prot_S-dermatodea_contig85748.16734.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig85748.16734.1
Unique Name	prot_S-dermatodea_contig85748.16734.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	101

Homology

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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A8F0F862_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F862_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 3.570e-66
Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 0

Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT 100
            LDNWSYR ISLGFPLLTIGIIAGA+WANEAWGSYWSWDPKETWALITWL+FAAYLHVRLI+GWSGK PAILAS GFFVVWICYLGVNFLGQGLH+YGWL+
Sbjct:  230 LDNWSYRTISLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHVRLIVGWSGKGPAILASLGFFVVWICYLGVNFLGQGLHTYGWLS 329

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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A2I4Q2E4_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E4_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 3.940e-64
Identity = 88/100 (88.00%), Postives = 95/100 (95.00%), Query Frame = 0

Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT 100
            LDNWSY+ ISLGFPLLTIGIIAGA+WANEAWGSYWSWDPKETWALITWL+FAAYLH+RLI GWSGK PAILAS GFF +W+CYLGVNFLGQGLHSYGWL+
Sbjct:  209 LDNWSYKMISLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHIRLIKGWSGKGPAILASLGFFFIWVCYLGVNFLGQGLHSYGWLS 308

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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A8F0FAP1_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP1_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 5.890e-64
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 0

Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT 100
            LDNW YR ISLGFP LTIGIIAGA+WANEAWGSYWSWDPKETWALITWLIFAAYLH+RLI GW GK PAILAS GFFVVWICYLGVNFLGQGLHSYGWLT
Sbjct:  226 LDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHLRLIKGWVGKGPAILASIGFFVVWICYLGVNFLGQGLHSYGWLT 325

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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A516ICR2_9PHAE (Cytochrome c biogenesis protein CcsA n=27 Tax=Laminariales TaxID=2886 RepID=A0A516ICR2_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 9.070e-64
Identity = 89/100 (89.00%), Postives = 96/100 (96.00%), Query Frame = 0

Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT 100
            +DNWSYRAISLGFP LTIGIIAGA+WANEAWGSYWSWDPKETWALITWLIFAAYLH+RLI+G +GK+PA+LAS GFFVVWICYLGVNFLGQGLHSYGW T
Sbjct:  229 IDNWSYRAISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHLRLIVGLNGKKPALLASIGFFVVWICYLGVNFLGQGLHSYGWFT 328

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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A8F0F9V5_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9V5_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 9.070e-64
Identity = 89/100 (89.00%), Postives = 96/100 (96.00%), Query Frame = 0

Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT 100
            +DNWSYRAISLGFP LTIGIIAGA+WANEAWGSYWSWDPKETWALITWLIFAAYLH+RLI+G +GK+PA+LAS GFFVVWICYLGVNFLGQGLHSYGW T
Sbjct:  229 IDNWSYRAISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHLRLIVGLNGKKPALLASIGFFVVWICYLGVNFLGQGLHSYGWFT 328

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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A8E5XRE0_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRE0_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 3.670e-63
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 0

Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWL 99
            LDNWSYR ISLGFP LTIGIIAGA+WANEAWGSYWSWDPKETWALITWL+FAAYLHVRLI GW G++PA+L S GFFVVWICYLGVNFLGQGLHSYGWL
Sbjct:  217 LDNWSYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHVRLIKGWDGEKPAMLGSIGFFVVWICYLGVNFLGQGLHSYGWL 315

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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A7S6U9V9_9STRA (Cytochrome c biogenesis protein CcsA n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V9_9STRA)

HSP 1 Score: 201 bits (510), Expect = 6.000e-62
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 0

Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT 100
            +D WSYR ISLGFP LTIGIIAGA+WANEAWGSYWSWDPKETWALITWLIFAAYLH+RLI GW GK PA LAS GFFVVWICYLGVNFLGQGLHSYGWL+
Sbjct:  255 IDIWSYRIISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHIRLIKGWHGKRPAFLASIGFFVVWICYLGVNFLGQGLHSYGWLS 354

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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A8F8SQQ5_9MARC (Cytochrome c biogenesis protein CcsA n=3 Tax=Marchantiophyta TaxID=3195 RepID=A0A8F8SQQ5_9MARC)

HSP 1 Score: 196 bits (499), Expect = 1.050e-60
Identity = 83/99 (83.84%), Postives = 92/99 (92.93%), Query Frame = 0

Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWL 99
            LDNWSYR ISLGFPLLTIGI++GA+WANEAWGSYW+WDPKETWALITWLIFA YLH R+I GW GK+PAI+AS GFF+VWICYLGVN LG+GLHSYGWL
Sbjct:  220 LDNWSYRVISLGFPLLTIGILSGAVWANEAWGSYWNWDPKETWALITWLIFAIYLHTRMIKGWQGKKPAIIASLGFFIVWICYLGVNLLGKGLHSYGWL 318

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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: CCSA_MARPO (Cytochrome c biogenesis protein CcsA n=8 Tax=Marchantiales TaxID=28908 RepID=CCSA_MARPO)

HSP 1 Score: 196 bits (499), Expect = 1.070e-60
Identity = 83/99 (83.84%), Postives = 92/99 (92.93%), Query Frame = 0

Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWL 99
            LDNWSYR ISLGFPLLTIGI++GA+WANEAWGSYW+WDPKETWALITWLIFA YLH R+I GW GK+PAI+AS GFF+VWICYLGVN LG+GLHSYGWL
Sbjct:  221 LDNWSYRVISLGFPLLTIGILSGAVWANEAWGSYWNWDPKETWALITWLIFAIYLHTRMIKGWQGKKPAIIASLGFFIVWICYLGVNLLGKGLHSYGWL 319

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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A8F3BEN9_9MARC (Cytochrome c biogenesis protein CcsA n=1 Tax=Lunularia cruciata TaxID=56931 RepID=A0A8F3BEN9_9MARC)

HSP 1 Score: 196 bits (499), Expect = 1.070e-60
Identity = 83/99 (83.84%), Postives = 92/99 (92.93%), Query Frame = 0

Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWL 99
            LDNWSYR ISLGFPLLTIGI++GA+WANEAWGSYW+WDPKETWALITWLIFA YLH R+I GW GK+PAI+AS GFF+VWICYLGVN LG+GLHSYGWL
Sbjct:  221 LDNWSYRVISLGFPLLTIGILSGAVWANEAWGSYWNWDPKETWALITWLIFAIYLHTRMIKGWQGKKPAIIASLGFFIVWICYLGVNLLGKGLHSYGWL 319

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A8F0F862_9PHAE	3.570e-66	92.00	Cytochrome c biogenesis protein CcsA n=1 Tax=Proto...	[more]
A0A2I4Q2E4_9PHAE	3.940e-64	88.00	Cytochrome c biogenesis protein CcsA n=1 Tax=Dicty...	[more]
A0A8F0FAP1_9PHAE	5.890e-64	91.00	Cytochrome c biogenesis protein CcsA n=1 Tax=Desma...	[more]
A0A516ICR2_9PHAE	9.070e-64	89.00	Cytochrome c biogenesis protein CcsA n=27 Tax=Lami...	[more]
A0A8F0F9V5_9PHAE	9.070e-64	89.00	Cytochrome c biogenesis protein CcsA n=1 Tax=Chord...	[more]
A0A8E5XRE0_9PHAE	3.670e-63	88.89	Cytochrome c biogenesis protein CcsA n=1 Tax=Ishig...	[more]
A0A7S6U9V9_9STRA	6.000e-62	88.00	Cytochrome c biogenesis protein CcsA n=1 Tax=Schiz...	[more]
A0A8F8SQQ5_9MARC	1.050e-60	83.84	Cytochrome c biogenesis protein CcsA n=3 Tax=March...	[more]
CCSA_MARPO	1.070e-60	83.84	Cytochrome c biogenesis protein CcsA n=8 Tax=March...	[more]
A0A8F3BEN9_9MARC	1.070e-60	83.84	Cytochrome c biogenesis protein CcsA n=1 Tax=Lunul...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017562	Cytochrome c-type biogenesis protein CcsA	TIGRFAM	TIGR03144	TIGR03144	coord: 1..97 e-value: 3.1E-58 score: 195.4
IPR002541	Cytochrome c assembly protein	PFAM	PF01578	Cytochrom_C_asm	coord: 1..94 e-value: 2.5E-43 score: 148.3
None	No IPR available	PANTHER	PTHR30071	HEME EXPORTER PROTEIN C	coord: 1..99
None	No IPR available	PANTHER	PTHR30071:SF9		coord: 1..99
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 32..42
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 43..61
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 62..67
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..31
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 91..100
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 68..90
None	No IPR available	TMHMM	TMhelix		coord: 42..61
None	No IPR available	TMHMM	TMhelix		coord: 68..90
None	No IPR available	TMHMM	TMhelix		coord: 5..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig85748	contig	S-dermatodea_contig85748:383..685 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig85748.16734.1	mRNA_S-dermatodea_contig85748.16734.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig85748 383..685 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig85748.16734.1 ID=prot_S-dermatodea_contig85748.16734.1|Name=mRNA_S-dermatodea_contig85748.16734.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLI
FAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT
*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR017562	Cyt_c_biogenesis_CcsA
IPR002541	Cyt_c_assembly