-------------PFDGRNLALHSWYLGLEHPTRRVAMAWHVPPPP-SWG 215          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLH5_9PHAE3.780e-7259.21PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
D8LGZ5_ECTSI3.000e-7058.6723S RNA-specific pseudouridylate synthase n=1 Tax=... [more]
A0A848XZP8_9BACT2.760e-2340.88RNA pseudouridine synthase n=1 Tax=Rhodothermaceae... [more]
A0A5S9IDS9_RHOMR1.180e-2142.86RNA pseudouridine synthase n=4 Tax=Rhodothermus ma... [more]
A0A1V0DAH3_9BACT1.400e-2140.53RNA pseudouridine synthase n=2 Tax=Bacteroidetes T... [more]
A0A271J2Z8_9BACT2.640e-2140.11PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
UPI001420CA785.090e-2140.64RNA pseudouridine synthase n=1 Tax=Rhodocaloribact... [more]
A0A800M4B4_9BACT1.150e-2042.47RluA family pseudouridine synthase n=1 Tax=Bactero... [more]
A0A1M6P7L7_9BACT1.750e-2042.78Ribosomal large subunit pseudouridine synthase D n... [more]
A0A3M1NPK6_9BACT1.880e-2041.18RNA pseudouridine synthase n=1 Tax=Bacteroidetes b... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006145Pseudouridine synthase, RsuA/RluAPFAMPF00849PseudoU_synth_2coord: 1..116
e-value: 2.1E-12
score: 47.4
NoneNo IPR availableGENE3D3.30.2350.10coord: 1..176
e-value: 9.5E-30
score: 105.7
NoneNo IPR availablePANTHERPTHR21600RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE Bcoord: 1..181
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 1..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8836contigS-dermatodea_contig8836:4335..5183 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8836.16962.1mRNA_S-dermatodea_contig8836.16962.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8836 4320..6003 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8836.16962.1 ID=prot_S-dermatodea_contig8836.16962.1|Name=mRNA_S-dermatodea_contig8836.16962.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=201bp
MCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGG
SGAGGVRGGRGPRTTVAKLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVR
LRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDR
SILLHASELALPHPTRPEEVVRVVAPPPESWGELCGTEVVSEGFAGRRGW
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006145PsdUridine_synth_RsuA/RluA
IPR020103PsdUridine_synth_cat_dom_sf