prot_S-dermatodea_contig1298.1808.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1298.1808.1
Unique Nameprot_S-dermatodea_contig1298.1808.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length227
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1298.1808.1 vs. uniprot
Match: D8LTH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH3_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 8.260e-41
Identity = 106/232 (45.69%), Postives = 141/232 (60.78%), Query Frame = 0 
Query:    1 MFNTAWVTTSTAPIAAAGVLGQPLGRAMVATASSHAIFAMFKFTLAYGALTAGSD--AVRRRGGPSAARRKPKAPTGKSTIGRPQPR--FPRGRGRGRSGPTPATTGATDAKRVTIQVRRSAKTVPRLWLMAVTALGGPGVGAMASVVTHRLGFISFAAVWSSVSRGSVLGTLLSASLCYGGAGTWLAARLAVFQGVFGSVVAVVLSLETLLIVSLFNSVMG-ARRRMSGQG 227
            ++ TAW+TTS  P+AAAGV+GQPL RA+VAT ++HA FA  KF+LA  A++      A   R  P+     P  P        P+ +  FP    R R  P P +  A    R  IQVRRSA++VP+LWLMA+TA GGP +GA+ S V  + G ++  A  SS+SRGSV+  LL+ +LCYGGAGT + AR AVFQG+ G+  A +LS   L++V L N     A+ R SG G
Sbjct:    3 LYGTAWMTTSLGPVAAAGVIGQPLSRALVATCAAHASFAAIKFSLAILAMSNFPPVYAPPPRRHPNNKPTPPTTPRNXXXXKAPRRKLEFPSLSPRRRGPPAPVS--AVPGTR--IQVRRSARSVPKLWLMALTAAGGPAMGAVGSAVAWKAGLVAMPAALSSLSRGSVISALLAGTLCYGGAGTEVVARWAVFQGIMGAPFAALLSPSALMLVYLCNYYWRVAKSRRSGPG 230
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1298.1808.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTH3_ECTSI8.260e-4145.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 214..227
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 124..144
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..123
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 145..163
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..30
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 186..191
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 192..213
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 164..185
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..50
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableTMHMMTMhelixcoord: 121..143
NoneNo IPR availableTMHMMTMhelixcoord: 163..185
NoneNo IPR availableTMHMMTMhelixcoord: 28..50
NoneNo IPR availableTMHMMTMhelixcoord: 192..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1298contigS-dermatodea_contig1298:19401..20081 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1298.1808.1mRNA_S-dermatodea_contig1298.1808.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1298 19401..20087 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1298.1808.1 ID=prot_S-dermatodea_contig1298.1808.1|Name=mRNA_S-dermatodea_contig1298.1808.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=227bp
MFNTAWVTTSTAPIAAAGVLGQPLGRAMVATASSHAIFAMFKFTLAYGAL
TAGSDAVRRRGGPSAARRKPKAPTGKSTIGRPQPRFPRGRGRGRSGPTPA
TTGATDAKRVTIQVRRSAKTVPRLWLMAVTALGGPGVGAMASVVTHRLGF
ISFAAVWSSVSRGSVLGTLLSASLCYGGAGTWLAARLAVFQGVFGSVVAV
VLSLETLLIVSLFNSVMGARRRMSGQG
back to top