prot_S-dermatodea_contig12506.1555.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12506.1555.1
Unique Nameprot_S-dermatodea_contig12506.1555.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length54
Homology
BLAST of mRNA_S-dermatodea_contig12506.1555.1 vs. uniprot
Match: D7FRR0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRR0_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 8.350e-24
Identity = 47/53 (88.68%), Postives = 50/53 (94.34%), Query Frame = 0
Query:    1 MRRMIVHMSESDPYPCVLGIPVKPALFATSKVYVFGCFAVISIKLMYDVISGL 53
            MRRMIVH+   DPYPCVLGIPVKPALFATSKVYVFGCFAVIS+KLMYDVISG+
Sbjct:  740 MRRMIVHIDTLDPYPCVLGIPVKPALFATSKVYVFGCFAVISVKLMYDVISGI 792          
BLAST of mRNA_S-dermatodea_contig12506.1555.1 vs. uniprot
Match: A0A7S2B501_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B501_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.460e-12
Identity = 31/51 (60.78%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    1 MRRMIVHMSESDPYPCVLGIPVKPALFATSKVYVFGCFAVISIKLMYDVIS 51
            M  M   + + DPYPCVLGIPVKPALF T+KVYVF CF VI  ++  DVI 
Sbjct:  135 MEDMRTQIHQFDPYPCVLGIPVKPALFTTAKVYVFICFVVIGTRIFCDVIK 185          
BLAST of mRNA_S-dermatodea_contig12506.1555.1 vs. uniprot
Match: A0A7S3M8I5_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8I5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.440e-6
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0
Query:    4 MIVHMSESDPYPCVLGIPVKPALFATSKVYVFGCFAVISIKLM 46
            +I  +   DPYPC+LGIP+ PALF +SK Y+F  F ++ I+ M
Sbjct:  328 IISQIRRYDPYPCILGIPIMPALFNSSKFYIFVMFTLLGIRTM 370          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12506.1555.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRR0_ECTSI8.350e-2488.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2B501_9STRA2.460e-1260.78Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3M8I5_9STRA3.440e-648.84Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 32..50
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 51..53
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..31
NoneNo IPR availableTMHMMTMhelixcoord: 32..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12506contigS-dermatodea_contig12506:5179..5340 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12506.1555.1mRNA_S-dermatodea_contig12506.1555.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12506 5158..5422 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12506.1555.1 ID=prot_S-dermatodea_contig12506.1555.1|Name=mRNA_S-dermatodea_contig12506.1555.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
MRRMIVHMSESDPYPCVLGIPVKPALFATSKVYVFGCFAVISIKLMYDVI
SGL*
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