mRNA_S-dermatodea_contig85748.16734.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85748.16734.1
Unique NamemRNA_S-dermatodea_contig85748.16734.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A8F0F862_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F862_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 3.570e-66
Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 1 
Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT 300
            LDNWSYR ISLGFPLLTIGIIAGA+WANEAWGSYWSWDPKETWALITWL+FAAYLHVRLI+GWSGK PAILAS GFFVVWICYLGVNFLGQGLH+YGWL+
Sbjct:  230 LDNWSYRTISLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHVRLIVGWSGKGPAILASLGFFVVWICYLGVNFLGQGLHTYGWLS 329
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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A2I4Q2E4_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2E4_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 3.940e-64
Identity = 88/100 (88.00%), Postives = 95/100 (95.00%), Query Frame = 1 
Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT 300
            LDNWSY+ ISLGFPLLTIGIIAGA+WANEAWGSYWSWDPKETWALITWL+FAAYLH+RLI GWSGK PAILAS GFF +W+CYLGVNFLGQGLHSYGWL+
Sbjct:  209 LDNWSYKMISLGFPLLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHIRLIKGWSGKGPAILASLGFFFIWVCYLGVNFLGQGLHSYGWLS 308
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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A8F0FAP1_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAP1_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 5.890e-64
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT 300
            LDNW YR ISLGFP LTIGIIAGA+WANEAWGSYWSWDPKETWALITWLIFAAYLH+RLI GW GK PAILAS GFFVVWICYLGVNFLGQGLHSYGWLT
Sbjct:  226 LDNWGYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHLRLIKGWVGKGPAILASIGFFVVWICYLGVNFLGQGLHSYGWLT 325
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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A516ICR2_9PHAE (Cytochrome c biogenesis protein CcsA n=27 Tax=Laminariales TaxID=2886 RepID=A0A516ICR2_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 9.070e-64
Identity = 89/100 (89.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT 300
            +DNWSYRAISLGFP LTIGIIAGA+WANEAWGSYWSWDPKETWALITWLIFAAYLH+RLI+G +GK+PA+LAS GFFVVWICYLGVNFLGQGLHSYGW T
Sbjct:  229 IDNWSYRAISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHLRLIVGLNGKKPALLASIGFFVVWICYLGVNFLGQGLHSYGWFT 328
[Close]
BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A8F0F9V5_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9V5_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 9.070e-64
Identity = 89/100 (89.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT 300
            +DNWSYRAISLGFP LTIGIIAGA+WANEAWGSYWSWDPKETWALITWLIFAAYLH+RLI+G +GK+PA+LAS GFFVVWICYLGVNFLGQGLHSYGW T
Sbjct:  229 IDNWSYRAISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHLRLIVGLNGKKPALLASIGFFVVWICYLGVNFLGQGLHSYGWFT 328
[Close]
BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A8E5XRE0_9PHAE (Cytochrome c biogenesis protein CcsA n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRE0_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 3.670e-63
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = 1 
Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWL 297
            LDNWSYR ISLGFP LTIGIIAGA+WANEAWGSYWSWDPKETWALITWL+FAAYLHVRLI GW G++PA+L S GFFVVWICYLGVNFLGQGLHSYGWL
Sbjct:  217 LDNWSYRTISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLVFAAYLHVRLIKGWDGEKPAMLGSIGFFVVWICYLGVNFLGQGLHSYGWL 315
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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A7S6U9V9_9STRA (Cytochrome c biogenesis protein CcsA n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9V9_9STRA)

HSP 1 Score: 201 bits (510), Expect = 6.000e-62
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 1 
Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT 300
            +D WSYR ISLGFP LTIGIIAGA+WANEAWGSYWSWDPKETWALITWLIFAAYLH+RLI GW GK PA LAS GFFVVWICYLGVNFLGQGLHSYGWL+
Sbjct:  255 IDIWSYRIISLGFPFLTIGIIAGAVWANEAWGSYWSWDPKETWALITWLIFAAYLHIRLIKGWHGKRPAFLASIGFFVVWICYLGVNFLGQGLHSYGWLS 354
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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A8F8SQQ5_9MARC (Cytochrome c biogenesis protein CcsA n=3 Tax=Marchantiophyta TaxID=3195 RepID=A0A8F8SQQ5_9MARC)

HSP 1 Score: 196 bits (499), Expect = 1.050e-60
Identity = 83/99 (83.84%), Postives = 92/99 (92.93%), Query Frame = 1 
Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWL 297
            LDNWSYR ISLGFPLLTIGI++GA+WANEAWGSYW+WDPKETWALITWLIFA YLH R+I GW GK+PAI+AS GFF+VWICYLGVN LG+GLHSYGWL
Sbjct:  220 LDNWSYRVISLGFPLLTIGILSGAVWANEAWGSYWNWDPKETWALITWLIFAIYLHTRMIKGWQGKKPAIIASLGFFIVWICYLGVNLLGKGLHSYGWL 318
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BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: CCSA_MARPO (Cytochrome c biogenesis protein CcsA n=8 Tax=Marchantiales TaxID=28908 RepID=CCSA_MARPO)

HSP 1 Score: 196 bits (499), Expect = 1.070e-60
Identity = 83/99 (83.84%), Postives = 92/99 (92.93%), Query Frame = 1 
Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWL 297
            LDNWSYR ISLGFPLLTIGI++GA+WANEAWGSYW+WDPKETWALITWLIFA YLH R+I GW GK+PAI+AS GFF+VWICYLGVN LG+GLHSYGWL
Sbjct:  221 LDNWSYRVISLGFPLLTIGILSGAVWANEAWGSYWNWDPKETWALITWLIFAIYLHTRMIKGWQGKKPAIIASLGFFIVWICYLGVNLLGKGLHSYGWL 319
[Close]
BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Match: A0A8F3BEN9_9MARC (Cytochrome c biogenesis protein CcsA n=1 Tax=Lunularia cruciata TaxID=56931 RepID=A0A8F3BEN9_9MARC)

HSP 1 Score: 196 bits (499), Expect = 1.070e-60
Identity = 83/99 (83.84%), Postives = 92/99 (92.93%), Query Frame = 1 
Query:    1 LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLIFAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWL 297
            LDNWSYR ISLGFPLLTIGI++GA+WANEAWGSYW+WDPKETWALITWLIFA YLH R+I GW GK+PAI+AS GFF+VWICYLGVN LG+GLHSYGWL
Sbjct:  221 LDNWSYRVISLGFPLLTIGILSGAVWANEAWGSYWNWDPKETWALITWLIFAIYLHTRMIKGWQGKKPAIIASLGFFIVWICYLGVNLLGKGLHSYGWL 319
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85748.16734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F862_9PHAE3.570e-6692.00Cytochrome c biogenesis protein CcsA n=1 Tax=Proto... [more]
A0A2I4Q2E4_9PHAE3.940e-6488.00Cytochrome c biogenesis protein CcsA n=1 Tax=Dicty... [more]
A0A8F0FAP1_9PHAE5.890e-6491.00Cytochrome c biogenesis protein CcsA n=1 Tax=Desma... [more]
A0A516ICR2_9PHAE9.070e-6489.00Cytochrome c biogenesis protein CcsA n=27 Tax=Lami... [more]
A0A8F0F9V5_9PHAE9.070e-6489.00Cytochrome c biogenesis protein CcsA n=1 Tax=Chord... [more]
A0A8E5XRE0_9PHAE3.670e-6388.89Cytochrome c biogenesis protein CcsA n=1 Tax=Ishig... [more]
A0A7S6U9V9_9STRA6.000e-6288.00Cytochrome c biogenesis protein CcsA n=1 Tax=Schiz... [more]
A0A8F8SQQ5_9MARC1.050e-6083.84Cytochrome c biogenesis protein CcsA n=3 Tax=March... [more]
CCSA_MARPO1.070e-6083.84Cytochrome c biogenesis protein CcsA n=8 Tax=March... [more]
A0A8F3BEN9_9MARC1.070e-6083.84Cytochrome c biogenesis protein CcsA n=1 Tax=Lunul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85748contigS-dermatodea_contig85748:383..685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.1
Seed ortholog evalue3.1e-47
Seed eggNOG ortholog2880.D1J757
Preferred nameccsA
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0008150,GO:0008152,GO:0009536,GO:0015886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051181,GO:0051234,GO:0055114,GO:0071702,GO:0071705,GO:1901678
EggNOG free text desc.cytochrome complex assembly
EggNOG OGs2QU0T@2759,COG0755@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925352.587915-CDS-S-dermatodea_contig85748:382..6851622925352.587915-CDS-S-dermatodea_contig85748:382..685Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85748 383..685 -
1694079875.6257665-CDS-S-dermatodea_contig85748:382..6851694079875.6257665-CDS-S-dermatodea_contig85748:382..685Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85748 383..685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85748.16734.1prot_S-dermatodea_contig85748.16734.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85748 383..685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85748.16734.1

>prot_S-dermatodea_contig85748.16734.1 ID=prot_S-dermatodea_contig85748.16734.1|Name=mRNA_S-dermatodea_contig85748.16734.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
LDNWSYRAISLGFPLLTIGIIAGAIWANEAWGSYWSWDPKETWALITWLI
FAAYLHVRLIIGWSGKEPAILASFGFFVVWICYLGVNFLGQGLHSYGWLT
*
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mRNA from alignment at S-dermatodea_contig85748:383..685-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85748.16734.1 ID=mRNA_S-dermatodea_contig85748.16734.1|Name=mRNA_S-dermatodea_contig85748.16734.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=303bp|location=Sequence derived from alignment at S-dermatodea_contig85748:383..685- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGATAACTGGAGTTATCGAGCAATAAGTTTAGGGTTTCCTTTATTAAC
AATTGGTATCATAGCAGGTGCTATTTGGGCAAATGAAGCTTGGGGTTCAT
ACTGGAGTTGGGATCCTAAAGAAACATGGGCTTTAATTACTTGGTTAATT
TTTGCAGCATATTTACATGTACGTCTTATTATAGGTTGGTCTGGTAAAGA
ACCTGCAATTTTAGCTAGTTTTGGATTTTTTGTAGTATGGATTTGCTATC
TAGGGGTTAATTTTTTAGGACAAGGTCTACATAGCTATGGTTGGTTGACC
TAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig85748:383..685-

>mRNA_S-dermatodea_contig85748.16734.1 ID=mRNA_S-dermatodea_contig85748.16734.1|Name=mRNA_S-dermatodea_contig85748.16734.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig85748:383..685- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTGATAACTGGAGTTATCGAGCAATAAGTTTAGGGTTTCCTTTATTAAC
AATTGGTATCATAGCAGGTGCTATTTGGGCAAATGAAGCTTGGGGTTCAT
ACTGGAGTTGGGATCCTAAAGAAACATGGGCTTTAATTACTTGGTTAATT
TTTGCAGCATATTTACATGTACGTCTTATTATAGGTTGGTCTGGTAAAGA
ACCTGCAATTTTAGCTAGTTTTGGATTTTTTGTAGTATGGATTTGCTATC
TAGGGGTTAATTTTTTAGGACAAGGTCTACATAGCTATGGTTGGTTGACC
TAACTTGATAACTGGAGTTATCGAGCAATAAGTTTAGGGTTTCCTTTATT
AACAATTGGTATCATAGCAGGTGCTATTTGGGCAAATGAAGCTTGGGGTT
CATACTGGAGTTGGGATCCTAAAGAAACATGGGCTTTAATTACTTGGTTA
ATTTTTGCAGCATATTTACATGTACGTCTTATTATAGGTTGGTCTGGTAA
AGAACCTGCAATTTTAGCTAGTTTTGGATTTTTTGTAGTATGGATTTGCT
ATCTAGGGGTTAATTTTTTAGGACAAGGTCTACATAGCTATGGTTGGTTG
ACCTAA
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