prot_S-dermatodea_contig12937.1787.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12937.1787.1
Unique Nameprot_S-dermatodea_contig12937.1787.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length574
Homology
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BLAST of mRNA_S-dermatodea_contig12937.1787.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.160e-28
Identity = 65/95 (68.42%), Postives = 74/95 (77.89%), Query Frame = 0 
Query:  482 FTGERLLVTGDWVVAPELMPTCPLTSDMLEQQRELVRRLSFRADSDSA--DAQVSKSRVSRLRLATLAADMRCFLRANRGAVFADFVRWYSPANW 574
            FTG RLL TG+  V PEL+P CPLTSDMLEQQRE+ RRLSF A+S       Q S +R SRLRL+TL+ADM+CFL AN GAVFADF+RWYSP NW
Sbjct: 1111 FTGHRLLATGERAVVPELLPACPLTSDMLEQQREIARRLSFAAESSDGFRARQQSNTRASRLRLSTLSADMQCFLSANPGAVFADFLRWYSPPNW 1205
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BLAST of mRNA_S-dermatodea_contig12937.1787.1 vs. uniprot
Match: D7FXM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM6_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 4.040e-7
Identity = 29/39 (74.36%), Postives = 32/39 (82.05%), Query Frame = 0 
Query:  482 FTGERLLVTGDWVVAPELMPTCPLTSDMLEQQRELVRRL 520
            FTG RLL TG+  V PEL+P CPLTSDMLEQQRE+ RRL
Sbjct: 1073 FTGHRLLATGERAVVPELLPACPLTSDMLEQQREIARRL 1111
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12937.1787.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3A9_9PHAE2.160e-2868.42Rab3 GTPase-activating protein catalytic subunit n... [more]
D7FXM6_ECTSI4.040e-774.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026147Rab3 GTPase-activating protein catalytic subunitPFAMPF13890Rab3-GTPase_catcoord: 483..574
e-value: 2.7E-19
score: 69.4
IPR026147Rab3 GTPase-activating protein catalytic subunitPANTHERPTHR21422FAMILY NOT NAMEDcoord: 104..574

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12937contigS-dermatodea_contig12937:2233..4935 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12937.1787.1mRNA_S-dermatodea_contig12937.1787.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12937 2233..5896 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12937.1787.1 ID=prot_S-dermatodea_contig12937.1787.1|Name=mRNA_S-dermatodea_contig12937.1787.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=574bp
MPHDQHSCDDLSQRPRILAAARVALRQEKASRGSLPTRMGEVSAAVEPES
GGLQRLGEGVPGLAGSWCPRPHPICGERGGGGGGWSDELISKQIVTLEPH
PALPHPKPIRSTCLLHQKLQMLNCCVAEQNRVRALVTSTLTLPTEAALFS
PPPPDAASAASALPESEGASTVAAAPTAGDESNATSNGRKAEKRGAADSE
TPPPRMETLGSVGSNSDKGGMADADLAVAAGENVMAGEENRGDRTYGAVV
PHEETQEERSARMKATFAAERDAILRRVGVKKEGDSGGGGGGWWMLGQGR
QNDVQHGASTDSPATLQARPGPDDAVGGNEGGGTDLGEEDSETTAGEHGT
GGAAPGGRHEQYAESEREEAAAAAAPIKRRGKVGGAVRRVGGAVRTVGRA
VKNVRGRPSRDQVNKSVHGVEGVPGQAPVEAEFGGGKEACEKDGNEDGSG
DAGAEGPAADARGWRSGDNAGDGAVGGPRPVFTGERLLVTGDWVVAPELM
PTCPLTSDMLEQQRELVRRLSFRADSDSADAQVSKSRVSRLRLATLAADM
RCFLRANRGAVFADFVRWYSPANW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026147Rab3-GAP_cat_su