mRNA_S-dermatodea_contig1298.1808.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1298.1808.1
Unique NamemRNA_S-dermatodea_contig1298.1808.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1298.1808.1 vs. uniprot
Match: D8LTH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH3_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.580e-41
Identity = 107/234 (45.73%), Postives = 143/234 (61.11%), Query Frame = 1 
Query:    1 LIMFNTAWVTTSTAPIAAAGVLGQPLGRAMVATASSHAIFAMFKFTLAYGALTAGSD--AVRRRGGPSAARRKPKAPTGKSTIGRPQPR--FPRGRGRGRSGPTPATTGATDAKRVTIQVRRSAKTVPRLWLMAVTALGGPGVGAMASVVTHRLGFISFAAVWSSVSRGSVLGTLLSASLCYGGAGTWLAARLAVFQGVFGSVVAVVLSLETLLIVSLFNSVMG-ARRRMSGQG 687
            +I++ TAW+TTS  P+AAAGV+GQPL RA+VAT ++HA FA  KF+LA  A++      A   R  P+     P  P        P+ +  FP    R R  P P +  A    R  IQVRRSA++VP+LWLMA+TA GGP +GA+ S V  + G ++  A  SS+SRGSV+  LL+ +LCYGGAGT + AR AVFQG+ G+  A +LS   L++V L N     A+ R SG G
Sbjct:    1 MILYGTAWMTTSLGPVAAAGVIGQPLSRALVATCAAHASFAAIKFSLAILAMSNFPPVYAPPPRRHPNNKPTPPTTPRNXXXXKAPRRKLEFPSLSPRRRGPPAPVS--AVPGTR--IQVRRSARSVPKLWLMALTAAGGPAMGAVGSAVAWKAGLVAMPAALSSLSRGSVISALLAGTLCYGGAGTEVVARWAVFQGIMGAPFAALLSPSALMLVYLCNYYWRVAKSRRSGPG 230
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1298.1808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTH3_ECTSI1.580e-4145.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1298contigS-dermatodea_contig1298:19401..20087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_005620.1
Exons1
Model size687
Cds size681
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.9266324-CDS-S-dermatodea_contig1298:19400..200811622924269.9266324-CDS-S-dermatodea_contig1298:19400..20081Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 19401..20081 -
1694079139.4975622-CDS-S-dermatodea_contig1298:19400..200811694079139.4975622-CDS-S-dermatodea_contig1298:19400..20081Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1298 19401..20081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924269.9399705-UTR-S-dermatodea_contig1298:20081..200871622924269.9399705-UTR-S-dermatodea_contig1298:20081..20087Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 20082..20087 -
1694079139.5065308-UTR-S-dermatodea_contig1298:20081..200871694079139.5065308-UTR-S-dermatodea_contig1298:20081..20087Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1298 20082..20087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1298.1808.1prot_S-dermatodea_contig1298.1808.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1298 19401..20081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1298.1808.1

>prot_S-dermatodea_contig1298.1808.1 ID=prot_S-dermatodea_contig1298.1808.1|Name=mRNA_S-dermatodea_contig1298.1808.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=227bp
MFNTAWVTTSTAPIAAAGVLGQPLGRAMVATASSHAIFAMFKFTLAYGAL
TAGSDAVRRRGGPSAARRKPKAPTGKSTIGRPQPRFPRGRGRGRSGPTPA
TTGATDAKRVTIQVRRSAKTVPRLWLMAVTALGGPGVGAMASVVTHRLGF
ISFAAVWSSVSRGSVLGTLLSASLCYGGAGTWLAARLAVFQGVFGSVVAV
VLSLETLLIVSLFNSVMGARRRMSGQG
back to top

mRNA from alignment at S-dermatodea_contig1298:19401..20087-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1298.1808.1 ID=mRNA_S-dermatodea_contig1298.1808.1|Name=mRNA_S-dermatodea_contig1298.1808.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=687bp|location=Sequence derived from alignment at S-dermatodea_contig1298:19401..20087- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCATTATGTTCAACACGGCGTGGGTCACCACGAGCACGGCGCCAATAGC
GGCGGCAGGCGTGCTGGGGCAACCCCTCGGGCGAGCAATGGTCGCAACCG
CCTCATCTCACGCGATCTTCGCGATGTTCAAGTTCACCCTCGCTTATGGA
GCCTTAACCGCGGGCAGCGATGCGGTTCGGAGACGTGGTGGGCCCTCCGC
TGCACGACGCAAGCCTAAGGCTCCCACCGGGAAATCAACGATCGGTCGAC
CCCAGCCACGGTTTCCCCGAGGCCGCGGACGCGGTCGTAGCGGGCCAACC
CCGGCGACAACCGGCGCCACCGACGCGAAGCGCGTAACGATCCAAGTGAG
GCGTTCAGCGAAAACGGTCCCACGGCTCTGGCTGATGGCTGTTACGGCCC
TCGGGGGTCCCGGGGTGGGGGCGATGGCTTCAGTCGTGACGCACCGCCTG
GGCTTTATCTCCTTTGCCGCGGTGTGGTCTTCGGTGTCGCGAGGATCGGT
GCTGGGAACGCTCTTGTCAGCGTCGCTTTGCTATGGGGGTGCGGGCACGT
GGCTGGCTGCCCGTTTGGCGGTGTTTCAGGGCGTGTTCGGGAGTGTCGTC
GCCGTCGTGCTTAGCCTCGAAACGCTCCTTATCGTGAGCCTCTTCAATTC
GGTTATGGGAGCAAGGCGGAGGATGTCGGGGCAAGGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1298:19401..20087-

>mRNA_S-dermatodea_contig1298.1808.1 ID=mRNA_S-dermatodea_contig1298.1808.1|Name=mRNA_S-dermatodea_contig1298.1808.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at S-dermatodea_contig1298:19401..20087- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTCAACACGGCGTGGGTCACCACGAGCACGGCGCCAATAGCGGCGGC
AGGCGTGCTGGGGCAACCCCTCGGGCGAGCAATGGTCGCAACCGCCTCAT
CTCACGCGATCTTCGCGATGTTCAAGTTCACCCTCGCTTATGGAGCCTTA
ACCGCGGGCAGCGATGCGGTTCGGAGACGTGGTGGGCCCTCCGCTGCACG
ACGCAAGCCTAAGGCTCCCACCGGGAAATCAACGATCGGTCGACCCCAGC
CACGGTTTCCCCGAGGCCGCGGACGCGGTCGTAGCGGGCCAACCCCGGCG
ACAACCGGCGCCACCGACGCGAAGCGCGTAACGATCCAAGTGAGGCGTTC
AGCGAAAACGGTCCCACGGCTCTGGCTGATGGCTGTTACGGCCCTCGGGG
GTCCCGGGGTGGGGGCGATGGCTTCAGTCGTGACGCACCGCCTGGGCTTT
ATCTCCTTTGCCGCGGTGTGGTCTTCGGTGTCGCGAGGATCGGTGCTGGG
AACGCTCTTGTCAGCGTCGCTTTGCTATGGGGGTGCGGGCACGTGGCTGG
CTGCCCGTTTGGCGGTGTTTCAGGGCGTGTTCGGGAGTGTCGTCGCCGTC
GTGCTTAGCCTCGAAACGCTCCTTATCGTGAGCCTCTTCAATTCGGTTAT
GGGAGCAAGGCGGAGGATGTCGGGGCAAGGAATGTTCAACACGGCGTGGG
TCACCACGAGCACGGCGCCAATAGCGGCGGCAGGCGTGCTGGGGCAACCC
CTCGGGCGAGCAATGGTCGCAACCGCCTCATCTCACGCGATCTTCGCGAT
GTTCAAGTTCACCCTCGCTTATGGAGCCTTAACCGCGGGCAGCGATGCGG
TTCGGAGACGTGGTGGGCCCTCCGCTGCACGACGCAAGCCTAAGGCTCCC
ACCGGGAAATCAACGATCGGTCGACCCCAGCCACGGTTTCCCCGAGGCCG
CGGACGCGGTCGTAGCGGGCCAACCCCGGCGACAACCGGCGCCACCGACG
CGAAGCGCGTAACGATCCAAGTGAGGCGTTCAGCGAAAACGGTCCCACGG
CTCTGGCTGATGGCTGTTACGGCCCTCGGGGGTCCCGGGGTGGGGGCGAT
GGCTTCAGTCGTGACGCACCGCCTGGGCTTTATCTCCTTTGCCGCGGTGT
GGTCTTCGGTGTCGCGAGGATCGGTGCTGGGAACGCTCTTGTCAGCGTCG
CTTTGCTATGGGGGTGCGGGCACGTGGCTGGCTGCCCGTTTGGCGGTGTT
TCAGGGCGTGTTCGGGAGTGTCGTCGCCGTCGTGCTTAGCCTCGAAACGC
TCCTTATCGTGAGCCTCTTCAATTCGGTTATGGGAGCAAGGCGGAGGATG
TCGGGGCAAGGA
back to top