prot_S-dermatodea_contig8004.16191.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8004.16191.1
Unique Nameprot_S-dermatodea_contig8004.16191.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length388
Homology
BLAST of mRNA_S-dermatodea_contig8004.16191.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 4.670e-80
Identity = 185/409 (45.23%), Postives = 236/409 (57.70%), Query Frame = 0
Query:   13 AFAMTMYLRRSLTGPRGNFASVLSVGRLRREAPLARLLLRPSLRLLHSENSNRSVVAPQLPSTPPXXXDPNVPRPASLSIEQQTKALEEDVFRALCEPRPNTPLMVALVRGLVQLGERPSLEVVRALAEHLLAARDAQSATAVLSLLKRAAPSPPPTAEVTAAEDPLSVMYLAVATAHCRRRDVARALAAVSEMEEETGRPPSAKVFLSLLEACSIPRPPLVREAEAVWAKIE-------------------------------KKGLLVEEGVQQDLFAARMTAYANSAGYAQADGDWEEAQQSVLDKVDMAWNDMLFVL--AASAPTDEESTAERHEQVTAASWLARAAALSLCARDSGGISDSAMCRSLEAIQSYLQAGGVFGGSADIFALAEVVRGLARCGRQNE 388
            AF   ++LRRSL G +   A  +     R +APLARLL   S R +HS    R+ V     ++          RP   SIE  T  L+E++FR LCEPRP++P +VALVRG+V  G +PS+E V ALA+H   A+DA+S  AVLSLLK + P          A DP+ +M+  +  AHCRR+DV  ALA V EME  TGR    +V+  LL  C+I RPPL+ E EAVW  I+                               ++GL    GVQQDLF   MT +ANSAGYA    + ++ QQ  L+KVD AW+ ML  L  AASA TD + T +    VT  SW+ARAAAL+LC RDSG +S +AM RS++A +SY + GG F    DIF LAEVVRGLARCGRQ+E
Sbjct: 1640 AFESHLFLRRSLVGSKRELALAVCSRSQRGQAPLARLLAGASPRQVHSALPARTSVPVDGGAS---GTAAGAARPED-SIEVATSQLQEEMFRVLCEPRPSSPSLVALVRGMVAAGAQPSIEAVEALADHFSEAKDARSIKAVLSLLKPSKPG-------LTAVDPIGIMFSRLVRAHCRRQDVTSALAEVVEMEA-TGREVDLEVYSDLLHGCAIARPPLLGEVEAVWTHIQVRAVPAHARVSQGALVRIATSLADHARSRYMERGLTTRGGVQQDLFVGLMTTHANSAGYALFGDNQQDQQQVPLEKVDEAWDGMLEALNVAASASTDPDRTVDEGGLVTPESWMARAAALALCVRDSGLVSGAAMSRSMDAFRSYRRYGGSFASREDIFGLAEVVRGLARCGRQSE 2036          
BLAST of mRNA_S-dermatodea_contig8004.16191.1 vs. uniprot
Match: D7FVF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF8_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 1.460e-59
Identity = 141/312 (45.19%), Postives = 180/312 (57.69%), Query Frame = 0
Query:  124 LVQLGERPSLEVVRALAEHLLAARDAQSATAVLSLLKRAAPSPPPTAEVTAAEDPLSVMYLAVATAHCRRRDVARALAAVSEMEEETGRPPSAKVFLSLLEACSIPRPPLVREAEAVWAKIEKKGLLVEEGVQQDLFAARMTAYANSAGYAQ-ADGDWEEAQQSVL--------------------------------------------DKVDMAWNDMLFVL--AASAPTDEESTAERHEQVTAASWLARAAALSLCARDSGGISDSAMCRSLEAIQSYLQAGGVFGGSADIFALAEVVRGLARCGRQNE 388
            +V  G +PS+E + ALA+H   A+DA+S  AVLSLLK + P          A DP+ +M+  +  AHCRR+DV  ALA V+EME  TGR    +V+  LL  C+I RPPL+ E EAVWA I+++GL    GVQQD+F   MT +ANSAGYA   D   ++ Q++VL                                            +KVD AW+ ML  L  AASA TD + TA+    VT  SW+ARA++L+LC RDSG ISD AM RS+EA +SY + GG F    DIF LAEVVRGLARCGRQ+E
Sbjct:    1 MVAAGAQPSIEAIEALADHFSEAKDARSIKAVLSLLKGSKPG-------LTAVDPIGIMFSRLVRAHCRRQDVTSALAEVAEMEA-TGREVDVEVYSDLLHGCAIARPPLLVEMEAVWAHIQERGLTTRGGVQQDIFVGLMTTHANSAGYAPFGDNQQDQQQRTVLGACGVPHPLKGHGPPLSVPSAADKSNKFQHCSYSPRNSRTQAPLEKVDEAWDGMLEALNEAASASTDPDRTADEGGLVTPESWMARASSLALCVRDSGLISDDAMSRSMEAFRSYRRYGGSFASREDIFGLAEVVRGLARCGRQSE 304          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8004.16191.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBD4_9PHAE4.670e-8045.23Integrase catalytic domain-containing protein n=1 ... [more]
D7FVF8_ECTSI1.460e-5945.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 102..325
e-value: 2.7E-9
score: 39.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8004contigS-dermatodea_contig8004:525..4675 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8004.16191.1mRNA_S-dermatodea_contig8004.16191.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8004 523..4675 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8004.16191.1 ID=prot_S-dermatodea_contig8004.16191.1|Name=mRNA_S-dermatodea_contig8004.16191.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=388bp
SPSFAAPTGGWLAFAMTMYLRRSLTGPRGNFASVLSVGRLRREAPLARLL
LRPSLRLLHSENSNRSVVAPQLPSTPPAPPDPNVPRPASLSIEQQTKALE
EDVFRALCEPRPNTPLMVALVRGLVQLGERPSLEVVRALAEHLLAARDAQ
SATAVLSLLKRAAPSPPPTAEVTAAEDPLSVMYLAVATAHCRRRDVARAL
AAVSEMEEETGRPPSAKVFLSLLEACSIPRPPLVREAEAVWAKIEKKGLL
VEEGVQQDLFAARMTAYANSAGYAQADGDWEEAQQSVLDKVDMAWNDMLF
VLAASAPTDEESTAERHEQVTAASWLARAAALSLCARDSGGISDSAMCRS
LEAIQSYLQAGGVFGGSADIFALAEVVRGLARCGRQNE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf