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Homology
BLAST of mRNA_S-dermatodea_contig8004.16191.1 vs. uniprot
Match: A0A6H5KBD4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD4_9PHAE) HSP 1 Score: 278 bits (711), Expect = 4.670e-80 Identity = 185/409 (45.23%), Postives = 236/409 (57.70%), Query Frame = 1
Query: 37 AFAMTMYLRRSLTGPRGNFASVLSVGRLRREAPLARLLLRPSLRLLHSENSNRSVVAPQLPSTPPXXXDPNVPRPASLSIEQQTKALEEDVFRALCEPRPNTPLMVALVRGLVQLGERPSLEVVRALAEHLLAARDAQSATAVLSLLKRAAPSPPPTAEVTAAEDPLSVMYLAVATAHCRRRDVARALAAVSEMEEETGRPPSAKVFLSLLEACSIPRPPLVREAEAVWAKIE-------------------------------KKGLLVEEGVQQDLFAARMTAYANSAGYAQADGDWEEAQQSVLDKVDMAWNDMLFVL--AASAPTDEESTAERHEQVTAASWLARAAALSLCARDSGGISDSAMCRSLEAIQSYLQAGGVFGGSADIFALAEVVRGLARCGRQNE 1164
AF ++LRRSL G + A + R +APLARLL S R +HS R+ V ++ RP SIE T L+E++FR LCEPRP++P +VALVRG+V G +PS+E V ALA+H A+DA+S AVLSLLK + P A DP+ +M+ + AHCRR+DV ALA V EME TGR +V+ LL C+I RPPL+ E EAVW I+ ++GL GVQQDLF MT +ANSAGYA + ++ QQ L+KVD AW+ ML L AASA TD + T + VT SW+ARAAAL+LC RDSG +S +AM RS++A +SY + GG F DIF LAEVVRGLARCGRQ+E
Sbjct: 1640 AFESHLFLRRSLVGSKRELALAVCSRSQRGQAPLARLLAGASPRQVHSALPARTSVPVDGGAS---GTAAGAARPED-SIEVATSQLQEEMFRVLCEPRPSSPSLVALVRGMVAAGAQPSIEAVEALADHFSEAKDARSIKAVLSLLKPSKPG-------LTAVDPIGIMFSRLVRAHCRRQDVTSALAEVVEMEA-TGREVDLEVYSDLLHGCAIARPPLLGEVEAVWTHIQVRAVPAHARVSQGALVRIATSLADHARSRYMERGLTTRGGVQQDLFVGLMTTHANSAGYALFGDNQQDQQQVPLEKVDEAWDGMLEALNVAASASTDPDRTVDEGGLVTPESWMARAAALALCVRDSGLVSGAAMSRSMDAFRSYRRYGGSFASREDIFGLAEVVRGLARCGRQSE 2036
BLAST of mRNA_S-dermatodea_contig8004.16191.1 vs. uniprot
Match: D7FVF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVF8_ECTSI) HSP 1 Score: 216 bits (551), Expect = 1.460e-59 Identity = 141/312 (45.19%), Postives = 180/312 (57.69%), Query Frame = 1
Query: 370 LVQLGERPSLEVVRALAEHLLAARDAQSATAVLSLLKRAAPSPPPTAEVTAAEDPLSVMYLAVATAHCRRRDVARALAAVSEMEEETGRPPSAKVFLSLLEACSIPRPPLVREAEAVWAKIEKKGLLVEEGVQQDLFAARMTAYANSAGYAQ-ADGDWEEAQQSVL--------------------------------------------DKVDMAWNDMLFVL--AASAPTDEESTAERHEQVTAASWLARAAALSLCARDSGGISDSAMCRSLEAIQSYLQAGGVFGGSADIFALAEVVRGLARCGRQNE 1164
+V G +PS+E + ALA+H A+DA+S AVLSLLK + P A DP+ +M+ + AHCRR+DV ALA V+EME TGR +V+ LL C+I RPPL+ E EAVWA I+++GL GVQQD+F MT +ANSAGYA D ++ Q++VL +KVD AW+ ML L AASA TD + TA+ VT SW+ARA++L+LC RDSG ISD AM RS+EA +SY + GG F DIF LAEVVRGLARCGRQ+E
Sbjct: 1 MVAAGAQPSIEAIEALADHFSEAKDARSIKAVLSLLKGSKPG-------LTAVDPIGIMFSRLVRAHCRRQDVTSALAEVAEMEA-TGREVDVEVYSDLLHGCAIARPPLLVEMEAVWAHIQERGLTTRGGVQQDIFVGLMTTHANSAGYAPFGDNQQDQQQRTVLGACGVPHPLKGHGPPLSVPSAADKSNKFQHCSYSPRNSRTQAPLEKVDEAWDGMLEALNEAASASTDPDRTADEGGLVTPESWMARASSLALCVRDSGLISDDAMSRSMEAFRSYRRYGGSFASREDIFGLAEVVRGLARCGRQSE 304
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Ec32 ortholog description | Pentatricopeptide repeat |
| Ec32 ortholog | Ec-14_000950.1 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1168 |
| Cds size | 1164 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8004.16191.1 >prot_S-dermatodea_contig8004.16191.1 ID=prot_S-dermatodea_contig8004.16191.1|Name=mRNA_S-dermatodea_contig8004.16191.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=388bp
SPSFAAPTGGWLAFAMTMYLRRSLTGPRGNFASVLSVGRLRREAPLARLL
LRPSLRLLHSENSNRSVVAPQLPSTPPAPPDPNVPRPASLSIEQQTKALE
EDVFRALCEPRPNTPLMVALVRGLVQLGERPSLEVVRALAEHLLAARDAQ
SATAVLSLLKRAAPSPPPTAEVTAAEDPLSVMYLAVATAHCRRRDVARAL
AAVSEMEEETGRPPSAKVFLSLLEACSIPRPPLVREAEAVWAKIEKKGLL
VEEGVQQDLFAARMTAYANSAGYAQADGDWEEAQQSVLDKVDMAWNDMLF
VLAASAPTDEESTAERHEQVTAASWLARAAALSLCARDSGGISDSAMCRS
LEAIQSYLQAGGVFGGSADIFALAEVVRGLARCGRQNE back to topmRNA from alignment at S-dermatodea_contig8004:523..4675- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8004.16191.1 ID=mRNA_S-dermatodea_contig8004.16191.1|Name=mRNA_S-dermatodea_contig8004.16191.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4153bp|location=Sequence derived from alignment at S-dermatodea_contig8004:523..4675- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCACCCTCCTTTGCTGCGCCTACTGGCGGCTGGCTGGCTTTTGCAATGAC
CATGTACCTACGGAGGAGCTTGACTGGACCGAGAGGTAACTTTGCATCGG
TCCTATCCGTCGGAAGGCTACGCAGGGAAGCTCCTTTGGCTAGGCTGCTG
CTGCGACCCTCGCTGCGCCTGCTGCACTCCGAGAACAGCAACCGCAGCGT
CGTTGCGCCGCAACTGCCGAGTACACCACCTGCCCCTCCAGACCCCAATG
TGCCTCGCCCGGCTTCACTCAGCATCGAACAGCAAACGAAGGCGCTGGAG
GAGGATGTTTTCAGGGCTCTGTGCGAGCCGAGGCCCAACACCCCGCTGAT
GGTGGCCTTGGTTCGGGGTCTGGTGCAGCTGGGGGAGCGACCATCTCTCG
AAGTGGTGCGAGCCTTGGCGGAGCACTTGTTGGCCGCCAGAGACGCGCAG
AGCGCCACGGTGAGCGAGCCTCGACTCGGCGTAGACAGTCCGTCCAGCGC
CTCTACTGGCGAGGACGTTGGTGTCGGGGATAGCGTCCGTCAGTTTCTGG
TGTTTGTGTGGGAAGAGCAACGCGTCGATTCTGAGAGCTGAGAGCCCCAC
GGCCAGGATATCGCCCTCACGCTCTCCGTCGCCCAACGCTCGAGTCGGAA
TCTGAACCAGCAGCCCACGAGTCACCCCCCGTCCTAGCCCTGTGTTGGTT
CACTCGGGTCGGCTGAGCGCCGTCCCTCGCCGCCTGTCGTTTTTCTCTGC
GTTGGAGTGGCCGCCCTCGCTTTGAACCCGACCTTACTGCGTAGAAATAA
GCTGCTGTAGCGAATCAGACCCTCTGCATGTTGTGGGGTAGCTCCTAGAG
GGTTTTCCGTCGTCGCCTACGGTAAATGTGATGCTGTCGCCGCGAGTTGC
CGCAGAGCCGAGTCGGTCGACCATAGTTGGGGGCGTTTTAAAAGGTGTAT
AGTAACGCCGGCTGAATATGTAACATGTGGTTGCCCGGTATGTCCAATCA
TTCCATGGCATATCGGTTGGAGTCGCAAACGAAAGAATGATGGCTAGCAG
CTAGTATCATCCTTGTGAAACACTATAGTATACGTGAAACCGAGCGAACC
TTTCACGCCTTGTGCATGTTTTTGTGTGAAAAGCAGGTGTACGTTTCGCC
TAGCAGATACGGACTCGTCGTAACTTCTGGAGATGTGTGCCTACGCGTTC
GTTGAATTCAAATATATACAAATAAGGTCGCCTTTCTTTTTAGAGTTATT
TCCTTATTGTTCGCTGCTGCTGCCCTTTACTTTCCCGGCGTGCCCGTGCA
CGCGCTCTTTTAAGGCCGTGCTATCCCTGCTGAAGCGCGCGGCACCAAGT
CCTCCGCCAACGGCCGAGGTTACTGCGGCAGAAGATCCGCTCAGCGTCAT
GTACCTCGCCGTGGCAACCGCGCACTGTCGAAGGCGGGACGTGGCTCGCG
CCCTAGCCGCGGTCTCGGAAATGGAGGAAGAAACGGGTCGGCCGCCGAGC
GCTAAGGTGTTCCTGTCTCTGTTGGAGGCGTGCTCGATTCCGAGGCCGCC
CCTGGTGCGGGAGGCAGAGGCTGTCTGGGCGAAGATCGAGGTGCGGGGGG
CTGTTCCCATTGTAGCAGCGTGCTGACGAGGGTTGTGCTCGGTTCTGATG
GGTGGAATTGTTGGGGCGGGGGGTGAGCCCACTTTGACGAGGCGGGTCAC
AAAAATGCATGGTGCGTCTCGTCGGTTACGGTATACGTCGCGGTGCGATG
TGTTTTCACCTCTTGCTTCAGTCTGGCATCACTTGCGCGAACAGGAGGGA
AAATGCCGCATGTATCACCCCCCCCCTTCCCTGTTAAAGTAGGACCCACA
ACCCGCCTGCCTTTGAGGCTCGAGGTGGGGTTGGTCGAGGTTGGGTTGGC
TCTTGTGGTATGGAGCTGTAAAACGTCTATTTAGAGGGCATAGGGGAGTT
CATGCAGTGTGTCCTGCGAGCTCAAGGAGACCTCGGTCGAAGAGTCTTGT
CTCTCCCCAAAGGGATGAAACGCATCACACCCTATAGTATACGTGCTGAA
CATTGGATTGGTGGAACACCCTAGAGCGACCAATCACTTATGATTGGTAC
TCCGCACTCATGAGCAGATTATAGCCTGAGTGTATGACACATATACTACC
GTGTATATTGTGTGCGTGCGGCACTTTCACGTTCAAACGGAGATCAAAGT
CATTTTGCGGTACTTGGGAGTATAGTCACGCCTACTGAATGTGCAGCATT
TGGTTGCCTGGCATGTTCAATCTACCCGTGGTATATCGGTTGGCTTCGCA
AACGCAAGGGTGATGGCTGTTATAGCAGCTGGTATCATCCTTGTGGAACG
CAGCCTGGTCGGCTAAAATCCGGCATATCGCTCCTTCCCGGCATTATTGG
GACGCGTGGTCTGTGTCCGTCTGGATACGATATGCGCGTTTAACATAAGT
ACCCCCTTCCCCCCCCCTTCCCCCACCTCCCGCTTTTTGCATTTTTTTTT
GTGTCCTCATTCCTACAGAAGAAAGGGCTCTTGGTGGAAGAAGGCGTTCA
ACAGGATCTCTTTGCCGCCCGAATGACTGCCTACGCCAACAGTGCGGGAT
ACGCGCAGGCGGACGGTGACTGGGAAGAGGCGCAGCAGGTGCCACGACCC
TCGCATTGTTTTCAGGGTGCGGGTTTTCATGTTTTCCATTATAGAGTTTA
GTTGAAGAACGGAATGGCTTGCTGCATGGACTGTCGCGGCTGGTGCACCG
CATGCTGCGGCCGCGAACGTGGCCTGGACACTGGCTCCAGCATTGAAAAC
GAGCAGTATATGCCAGCCTTCAGCGCGGCTTACTCGGCGCTGTACTGGAG
ATCCCGCACGTTCTCAAGGCAATATCGACACCGGATAACTACTTGTTCCT
TGGCCATGGTCGAGCCTTGTGTGTTGTCTCTTGGCTGACCCTCCTCTCCT
TACTCCACGTTAACCAGTTCACGAATGCATACGTCCTGGGAATAACACCT
CGCTGCTGTAGGTGTGTTACGGCGTGGTCAGTGCCATGTATGGCGTTCTT
TCGCCGCTTCGCGTGGCCCCTCTCTGTAAGCCGCCATCAAAGAAAAATGC
TTCGCGCGTAGCTCTGATGCACCTGTGTAGTACCGCGTAGAATGGGTCCC
GCAATGATCGCTTAGCGAGAAACCTTGGCACGGCCGCATCACAGATGCAG
GGTCCAACCGCATCACCGTCCGACCAGCCTACAACCACGCACCCCATCGC
CCAAAGCAATCGCCGTGACCCCGGCACCAAAATTCCTCGGCCAATCCGCC
GACTGGGCAGAGCGTTCTTGACAAGGTGGACATGGCGTGGAATGACATGC
TGTTCGTGCTGGCGGCAAGTGCACCCACAGACGAAGAAAGCACCGCAGAG
CGACACGAGCAAGTGACGGCGGCGTCTTGGCTTGCGCGCGCCGCGGCACT
ATCCTTGTGTGCACGGGACTCGGGTGGAATCTCTGATTCCGCCATGTGCA
GGTGAGCTTTTGTTGATTGAAAGCACGCTGCGCGGAAGAGGCCTTTTTTT
GGCGGGAGCAGTGATTACTTCTAGCTCTACATATTATAGCCCTCATCAGA
GCATGCACGCTGGTGCACCTTCACACTGAAGGAGGGTATGGGCACCATTA
CATTAATACTATCATTTGATTTAATTAGTTTAGGTGTTGTCGGGGGGGGT
GCGTTCTTGCAAGCGGGGGTGATACGTGTATCTCGCGGCGAAACCCGTTG
TCAAGGACGGTACACCGCCAAAGGTTTTTGCCGGCATCCCCTCCATACGT
GAGACTGTCTTGTGGTGTTTCAGCCCTCCGTGGCAGCGAGAAAAGTCTCG
AAACTGCGCATCGAGGTGCTCGAAGGCAATTCCGGCATCGTCTTGTGCGA
CATATCGTTTTTAGATGCACAGCCTCACTTACGGTTGTCGCTCGATCTCT
TCAAATACCGTTGTCTCCGTCGTCACGCCGCCGTGCGATGTCCCTGCTGT
GTCTACTGATTATGTGATGCGTGTCCCACCCAGGTCACTGGAAGCGATCC
AATCGTACCTGCAAGCTGGCGGTGTGTTCGGTGGGAGCGCTGATATCTTC
GCTCTCGCAGAGGTCGTCCGAGGGTTGGCCCGGTGTGGCCGACAGAATGA
GGT back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8004:523..4675- >mRNA_S-dermatodea_contig8004.16191.1 ID=mRNA_S-dermatodea_contig8004.16191.1|Name=mRNA_S-dermatodea_contig8004.16191.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2328bp|location=Sequence derived from alignment at S-dermatodea_contig8004:523..4675- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCACCCTCCTTTGCTGCGCCTACTGGCGGCTGGCTGGCTTTTGCAATGAC
CATGTACCTACGGAGGAGCTTGACTGGACCGAGAGGTAACTTTGCATCGG
TCCTATCCGTCGGAAGGCTACGCAGGGAAGCTCCTTTGGCTAGGCTGCTG
CTGCGACCCTCGCTGCGCCTGCTGCACTCCGAGAACAGCAACCGCAGCGT
CGTTGCGCCGCAACTGCCGAGTACACCACCTGCCCCTCCAGACCCCAATG
TGCCTCGCCCGGCTTCACTCAGCATCGAACAGCAAACGAAGGCGCTGGAG
GAGGATGTTTTCAGGGCTCTGTGCGAGCCGAGGCCCAACACCCCGCTGAT
GGTGGCCTTGGTTCGGGGTCTGGTGCAGCTGGGGGAGCGACCATCTCTCG
AAGTGGTGCGAGCCTTGGCGGAGCACTTGTTGGCCGCCAGAGACGCGCAG
AGCGCCACGTCACCCTCCTTTGCTGCGCCTACTGGCGGCTGGCTGGCTTT
TGCAATGACCATGTACCTACGGAGGAGCTTGACTGGACCGAGAGGTAACT
TTGCATCGGTCCTATCCGTCGGAAGGCTACGCAGGGAAGCTCCTTTGGCT
AGGCTGCTGCTGCGACCCTCGCTGCGCCTGCTGCACTCCGAGAACAGCAA
CCGCAGCGTCGTTGCGCCGCAACTGCCGAGTACACCACCTGCCCCTCCAG
ACCCCAATGTGCCTCGCCCGGCTTCACTCAGCATCGAACAGCAAACGAAG
GCGCTGGAGGAGGATGTTTTCAGGGCTCTGTGCGAGCCGAGGCCCAACAC
CCCGCTGATGGTGGCCTTGGTTCGGGGTCTGGTGCAGCTGGGGGAGCGAC
CATCTCTCGAAGTGGTGCGAGCCTTGGCGGAGCACTTGTTGGCCGCCAGA
GACGCGCAGAGCGCCACGGCCGTGCTATCCCTGCTGAAGCGCGCGGCACC
AAGTCCTCCGCCAACGGCCGAGGTTACTGCGGCAGAAGATCCGCTCAGCG
TCATGTACCTCGCCGTGGCAACCGCGCACTGTCGAAGGCGGGACGTGGCT
CGCGCCCTAGCCGCGGTCTCGGAAATGGAGGAAGAAACGGGTCGGCCGCC
GAGCGCTAAGGTGTTCCTGTCTCTGTTGGAGGCGTGCTCGATTCCGAGGC
CGCCCCTGGTGCGGGAGGCAGAGGCTGTCTGGGCGAAGATCGAGGCCGTG
CTATCCCTGCTGAAGCGCGCGGCACCAAGTCCTCCGCCAACGGCCGAGGT
TACTGCGGCAGAAGATCCGCTCAGCGTCATGTACCTCGCCGTGGCAACCG
CGCACTGTCGAAGGCGGGACGTGGCTCGCGCCCTAGCCGCGGTCTCGGAA
ATGGAGGAAGAAACGGGTCGGCCGCCGAGCGCTAAGGTGTTCCTGTCTCT
GTTGGAGGCGTGCTCGATTCCGAGGCCGCCCCTGGTGCGGGAGGCAGAGG
CTGTCTGGGCGAAGATCGAGAAGAAAGGGCTCTTGGTGGAAGAAGGCGTT
CAACAGGATCTCTTTGCCGCCCGAATGACTGCCTACGCCAACAGTGCGGG
ATACGCGCAGGCGGACGGTGACTGGGAAGAGGCGCAGCAGAAGAAAGGGC
TCTTGGTGGAAGAAGGCGTTCAACAGGATCTCTTTGCCGCCCGAATGACT
GCCTACGCCAACAGTGCGGGATACGCGCAGGCGGACGGTGACTGGGAAGA
GGCGCAGCAGAGCGTTCTTGACAAGGTGGACATGGCGTGGAATGACATGC
TGTTCGTGCTGGCGGCAAGTGCACCCACAGACGAAGAAAGCACCGCAGAG
CGACACGAGCAAGTGACGGCGGCGTCTTGGCTTGCGCGCGCCGCGGCACT
ATCCTTGTGTGCACGGGACTCGGGTGGAATCTCTGATTCCGCCATGTGCA
GAGCGTTCTTGACAAGGTGGACATGGCGTGGAATGACATGCTGTTCGTGC
TGGCGGCAAGTGCACCCACAGACGAAGAAAGCACCGCAGAGCGACACGAG
CAAGTGACGGCGGCGTCTTGGCTTGCGCGCGCCGCGGCACTATCCTTGTG
TGCACGGGACTCGGGTGGAATCTCTGATTCCGCCATGTGCAGGTCACTGG
AAGCGATCCAATCGTACCTGCAAGCTGGCGGTGTGTTCGGTGGGAGCGCT
GATATCTTCGCTCTCGCAGAGGTCGTCCGAGGGTTGGCCCGGTGTGGCCG
ACAGAATGAGGTCACTGGAAGCGATCCAATCGTACCTGCAAGCTGGCGGT
GTGTTCGGTGGGAGCGCTGATATCTTCGCTCTCGCAGAGGTCGTCCGAGG
GTTGGCCCGGTGTGGCCGACAGAATGAG back to top
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