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Homology
BLAST of mRNA_S-dermatodea_contig80.16187.1 vs. uniprot
Match: D8LI08_ECTSI (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI08_ECTSI) HSP 1 Score: 315 bits (808), Expect = 2.760e-102 Identity = 171/289 (59.17%), Postives = 204/289 (70.59%), Query Frame = 1
Query: 70 PPRRRSLIQRAAIVFGLLLPGFHQVSDAFVFLAPTQTRATCGGSTAPRGAAA---CL----PNHADSVERRMEGLYRQRYRGQSKR----TCASVQDGMDPAE------DGRPGEAFDDDGDMGMAPVDMEQAMGSFSPEWSNDTARADPKEHLIKGSVIAAGQTVFPYPIESFPPLTNSEVYYNGTSERFWWNQNSEAVCVYVPVPKGFDPQTVEFVAKTKQISLKFGGEEVLSGTLFYRIDGYESLFVVDSQNDPPYVQLDLFKVREYQNWEDLVIEYSSFTPGGAQ 885
P RR+ L++RAA+ GLLLP QVSDAFVF AP + A+ A CL + R+ QR++G+++R S + G++ A DG + FD D MAPVD++QAMGSFSPEW+N TAR + KE LIKGSVIAA QTVFPY I+SFPPLTNSEVYYNGTSER+WWNQN++AV VYVPVPK FD + VEFVAKT+ ISLKF GEEVL+GT FYRIDGY+SLFV+DS NDPPYVQL+LFKVREYQNWED ++E S FTPGGAQ
Sbjct: 4 PGRRKPLMRRAALALGLLLPSLDQVSDAFVFHAPVPSTASPCDHAAFESVGLTSNCLLKAWSSRTSRTGRKAPAPDGQRHQGKARRGIRPALMSFEPGVEAAAASAGGGDGGQEQGFDGD----MAPVDLDQAMGSFSPEWANGTARVEAKEQLIKGSVIAANQTVFPYSIDSFPPLTNSEVYYNGTSERYWWNQNADAVSVYVPVPKDFDAEKVEFVAKTRHISLKFDGEEVLAGTPFYRIDGYDSLFVLDSDNDPPYVQLELFKVREYQNWEDFLLEKSDFTPGGAQ 288
BLAST of mRNA_S-dermatodea_contig80.16187.1 vs. uniprot
Match: A0A0G4GKM7_VITBC (CS domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GKM7_VITBC) HSP 1 Score: 62.0 bits (149), Expect = 2.860e-7 Identity = 45/165 (27.27%), Postives = 76/165 (46.06%), Query Frame = 1
Query: 364 AFDDDGDMGMAPVDMEQAMGSFSPEWSNDTARADPKEHLIKGSVIAAGQTVFPYPIESFPPLTNSEVYYNGTSERFWWNQNSEAVCVYVPVPKGFDPQTVEFVAKTKQISLKF--GGEEVLSGTLFYRIDGYESLFVVDSQND-PPYVQLDLFKVREYQNWEDLV 849
A +D + G +P D +P S T A+ +L V P SFP L SE+Y++G E F W QN EAV +YVP+P+G + ++ + SL+ G+ ++ +L R+ + +D + ++ + + K YQNW+ L+
Sbjct: 28 AVEDAAENGGSPEDKFPPGPWTTPMHSYATTYAEEGRNLT--------DRVAPRDDTSFPRLEYSEIYHSGIKEAFRWQQNREAVYIYVPLPQGTTKRDLDVDLEVHPYSLRLCLNGDTIIDDSLSERVRCDGVFWTLDEEQPLGTFLTVSMEKKLPYQNWQKLL 184
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | HSP20-like chaperone |
| Ec32 ortholog | Ec-18_001280.1 |
| Exons | 5 |
| Model size | 1359 |
| Cds size | 825 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig80.16187.1 >prot_S-dermatodea_contig80.16187.1 ID=prot_S-dermatodea_contig80.16187.1|Name=mRNA_S-dermatodea_contig80.16187.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=275bp
MTPPRRRSLIQRAAIVFGLLLPGFHQVSDAFVFLAPTQTRATCGGSTAPR
GAAACLPNHADSVERRMEGLYRQRYRGQSKRTCASVQDGMDPAEDGRPGE
AFDDDGDMGMAPVDMEQAMGSFSPEWSNDTARADPKEHLIKGSVIAAGQT
VFPYPIESFPPLTNSEVYYNGTSERFWWNQNSEAVCVYVPVPKGFDPQTV
EFVAKTKQISLKFGGEEVLSGTLFYRIDGYESLFVVDSQNDPPYVQLDLF
KVREYQNWEDLVIEYSSFTPGGAQ* back to topmRNA from alignment at S-dermatodea_contig80:37386..42397+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig80.16187.1 ID=mRNA_S-dermatodea_contig80.16187.1|Name=mRNA_S-dermatodea_contig80.16187.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5012bp|location=Sequence derived from alignment at S-dermatodea_contig80:37386..42397+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGGAGCCAGACACAGCCCAACCAGCACAGATAGGCGGGCCTAGCAGCGCC
GAGACAGCACGCCATGACCCCGCCCCGGCGAAGATCATTGATACAGCGAG
CCGCGATAGTCTTCGGCCTCCTGTTGCCCGGCTTTCACCAGGTTTCAGAT
GCGTTTGTGTTCCTCGCACCGACCCAAACACGTGCAACATGCGGTGGATC
AACAGCACCACGAGGAGCAGCAGCGTGCCTCCCAAACCATGCCGACAGCG
TAGAGCGACGAATGGAGGGGTTATATCGGCAGCGATATCGAGGGCAGGTA
ATTGATCGTTGCGCTTCGGTTTATCAGCATGCTCTCTTATTGCCGTATGG
CGTCATCTTACCTGCTGTGGACAGTACTACCCCAGCGCATACGGACCCGA
CAGACAGCCGCACAGCGCCTTTCCAGTCAAAACTCCCTGTGTGACTATGA
CAGAGCCTACTGCTGTACTGCTGTAGGCAATTTTCCTTCTTACCGCGTGT
CTGCACCTTCGTGTATGGCGGCGATTGTTTACTCGCTGCTGTAATAGCGC
TCCGTCCGTGATTGCTTGTTCACCTACTGCAGTATTGGTGGTCAATGCTT
CTTCCGTAGGTATCACAGCGGCTGCGGTGCGGTGTAACTACTTGTGGGTA
CAGGAGAGTACCGCTGTAGTATGTGTATTACCAGGTACACTATACAACAT
ACCTGGTACAAAATACCAGGGTTGCCTTGTGCGGGGTCAGCTATGATACC
CAAAGCCGTTGTGCACACTGGCGAACGCGTCAAGAGTCCCCCGGGGTTGT
ACGCCAGATCTTCGTTGAGGGCACGTCTTGGCGTTGCCGAAAAGATAATC
ATTGAGAGGCTTGCACACAAGCCCTCACAGCCCACGCCTTTGCACCCGTG
GGGACACGTACTTGGTACTACAGAGAGGGTACGTAGACACAGCGCGTATC
TGGTCCTCGTTCCCCCATGTCACGTGAAACGCGTGCGGCAACGGCAACCC
CTGCTCTGCCACTGGCCCTAACCTCCCTCACACATGCATCGCGTCACTGA
TGCAACGAAAATGCTGTTGTCTTTACCGGAAGAGCAAGCGAACTTGCGCG
AGCGTGCAAGACGGGATGGACCCTGCTGAAGACGGCAGGCCTGGGGAAGC
TTTTGACGACGATGGAGACATGGGCATGGCGCCAGTGGATATGGAGCAGG
CGATGGGCTCGTTCTCTCCCGAGTGGAGTAACGACACGGTGAGCTGCAGC
CGCGGACGTTTGCAGAAACTGTTACCAATTACCATCGTTGGCGTGTGTCT
ACATGTTACGTGGAGGGTGTGTGCGCTTGAGGTGTTGCCGCGCACAACCC
GTGGTGTTCTCAACCCCTGCACGGCAGTTGTGGGCGTGGGACGGCAGGAT
GTTAACATTTGTTGTGCCCTACAGCGCACAGCGCACACGCATGCAGTTCA
GACGTACCGTTATGCAGTGCAATAGGAGAGCCCAGCCGTGCCTCTCCCTG
TGCCTGCTCGGACTGAGAGAGCACTCCTGCGACAGAGGTGTTCGAGATGA
GTGAGGCCGACGTCTTGAAATACTGGACGTCAATCGTCGGATTAAACGGC
TGGGGCTCACGCCGCCGTTTTACACCCGAGGCCAGCGCGTACTTGCACAC
CAGTAGAGCCAGACAACAATGAATGGTATACGGGTAGACCCGCAGCTTCG
CAGTCTTCGTGGTCCGGCTGTTATTCCTATGTATGTGAGGTTGCCTTGGT
GTTTCAAGCTCACGTTCGGCAATGGTGAGACCATTTGACCCGTAATGCTG
CGCTATTGCCGTAGGACGAACGACGTTCCGTAGGGACACGCGCACAACCG
CCGTGGTCGAGGAGCAGTTCTCATCTCATCTCGGATTTTGGTCCCAAGTT
TGACGTGCGTGTGTTCCAGCAGTTTGTTTTCATACGGTGTTTAGATTCAA
GTGCGTCGCCCCCGCCAGGTTGTTCGGGTACCCTTTCTTAATAGATAGAA
CTTTCTCAATCTGCATTGCGTTGGCTTCACTCGACGGAAATTGTTGCTGG
ATGAGGTACAGTACACAGCCACGCGACCAACGTGCCTTTGCAATTTTTCT
CGGAGAACACGACCGTGCGTACAAACCAGTGCACTGACGCAGTAGCCAAA
AACGCTAAACCACACACGCTCCATCCAATCTTTCGTTCGCAGAGCTCCAT
CTTAGCCTTTCTTGTGTTGATCCCGCGACCGCTGTGCGCGTCTGCCCCGT
GCGTGCCCTAGTGCAGGCGAGAGCCGATCCCAAGGAGCACCTCATCAAGG
GCTCGGTGATCGCGGCGGGCCAGACCGTATTTCCCTACCCTATCGAGAGT
TTCCCACCGCTTACGAACAGCGAGGTGAGCGGTATTATTACGGTCTGCGT
ACTCACACCACCGACAGCGCCTGCGGGAGCCCAATCTGCGGCGTACTGTA
TACATTGATGCAGCGTTATCGTGTACGAGTGCGTTCCCTCGATTGCGTGC
CGAGCTGCCTATGTGACTCCATTGTCTGGAGATCCTGGCGGGTTGTCCTC
CAGTCACCCTTCAGCATCGTGCTGCAGAAAGCAAGACAGGGGGTGCTTGT
GTTAAACGCATGTCGTATCCAGACGGACATAGACCGCGCGTCCCAACCAA
AAACTGGGATGGAGCGATTTGCCGGGGTTTCGCCGGCCAAGCTTGTGTTT
CACGAGGATTATTCCAGCTGCTAGCCATCTTCCTTGCGTTTGCAGCACCG
GGGGAAGGGAGGGGGGTGTTAGAGTGCCAAAAGTGTGCCCGGCGTACCGT
CGCGCGTTAGTCGCATTTTCTGGGGACCATAGCGACCTCTGGGCGTTAAG
CCGACCGATCACTTTTGTGAGCAGCGGAGCGAGTGTCATTACAAACGATG
GGCGGGAAAGATAGCCAGCTCTGAGGCGTGGACGCACGCTGTGGAAGCTT
GTGTTAAATGGTGCAATATATTGTGATATGCCAGGGTAGAGGTTTTTCGC
TGCCGCTCCGAAATGTGGCATATGGACACGTCTACTTGTGGGCAACCGTA
GTCCACTCATAATGGGGGGGGAGGAAACGTGTCGGTGACCTCTATTTAGA
GCTCTACTCTAGAGTCGGCGTGTGTGTTTGCGATGCGTTCAAAGCTTTAC
ACAGTCAACAGTCTTGCTGACCTGGCGATAGTGCATTCGCACCCATCATG
AGCCTGACGAACGATCAGGAGGGCGGGTATCGCAAGGCATCGCAAAATGT
GGTCCGCCTCCCACCGCACGACTCGCCCCGTGTCCTCTCGTTCCCTCCAC
CGTGTGCGTGGCAATAGGCCACACCCCGTCCTTCTAGATAGCGTGCTACG
TCATGTCCGCGGAGGCGCTCACGCGCGTTAGTCGTGTTTCGATTATGTGA
TAGATTTTGTATTTTCTACCTCGCGCGTGCTTGTGTACTGCGACACGGCA
AACCGTGGTCTTGCGCTCAGGTATACTACAACGGCACGTCCGAGAGGTTC
TGGTGGAACCAAAACTCCGAGGCCGTGTGCGTTTACGTGCCGGTACCGAA
GGGCTTCGACCCCCAGACGGTGGAGTTCGTGGCTAAGACGAAACAGATCT
CGCTCAAGTTCGGCGGGGAGGAGGCGAGTGCTGCGTGTATTCCACTCTAT
TGTTTTTTTTTTTTTTCTGGCCACGTTTTTTCCTTTTTTTTACCATCTTT
GATCAAAAACGGTAAAGTGATCGGGATACTGTAGTCTGGCGAGTCAATAT
TTTGTGGCTCGGAGCCTTCGATACAGTTGGTGCGACAAGAGAAAGCGTGT
ATTAGTAGTTCGTCCAGCATCCAGCCTGCCACTTTCTCGGAAAGCTTTGC
TATTTTAGTCTACGTCTCTATCTCTAGTTCCATAGGCGGCGGGGTTCCAA
GCTCGCCCACCTGGTGGTGATATTTTTTCGGGCCGAGAAACGGCCGGGAA
GGCTCGAAATTGGTGACCCAACAGCAACGAATCGACGTGAGAAGTTGGAC
GAATCTCAAGCATCAACTCGTGTTTGAGAGTTATTGGTCTTCCAGCGGGT
TGAAGCGTTCCACCCGCCTCGATGGATTGGCTGAACGTGCGTGTTACCCC
GTGCAAAACGGACAACGACCCCCTTCACGCGACCGCGAAATCTCGTCGCG
CATGACTCAGCATGCACCCGTGCATTCGAGACGCCTACTGCGGTGCACTA
GATTGGGCTGGTTCCTGTTCATTTGGCCTTCGTTCGACCCGTTTGTGATG
ACTGGTTCGCTCCTCGACTGCTAACGTAGAGGTCGTCGCCCTTAACACGT
TAGTTACTACAGTTGTTCCGTGCGTGGATCTCACCGGTTTCTTTTTTGTC
TGCCCTATTTACTGCAGGTCCTCTCCGGCACGCTCTTCTATCGAATCGAC
GGCTACGAATCTCTGTTCGTCGTGGACTCCCAAAACGACCCGCCATACGT
GCAATTGGATTTGTTCAAGGTCCGAGAGTACCAGAATTGGGAAGACTTGG
TCATTGAATATTCAAGCTTCACACCAGGAGGGGCGCAATAGACGTAAAAA
ACATACCGTTAGCAATTAGCTCTAGAGCCATCTCTGTTGCGCAAGTGTTT
TTGACGGCGGCGTGGCTTTAGACTGGCCAGTCTTACTTTAGAGCAAGAGT
GTACGACAATTGGTGTACCAGAGGTTTTAAATTGCGTGGGCTTATCGACT
GACTGCGGATTGACACAAGAACCGCATTCGTTTGTGCTTTTTTAGGATTT
TTGGTGGGGTGCAGATGACAATGCGAGACTGAGTGCCGAGGTCACATGTG
AAATAGAAGCTGTTTGTGAGACTATAAGAAGTGGCACTTTGTATTGTGCG
GGGTGGCTACCCCCATCTCGAATGGGCTGAGAATCGAATGCCGCCCATAA
ATCGTCAACGGGAGCGCGCCAGCACATGCATGAAAAAAAAAAATCACAGG
TCGTGAGTTGTGAGTCGCAAGTGCCACGGACAGAAGCTGATATAACTGAT
TGACGCCCGATC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig80:37386..42397+ >mRNA_S-dermatodea_contig80.16187.1 ID=mRNA_S-dermatodea_contig80.16187.1|Name=mRNA_S-dermatodea_contig80.16187.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1650bp|location=Sequence derived from alignment at S-dermatodea_contig80:37386..42397+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACCCCGCCCCGGCGAAGATCATTGATACAGCGAGCCGCGATAGTCTT
CGGCCTCCTGTTGCCCGGCTTTCACCAGGTTTCAGATGCGTTTGTGTTCC
TCGCACCGACCCAAACACGTGCAACATGCGGTGGATCAACAGCACCACGA
GGAGCAGCAGCGTGCCTCCCAAACCATGCCGACAGCGTAGAGCGACGAAT
GGAGGGGTTATATCGGCAGCGATATCGAGGGCAGATGACCCCGCCCCGGC
GAAGATCATTGATACAGCGAGCCGCGATAGTCTTCGGCCTCCTGTTGCCC
GGCTTTCACCAGGTTTCAGATGCGTTTGTGTTCCTCGCACCGACCCAAAC
ACGTGCAACATGCGGTGGATCAACAGCACCACGAGGAGCAGCAGCGTGCC
TCCCAAACCATGCCGACAGCGTAGAGCGACGAATGGAGGGGTTATATCGG
CAGCGATATCGAGGGCAGAGCAAGCGAACTTGCGCGAGCGTGCAAGACGG
GATGGACCCTGCTGAAGACGGCAGGCCTGGGGAAGCTTTTGACGACGATG
GAGACATGGGCATGGCGCCAGTGGATATGGAGCAGGCGATGGGCTCGTTC
TCTCCCGAGTGGAGTAACGACACGAGCAAGCGAACTTGCGCGAGCGTGCA
AGACGGGATGGACCCTGCTGAAGACGGCAGGCCTGGGGAAGCTTTTGACG
ACGATGGAGACATGGGCATGGCGCCAGTGGATATGGAGCAGGCGATGGGC
TCGTTCTCTCCCGAGTGGAGTAACGACACGGCGAGAGCCGATCCCAAGGA
GCACCTCATCAAGGGCTCGGTGATCGCGGCGGGCCAGACCGTATTTCCCT
ACCCTATCGAGAGTTTCCCACCGCTTACGAACAGCGAGGCGAGAGCCGAT
CCCAAGGAGCACCTCATCAAGGGCTCGGTGATCGCGGCGGGCCAGACCGT
ATTTCCCTACCCTATCGAGAGTTTCCCACCGCTTACGAACAGCGAGGTAT
ACTACAACGGCACGTCCGAGAGGTTCTGGTGGAACCAAAACTCCGAGGCC
GTGTGCGTTTACGTGCCGGTACCGAAGGGCTTCGACCCCCAGACGGTGGA
GTTCGTGGCTAAGACGAAACAGATCTCGCTCAAGTTCGGCGGGGAGGAGG
TATACTACAACGGCACGTCCGAGAGGTTCTGGTGGAACCAAAACTCCGAG
GCCGTGTGCGTTTACGTGCCGGTACCGAAGGGCTTCGACCCCCAGACGGT
GGAGTTCGTGGCTAAGACGAAACAGATCTCGCTCAAGTTCGGCGGGGAGG
AGGTCCTCTCCGGCACGCTCTTCTATCGAATCGACGGCTACGAATCTCTG
TTCGTCGTGGACTCCCAAAACGACCCGCCATACGTGCAATTGGATTTGTT
CAAGGTCCGAGAGTACCAGAATTGGGAAGACTTGGTCATTGAATATTCAA
GCTTCACACCAGGAGGGGCGCAATAGGTCCTCTCCGGCACGCTCTTCTAT
CGAATCGACGGCTACGAATCTCTGTTCGTCGTGGACTCCCAAAACGACCC
GCCATACGTGCAATTGGATTTGTTCAAGGTCCGAGAGTACCAGAATTGGG
AAGACTTGGTCATTGAATATTCAAGCTTCACACCAGGAGGGGCGCAATAG back to top
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