prot_S-dermatodea_contig80.16187.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig80.16187.1
Unique Nameprot_S-dermatodea_contig80.16187.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length275
Homology
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BLAST of mRNA_S-dermatodea_contig80.16187.1 vs. uniprot
Match: D8LI08_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI08_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 1.100e-104
Identity = 171/289 (59.17%), Postives = 204/289 (70.59%), Query Frame = 0 
Query:    3 PPRRRSLIQRAAIVFGLLLPGFHQVSDAFVFLAPTQTRATCGGSTAPRGAAA---CL----PNHADSVERRMEGLYRQRYRGQSKR----TCASVQDGMDPAE------DGRPGEAFDDDGDMGMAPVDMEQAMGSFSPEWSNDTARADPKEHLIKGSVIAAGQTVFPYPIESFPPLTNSEVYYNGTSERFWWNQNSEAVCVYVPVPKGFDPQTVEFVAKTKQISLKFGGEEVLSGTLFYRIDGYESLFVVDSQNDPPYVQLDLFKVREYQNWEDLVIEYSSFTPGGAQ 274
            P RR+ L++RAA+  GLLLP   QVSDAFVF AP  + A+     A         CL     +      R+      QR++G+++R       S + G++ A       DG   + FD D    MAPVD++QAMGSFSPEW+N TAR + KE LIKGSVIAA QTVFPY I+SFPPLTNSEVYYNGTSER+WWNQN++AV VYVPVPK FD + VEFVAKT+ ISLKF GEEVL+GT FYRIDGY+SLFV+DS NDPPYVQL+LFKVREYQNWED ++E S FTPGGAQ
Sbjct:    4 PGRRKPLMRRAALALGLLLPSLDQVSDAFVFHAPVPSTASPCDHAAFESVGLTSNCLLKAWSSRTSRTGRKAPAPDGQRHQGKARRGIRPALMSFEPGVEAAAASAGGGDGGQEQGFDGD----MAPVDLDQAMGSFSPEWANGTARVEAKEQLIKGSVIAANQTVFPYSIDSFPPLTNSEVYYNGTSERYWWNQNADAVSVYVPVPKDFDAEKVEFVAKTRHISLKFDGEEVLAGTPFYRIDGYDSLFVLDSDNDPPYVQLELFKVREYQNWEDFLLEKSDFTPGGAQ 288
[Close]
BLAST of mRNA_S-dermatodea_contig80.16187.1 vs. uniprot
Match: A0A0G4GKM7_VITBC (CS domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GKM7_VITBC)

HSP 1 Score: 61.6 bits (148), Expect = 1.340e-7
Identity = 45/165 (27.27%), Postives = 76/165 (46.06%), Query Frame = 0 
Query:  101 AFDDDGDMGMAPVDMEQAMGSFSPEWSNDTARADPKEHLIKGSVIAAGQTVFPYPIESFPPLTNSEVYYNGTSERFWWNQNSEAVCVYVPVPKGFDPQTVEFVAKTKQISLKF--GGEEVLSGTLFYRIDGYESLFVVDSQND-PPYVQLDLFKVREYQNWEDLV 262
            A +D  + G +P D        +P  S  T  A+   +L           V P    SFP L  SE+Y++G  E F W QN EAV +YVP+P+G   + ++   +    SL+    G+ ++  +L  R+      + +D +     ++ + + K   YQNW+ L+
Sbjct:   28 AVEDAAENGGSPEDKFPPGPWTTPMHSYATTYAEEGRNLT--------DRVAPRDDTSFPRLEYSEIYHSGIKEAFRWQQNREAVYIYVPLPQGTTKRDLDVDLEVHPYSLRLCLNGDTIIDDSLSERVRCDGVFWTLDEEQPLGTFLTVSMEKKLPYQNWQKLL 184
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80.16187.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI08_ECTSI1.100e-10459.17CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A0G4GKM7_VITBC1.340e-727.27CS domain-containing protein n=1 Tax=Vitrella bras... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 171..263
e-value: 3.6E-13
score: 51.9
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 162..263
IPR007052CS domainPFAMPF04969CScoord: 175..238
e-value: 7.8E-6
score: 26.8
IPR007052CS domainPROSITEPS51203CScoord: 171..262
score: 11.023
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..30
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..30
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 31..274
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.606

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80contigS-dermatodea_contig80:37449..41926 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80.16187.1mRNA_S-dermatodea_contig80.16187.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig80 37386..42397 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig80.16187.1 ID=prot_S-dermatodea_contig80.16187.1|Name=mRNA_S-dermatodea_contig80.16187.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=275bp
MTPPRRRSLIQRAAIVFGLLLPGFHQVSDAFVFLAPTQTRATCGGSTAPR
GAAACLPNHADSVERRMEGLYRQRYRGQSKRTCASVQDGMDPAEDGRPGE
AFDDDGDMGMAPVDMEQAMGSFSPEWSNDTARADPKEHLIKGSVIAAGQT
VFPYPIESFPPLTNSEVYYNGTSERFWWNQNSEAVCVYVPVPKGFDPQTV
EFVAKTKQISLKFGGEEVLSGTLFYRIDGYESLFVVDSQNDPPYVQLDLF
KVREYQNWEDLVIEYSSFTPGGAQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone
IPR007052CS_dom