prot_S-dermatodea_contig12461.1526.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12461.1526.1
Unique Nameprot_S-dermatodea_contig12461.1526.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length111
Homology
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BLAST of mRNA_S-dermatodea_contig12461.1526.1 vs. uniprot
Match: A0A6H5J6X8_9PHAE (NGN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X8_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 6.160e-40
Identity = 60/108 (55.56%), Postives = 86/108 (79.63%), Query Frame = 0 
Query:    1 EGKLAGIPAEAIRIANKAIASKEEHVDVRVQADDDFHWYLLRCFATYELRCRDAVDSFVHAWELGDHIDELWVPTRQVPKQVGKSVKFKEEPIYQGYIYCHLKMTQQV 108
            +G + G+    +R+AN A+ +K++ + V+V  D++FHWYLLRCFATYE+RCR++V++++    LGD ++E+WVP RQVPKQVGK V FKEEPIYQGYIYC +KM+ +V
Sbjct:  162 DGAIQGLEKGGLRVANAALTTKDDTIGVKVPTDEEFHWYLLRCFATYEMRCRNSVEAYLEGAGLGDRVEEIWVPCRQVPKQVGKKVTFKEEPIYQGYIYCKVKMSPEV 269
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BLAST of mRNA_S-dermatodea_contig12461.1526.1 vs. uniprot
Match: D7FH57_ECTSI (Putative transcription antitermination protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH57_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 3.370e-38
Identity = 60/108 (55.56%), Postives = 85/108 (78.70%), Query Frame = 0 
Query:    1 EGKLAGIPAEAIRIANKAIASKEEHVDVRVQADDDFHWYLLRCFATYELRCRDAVDSFVHAWELGDHIDELWVPTRQVPKQVGKSVKFKEEPIYQGYIYCHLKMTQQV 108
            +G + G+    +R+AN A+ +K++ + V+V  D++FHWYLLRCFATYE+RCR++V+S++    LGD ++E+WVP RQVPKQVG  V FKEEPIYQGYIYC +KM+ +V
Sbjct:  185 DGTIQGLEKGGLRVANAALTTKDDTIGVKVPTDEEFHWYLLRCFATYEVRCRNSVESYLEGAGLGDRVEEIWVPCRQVPKQVGTKVTFKEEPIYQGYIYCKVKMSLEV 292
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BLAST of mRNA_S-dermatodea_contig12461.1526.1 vs. uniprot
Match: F0Y3T4_AURAN (SAP domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3T4_AURAN)

HSP 1 Score: 62.4 bits (150), Expect = 4.930e-9
Identity = 28/87 (32.18%), Postives = 49/87 (56.32%), Query Frame = 0 
Query:   26 VDVRVQADDDFHWYLLRCFATYELRCRDAVDSFV----HAWELGDHIDELWVPTRQVPKQVGKSVKFKEEPIYQGYIYCHLKMTQQV 108
            V V V+  +D+ WY+L+C+   E+ C   ++  +    H  E    ++ + VPT +V    G+ V  KE+ IY GY++C L+M Q++
Sbjct:   39 VPVDVETSEDYEWYILQCYVGNEVWCAATIEEILGKPEHV-EQRSRVETILVPTEKVASTRGRKVYHKEKIIYPGYVFCRLRMEQEL 124
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12461.1526.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J6X8_9PHAE6.160e-4055.56NGN domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FH57_ECTSI3.370e-3855.56Putative transcription antitermination protein n=1... [more]
F0Y3T4_AURAN4.930e-932.18SAP domain-containing protein n=1 Tax=Aureococcus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006645NusG, N-terminalPFAMPF02357NusGcoord: 37..107
e-value: 9.6E-5
score: 22.8
IPR036735NusG, N-terminal domain superfamilyGENE3D3.30.70.940coord: 30..110
e-value: 4.3E-11
score: 44.7
IPR036735NusG, N-terminal domain superfamilySUPERFAMILY82679N-utilization substance G protein NusG, N-terminal domaincoord: 36..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12461contigS-dermatodea_contig12461:851..3570 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12461.1526.1mRNA_S-dermatodea_contig12461.1526.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12461 851..3570 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12461.1526.1 ID=prot_S-dermatodea_contig12461.1526.1|Name=mRNA_S-dermatodea_contig12461.1526.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
EGKLAGIPAEAIRIANKAIASKEEHVDVRVQADDDFHWYLLRCFATYELR
CRDAVDSFVHAWELGDHIDELWVPTRQVPKQVGKSVKFKEEPIYQGYIYC
HLKMTQQVCW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006645NGN_dom
IPR036735NGN_dom_sf