mRNA_S-dermatodea_contig12506.1555.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12506.1555.1
Unique NamemRNA_S-dermatodea_contig12506.1555.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12506.1555.1 vs. uniprot
Match: D7FRR0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRR0_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 4.210e-27
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1 
Query:    1 LYPAQEAMRRMIVHMSESDPYPCVLGIPVKPALFATSKVYVFGCFAVISIKLMYDVISGL 180
            L+PAQEAMRRMIVH+   DPYPCVLGIPVKPALFATSKVYVFGCFAVIS+KLMYDVISG+
Sbjct:  733 LHPAQEAMRRMIVHIDTLDPYPCVLGIPVKPALFATSKVYVFGCFAVISVKLMYDVISGI 792
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BLAST of mRNA_S-dermatodea_contig12506.1555.1 vs. uniprot
Match: A0A7S2B501_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B501_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.710e-12
Identity = 32/53 (60.38%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   16 EAMRRMIVHMSESDPYPCVLGIPVKPALFATSKVYVFGCFAVISIKLMYDVIS 174
            E M  M   + + DPYPCVLGIPVKPALF T+KVYVF CF VI  ++  DVI 
Sbjct:  133 ECMEDMRTQIHQFDPYPCVLGIPVKPALFTTAKVYVFICFVVIGTRIFCDVIK 185
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BLAST of mRNA_S-dermatodea_contig12506.1555.1 vs. uniprot
Match: A0A7S3M8I5_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8I5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 6.960e-6
Identity = 21/49 (42.86%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   13 QEAMRRMIVHMSESDPYPCVLGIPVKPALFATSKVYVFGCFAVISIKLM 159
            ++ +  +I  +   DPYPC+LGIP+ PALF +SK Y+F  F ++ I+ M
Sbjct:  322 RQTIAEIISQIRRYDPYPCILGIPIMPALFNSSKFYIFVMFTLLGIRTM 370
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12506.1555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRR0_ECTSI4.210e-2788.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2B501_9STRA1.710e-1260.38Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3M8I5_9STRA6.960e-642.86Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12506contigS-dermatodea_contig12506:5158..5422 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size265
Cds size162
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12506.1555.1prot_S-dermatodea_contig12506.1555.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12506 5179..5340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924250.7663133-UTR-S-dermatodea_contig12506:5157..51781622924250.7663133-UTR-S-dermatodea_contig12506:5157..5178Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12506 5158..5178 +
1694079125.2869868-UTR-S-dermatodea_contig12506:5157..51781694079125.2869868-UTR-S-dermatodea_contig12506:5157..5178Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12506 5158..5178 +
1622924250.7826574-UTR-S-dermatodea_contig12506:5340..54221622924250.7826574-UTR-S-dermatodea_contig12506:5340..5422Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12506 5341..5422 +
1694079125.3064048-UTR-S-dermatodea_contig12506:5340..54221694079125.3064048-UTR-S-dermatodea_contig12506:5340..5422Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12506 5341..5422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924250.7749069-CDS-S-dermatodea_contig12506:5178..53401622924250.7749069-CDS-S-dermatodea_contig12506:5178..5340Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12506 5179..5340 +
1694079125.2954164-CDS-S-dermatodea_contig12506:5178..53401694079125.2954164-CDS-S-dermatodea_contig12506:5178..5340Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12506 5179..5340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12506.1555.1

>prot_S-dermatodea_contig12506.1555.1 ID=prot_S-dermatodea_contig12506.1555.1|Name=mRNA_S-dermatodea_contig12506.1555.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=54bp
MRRMIVHMSESDPYPCVLGIPVKPALFATSKVYVFGCFAVISIKLMYDVI
SGL*
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mRNA from alignment at S-dermatodea_contig12506:5158..5422+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12506.1555.1 ID=mRNA_S-dermatodea_contig12506.1555.1|Name=mRNA_S-dermatodea_contig12506.1555.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=265bp|location=Sequence derived from alignment at S-dermatodea_contig12506:5158..5422+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTTACCCGGCGCAGGAGGCGATGCGGCGAATGATTGTGCACATGAGCGA
GTCTGATCCCTACCCGTGCGTTCTTGGGATCCCGGTCAAGCCGGCGTTGT
TCGCCACATCCAAGGTGTACGTTTTCGGGTGCTTCGCGGTTATTAGCATC
AAGCTCATGTACGACGTTATTTCCGGTTTGTAACTCTGATTTCACGACGG
TGTCGTCGTCGCCCTTTTTGGTTACGGGGTGATTGATACAACAGTTTTCA
CCTTTTGTTGGGGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12506:5158..5422+

>mRNA_S-dermatodea_contig12506.1555.1 ID=mRNA_S-dermatodea_contig12506.1555.1|Name=mRNA_S-dermatodea_contig12506.1555.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at S-dermatodea_contig12506:5158..5422+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGGCGAATGATTGTGCACATGAGCGAGTCTGATCCCTACCCGTGCGT
TCTTGGGATCCCGGTCAAGCCGGCGTTGTTCGCCACATCCAAGGTGTACG
TTTTCGGGTGCTTCGCGGTTATTAGCATCAAGCTCATGTACGACGTTATT
TCCGGTTTGTAAATGCGGCGAATGATTGTGCACATGAGCGAGTCTGATCC
CTACCCGTGCGTTCTTGGGATCCCGGTCAAGCCGGCGTTGTTCGCCACAT
CCAAGGTGTACGTTTTCGGGTGCTTCGCGGTTATTAGCATCAAGCTCATG
TACGACGTTATTTCCGGTTTGTAA
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