mRNA_S-dermatodea_contig8836.16962.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A6H5KLH5_9PHAE (PseudoU_synth_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLH5_9PHAE) HSP 1 Score: 239 bits (609), Expect = 3.300e-71 Identity = 139/233 (59.66%), Postives = 157/233 (67.38%), Query Frame = 1
Query: 1 PVSGAMCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTVA-----------------------KLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGR----RSHGGGGSGPG-------GRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWGELCGTEVVSEGF 597
PVSG MC+ARTSKAAARLSA+FRARDGVEKIYHAVV G L+G G R+DFL SP SGA R GRGPRT ++ KLA LEWEAI +SPS + LRCPRTG+PRTLVR+RL+TGRKHQIRVQLAEMGHPVVGD RYGR +S GG + G + LEDRSILLHASEL +PHPTR +VR VA PP W +LCG + E F
Sbjct: 103 PVSGVMCVARTSKAAARLSASFRARDGVEKIYHAVVAGGLAGRGIRQDFLVSPDASGAV-ARRGRGPRTGLSSAPVRGGAGGRLLAAGPTSSSEGKLAQLEWEAIDVSPSSADRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGRSSWCQSRGGDATDESAVPPPRAGSMEPLEDRSILLHASELIVPHPTRVGAMVRAVAAPPGMWSDLCGRSCIDEVF 334
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: D8LGZ5_ECTSI (23S RNA-specific pseudouridylate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ5_ECTSI) HSP 1 Score: 223 bits (568), Expect = 1.520e-66 Identity = 132/225 (58.67%), Postives = 148/225 (65.78%), Query Frame = 1
Query: 16 MCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTVA-----------------------KLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPG--------GRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWGELCGTEVVSEGF 597
MC+ARTSKAAARLSA+FRARD VEKIYHAVV G L+G G R+D L SP SGA R GRGPR ++ KLA LEWEAI +S S + LRCPRTG+PRTLVR+RL+TGRKHQIRVQLAEMGHPVVGD RYGR S GG + GR + LEDRSILLHASEL +PHPTR VR VA PP W +LCG + E F
Sbjct: 1 MCVARTSKAAARLSASFRARDDVEKIYHAVVAGSLAGRGIRQDLLVSPDASGAV-ARRGRGPRAGLSSVPARGGAGGRLLAAGPTSSPDGKLAQLEWEAINVSSSSAVRLRCPRTGNPRTLVRVRLITGRKHQIRVQLAEMGHPVVGDTRYGR-SRGGDATDESAVPPPRRAGRIEPLEDRSILLHASELIVPHPTRVGATVRAVAAPPGMWSDLCGRSCIDEVF 223
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A848XZP8_9BACT (RNA pseudouridine synthase n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A848XZP8_9BACT) HSP 1 Score: 109 bits (273), Expect = 6.230e-24 Identity = 78/186 (41.94%), Postives = 100/186 (53.76%), Query Frame = 1
Query: 1 PVSGAMCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTVAKLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESW 558
PVSG M +ARTSKAA RLS FR R VEK Y A+V G++SG+G R+D+L G + P+ K AVL W+A+ S LV ++L+TGR HQ+RVQLA +G P++GD RYG L+ R++ LHA LA HP R E +V APPP SW
Sbjct: 60 PVSGVMVLARTSKAAGRLSKAFRERR-VEKRYLALVEGRMSGAGEREDYLLKE--DGRVRIVSADHPK---GKRAVLRWQALGEEGRLS-------------LVEVKLLTGRAHQVRVQLAALGTPILGDFRYGATRE-------------LDGRNLALHAYRLAFEHPVRREPLV-FTAPPPVSW 212
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A5S9IDS9_RHOMR (RNA pseudouridine synthase n=4 Tax=Rhodothermus marinus TaxID=29549 RepID=A0A5S9IDS9_RHOMR) HSP 1 Score: 105 bits (263), Expect = 2.220e-22 Identity = 85/194 (43.81%), Postives = 103/194 (53.09%), Query Frame = 1
Query: 1 PVSGAMCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTV------AKLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWGE 564
PVSG M +ARTSKAAARL FR R VEK+Y A+V G+L GSGT +DF+A R V K AVL W+A+ +R+ L TL+RL TGRKHQIRVQLA G+P++GD RY R RW L + LHA +LAL HPTR E + + AP P W E
Sbjct: 66 PVSGVMVLARTSKAAARLMQQFRERT-VEKVYLALVEGELEGSGTWEDFMAPA-----------RDHMRLVPEDHPFGKRAVLHWQALM---TRNGL----------TLMRLVPETGRKHQIRVQLAFRGYPILGDRRYRAR-----------RW--LAPGQMALHAWKLALTHPTRRERM-QWTAPVPPFWDE 220
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A1V0DAH3_9BACT (RNA pseudouridine synthase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1V0DAH3_9BACT) HSP 1 Score: 103 bits (258), Expect = 9.040e-22 Identity = 80/195 (41.03%), Postives = 98/195 (50.26%), Query Frame = 1
Query: 1 PVSGAMCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTV-------AKLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWGE 564
P SG M +ARTSKAA RLS FR R EK Y A+V G+L+G GT D LA R V A+ AVL+W+A+A TG TLV + L TGR HQIRVQ A GHP++GDVRYG R L+ R + LH+ LA+ HPT E + +PPP SW +
Sbjct: 62 PASGVMVLARTSKAARRLSQQFRERTP-EKRYLALVEGRLAGRGTWVDHLAK------------RNRHVHVVHAGAEDARRAVLDWQALA------------STGGC-TLVEVALHTGRAHQIRVQCAHRGHPILGDVRYGARR-------------VLDGRHLALHSYRLAIDHPTTKERMAWSASPPP-SWAQ 216
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A271J2Z8_9BACT (PseudoU_synth_2 domain-containing protein n=1 Tax=Rubrivirga marina TaxID=1196024 RepID=A0A271J2Z8_9BACT) HSP 1 Score: 103 bits (256), Expect = 1.630e-21 Identity = 78/192 (40.62%), Postives = 97/192 (50.52%), Query Frame = 1
Query: 1 PVSGAMCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGT---RKDFLASPGGSGAGGVRGGRGPRTTVAKLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWGEL 567
P SG M +ARTSKAA+RLS FR R +K Y AVV G G R D + GG V G G R A L + +A +RS LV + L+TGRKHQIR QLAE+G P++GD RYG ++ + R + LHA L + HPT+ E V VVAPPPE+W L
Sbjct: 60 PASGVMMLARTSKAASRLSDQFRRRVP-QKRYLAVVEGDPGDGGAWTERVDAIDKGGGGSVDVVPVGEGQR------AALRYRTLARDSARS-------------LVEVELLTGRKHQIRAQLAELGAPILGDFRYGNQT------------PFADGRGVALHAYRLVVEHPTK-REPVTVVAPPPEAWAGL 218
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A800M4B4_9BACT (RluA family pseudouridine synthase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A800M4B4_9BACT) HSP 1 Score: 103 bits (256), Expect = 1.860e-21 Identity = 83/191 (43.46%), Postives = 100/191 (52.36%), Query Frame = 1
Query: 1 PVSGAMCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPR----TTVAKLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWG 561
PV GAM IARTSKAA+RL+ FR R EK Y A+V G+L GSG D+L RG R R T AK AV+ W SRS L R+LV + L TGR HQIRVQL+ +GHP+VGD+RYG + G G R I LHA+ L + HPT+ + APP WG
Sbjct: 62 PVGGAMVIARTSKAASRLAEQFRQRTP-EKRYLAMVEGRLDGSGRETDWLLKT----RDPKRGTRVKRVRQGTDGAKRAVMTWT------SRSVL-------GTRSLVEVGLETGRAHQIRVQLSGLGHPIVGDLRYGAEAPLGDG------------RGIALHATHLTIEHPTKRDRRTFTSAPP-RVWG 221
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A1M6P7L7_9BACT (Ribosomal large subunit pseudouridine synthase D n=1 Tax=Rhodothermus profundi TaxID=633813 RepID=A0A1M6P7L7_9BACT) HSP 1 Score: 102 bits (255), Expect = 2.780e-21 Identity = 84/192 (43.75%), Postives = 101/192 (52.60%), Query Frame = 1
Query: 1 PVSGAMCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTVA------KLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESW 558
PVSG M +ARTSKAAARL FR R VEKIY A+V G+L G G +DF+A R V+ K AVL WEA+ +R+ L TLVRL TGRKHQIRVQLA G+PV+GD RY R RW L + LHA +L++ HPTR E + + AP P W
Sbjct: 66 PVSGVMVLARTSKAAARLMQQFRERT-VEKIYLALVEGELEGEGVWEDFIAPA-----------RDHMRLVSADHPWGKRAVLRWEALM---TRNGL----------TLVRLIPETGRKHQIRVQLAFRGYPVLGDRRYRAR-----------RW--LAPGQMALHAWKLSVTHPTRRERM-QWTAPVPSCW 218
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: UPI001420CA78 (RNA pseudouridine synthase n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI001420CA78) HSP 1 Score: 102 bits (254), Expect = 2.990e-21 Identity = 79/192 (41.15%), Postives = 99/192 (51.56%), Query Frame = 1
Query: 1 PVSGAMCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTVA-----KLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWG 561
P SG M +ARTSKAAARLS FR R EK Y A+V G +G+GT D L V+ GR R A + A L W +A + + +LV +RL TGR HQ+RVQLA GHP++GD RYG S P L+ R++ LHA L + HPTR + VAPPP +WG
Sbjct: 62 PASGVMVLARTSKAAARLSDQFRRRLP-EKRYLALVEGVWTGAGTAVDHL----------VKAGRTVRVVPATHPGARRAELAWRVLATDEA-----------ERLSLVEVRLETGRPHQVRVQLAHRGHPLLGDFRYGA-------SRP------LDGRNLALHAYRLGIEHPTR-RVPMHWVAPPPAAWG 217
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Match: A0A3M1NPK6_9BACT (RNA pseudouridine synthase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1NPK6_9BACT) HSP 1 Score: 100 bits (250), Expect = 1.010e-20 Identity = 80/192 (41.67%), Postives = 95/192 (49.48%), Query Frame = 1
Query: 1 PVSGAMCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGSGAGGVRGGRGPRTTVA-----KLAVLEWEAIALSPSRSSLLRCPRTGDPRTLVRLRLVTGRKHQIRVQLAEMGHPVVGDVRYGRRSHGGGGSGPGGRWDALEDRSILLHASELALPHPTRPEEVVRVVAPPPESWG 561
P SG M +ARTSKAAARLS FR R EK Y A+V G G+GT D L ++ GR R A K A L W + S R SL V +RL TGR HQIRVQLA GHP++GD+RYG R + R++ LH+ L L HPTR + V PPP SWG
Sbjct: 62 PASGVMVLARTSKAAARLSEQFR-RHSPEKRYLALVEGAWDGNGTAVDHL----------LKVGRTVRVVPATHPGGKRAELAWRVLG-SDGRVSL------------VEVRLTTGRPHQIRVQLAHRGHPLLGDLRYGARQ-------------PFDGRNLALHSWYLGLEHPTRRVAMAWHVPPPP-SWG 215 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8836.16962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8836.16962.1 >prot_S-dermatodea_contig8836.16962.1 ID=prot_S-dermatodea_contig8836.16962.1|Name=mRNA_S-dermatodea_contig8836.16962.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=201bp MCIARTSKAAARLSATFRARDGVEKIYHAVVHGQLSGSGTRKDFLASPGGback to top mRNA from alignment at S-dermatodea_contig8836:4320..6003+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8836.16962.1 ID=mRNA_S-dermatodea_contig8836.16962.1|Name=mRNA_S-dermatodea_contig8836.16962.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1684bp|location=Sequence derived from alignment at S-dermatodea_contig8836:4320..6003+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8836:4320..6003+ >mRNA_S-dermatodea_contig8836.16962.1 ID=mRNA_S-dermatodea_contig8836.16962.1|Name=mRNA_S-dermatodea_contig8836.16962.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at S-dermatodea_contig8836:4320..6003+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |