mRNA_S-dermatodea_contig12461.1526.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12461.1526.1
Unique NamemRNA_S-dermatodea_contig12461.1526.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12461.1526.1 vs. uniprot
Match: A0A6H5J6X8_9PHAE (NGN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6X8_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 6.160e-40
Identity = 60/108 (55.56%), Postives = 86/108 (79.63%), Query Frame = 1 
Query:    1 EGKLAGIPAEAIRIANKAIASKEEHVDVRVQADDDFHWYLLRCFATYELRCRDAVDSFVHAWELGDHIDELWVPTRQVPKQVGKSVKFKEEPIYQGYIYCHLKMTQQV 324
            +G + G+    +R+AN A+ +K++ + V+V  D++FHWYLLRCFATYE+RCR++V++++    LGD ++E+WVP RQVPKQVGK V FKEEPIYQGYIYC +KM+ +V
Sbjct:  162 DGAIQGLEKGGLRVANAALTTKDDTIGVKVPTDEEFHWYLLRCFATYEMRCRNSVEAYLEGAGLGDRVEEIWVPCRQVPKQVGKKVTFKEEPIYQGYIYCKVKMSPEV 269
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BLAST of mRNA_S-dermatodea_contig12461.1526.1 vs. uniprot
Match: D7FH57_ECTSI (Putative transcription antitermination protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH57_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 3.370e-38
Identity = 60/108 (55.56%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    1 EGKLAGIPAEAIRIANKAIASKEEHVDVRVQADDDFHWYLLRCFATYELRCRDAVDSFVHAWELGDHIDELWVPTRQVPKQVGKSVKFKEEPIYQGYIYCHLKMTQQV 324
            +G + G+    +R+AN A+ +K++ + V+V  D++FHWYLLRCFATYE+RCR++V+S++    LGD ++E+WVP RQVPKQVG  V FKEEPIYQGYIYC +KM+ +V
Sbjct:  185 DGTIQGLEKGGLRVANAALTTKDDTIGVKVPTDEEFHWYLLRCFATYEVRCRNSVESYLEGAGLGDRVEEIWVPCRQVPKQVGTKVTFKEEPIYQGYIYCKVKMSLEV 292
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BLAST of mRNA_S-dermatodea_contig12461.1526.1 vs. uniprot
Match: F0Y3T4_AURAN (SAP domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3T4_AURAN)

HSP 1 Score: 62.4 bits (150), Expect = 4.930e-9
Identity = 28/87 (32.18%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:   76 VDVRVQADDDFHWYLLRCFATYELRCRDAVDSFV----HAWELGDHIDELWVPTRQVPKQVGKSVKFKEEPIYQGYIYCHLKMTQQV 324
            V V V+  +D+ WY+L+C+   E+ C   ++  +    H  E    ++ + VPT +V    G+ V  KE+ IY GY++C L+M Q++
Sbjct:   39 VPVDVETSEDYEWYILQCYVGNEVWCAATIEEILGKPEHV-EQRSRVETILVPTEKVASTRGRKVYHKEKIIYPGYVFCRLRMEQEL 124
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12461.1526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J6X8_9PHAE6.160e-4055.56NGN domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FH57_ECTSI3.370e-3855.56Putative transcription antitermination protein n=1... [more]
F0Y3T4_AURAN4.930e-932.18SAP domain-containing protein n=1 Tax=Aureococcus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12461contigS-dermatodea_contig12461:851..3570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue6.9e-08
Seed eggNOG ortholog44056.XP_009035306.1
EggNOG free text desc.Transcription termination factor nusG
EggNOG OGs2SDDJ@2759,COG0250@1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative transcription antitermination protein
Ec32 orthologEc-13_000840.1
Exons3
Model size333
Cds size333
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12461.1526.1prot_S-dermatodea_contig12461.1526.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12461 851..3570 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924248.4983852-CDS-S-dermatodea_contig12461:850..9371622924248.4983852-CDS-S-dermatodea_contig12461:850..937Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12461 851..937 +
1694079123.5679348-CDS-S-dermatodea_contig12461:850..9371694079123.5679348-CDS-S-dermatodea_contig12461:850..937Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12461 851..937 +
1622924248.5109751-CDS-S-dermatodea_contig12461:1853..19971622924248.5109751-CDS-S-dermatodea_contig12461:1853..1997Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12461 1854..1997 +
1694079123.5830564-CDS-S-dermatodea_contig12461:1853..19971694079123.5830564-CDS-S-dermatodea_contig12461:1853..1997Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12461 1854..1997 +
1622924248.5220556-CDS-S-dermatodea_contig12461:3468..35701622924248.5220556-CDS-S-dermatodea_contig12461:3468..3570Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12461 3469..3570 +
1694079123.5917256-CDS-S-dermatodea_contig12461:3468..35701694079123.5917256-CDS-S-dermatodea_contig12461:3468..3570Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12461 3469..3570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12461.1526.1

>prot_S-dermatodea_contig12461.1526.1 ID=prot_S-dermatodea_contig12461.1526.1|Name=mRNA_S-dermatodea_contig12461.1526.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
EGKLAGIPAEAIRIANKAIASKEEHVDVRVQADDDFHWYLLRCFATYELR
CRDAVDSFVHAWELGDHIDELWVPTRQVPKQVGKSVKFKEEPIYQGYIYC
HLKMTQQVCW*
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mRNA from alignment at S-dermatodea_contig12461:851..3570+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12461.1526.1 ID=mRNA_S-dermatodea_contig12461.1526.1|Name=mRNA_S-dermatodea_contig12461.1526.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2720bp|location=Sequence derived from alignment at S-dermatodea_contig12461:851..3570+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGGCAAGCTGGCCGGTATACCCGCGGAGGCCATCCGGATCGCGAACAA
GGCCATCGCTTCGAAGGAAGAGCACGTGGACGTCAGGGTGAGTTGCAGTA
GATGGAAAAAATACTTTGTCGGCTGGCCCCATAAGGCAAGGAAATCAGAG
GTATGCCCCCTCTCTTTCAGAGAGTTTTACTCTGTATATACAGTAGTAGT
ATTAATTATACTAGTAGGTAGGTTGCCACGGCTACGCCCGTGTGAGTGTG
AGGTGTGCGTTGGCAGGACGATATGCCGACGGAACGCGACACGGAGGTCG
AACGCGGTCGAGCTACTTACTGTGCGTGTCGCTGCTGTGCGTTTGTGTCG
CTGTTGTGTTTTCGCTTTATTAAAAACATAAAATCGCTCAACATAAACAT
CAAGTTGTTTGGCATCAGACAGGATCCTTGTCTAAAATCAATATACGCAA
TCGGTCATTTTTGCATTAGTTAAAAAAATAATAGGTGATCAATCCCGTAG
GGATTTTTCTCGATCTCTCGATTTTTCTCATCTGACCACGAGCGGGATCG
GCAACCATTGGTGGGCCGGTCGGTTGTGTGACAATCAATAATAATGAAAA
TGTAATCCGTCAACCAGTCAATCAATCAATCAATCAATAAATCAATAACT
CAATCAATCAATCAACCAGTCAGTCAATTGATCTATCAATCAATCAATCA
AACAGTCAATCAATCAATCAACCAATCATTCAGTCGATCAATCCATCAAT
CAATCAATCAGTGAATCAATTAATTAGTCAATAAATCAGTCAATCAGTCA
GTCAATCAATCAAGTAAATCACTCAATCAATAAATCAATCGACCAATCAA
TCGATGAATCAATTAGTCAATCAAACAGTCAAGAATCTATAAAAGCCAAT
CCATCAATACAGCAGTAAGTAGTCTACAATATAATAACGTACATTTAGTA
CTATCAATATTAATATCAAGTGTTTTGCTCCTTGGCCTTTTTTTTCCCAT
AAGGTGCAAGCCGATGACGACTTCCACTGGTACCTCCTGAGGTGCTTCGC
CACGTACGAGCTACGCTGCCGGGATGCCGTCGATAGCTTCGTGCACGCCT
GGGAGCTCGGGGACCACATCGACGAGCTCTGGGTTCCCACGCGCCAGGTA
TGTGTTTTGTGTTTTGTGTTTTGTGTTTTTGTTTTTCGCTTGTTTATTTT
TTATTTTTTGTTTCCTCTCTTGCCATTCCAGTGTTATCCGCGTTTTTCTT
CTCTTCTTTCTCTTTCATTAAGTAGTGTTTCCCTTTAAAAAAGAAAAGGG
AAAAGAAGAAAAAAAACGAGAAGTGCACAAGAAAGAAACAAACAAAAGAA
AGAAAGAAAGAAAAGAAAAAAAAGAAAAAAAGAGAAAGTAAATGTGCAAG
AAAAAACGGAAGAGAGCTTTCGTTTTTCTTTTCATTTTTGTTTTTCCCTG
ATTTTGTTTATAATATTAATACTTCGAAGTAGTAAGCCACACAACAGAGT
TGGCCGAACATGGCAATGAGCTTGATTTTCAGTTTCTTATTACATACCTG
GTACACAGCATGGTGCGATCGAACCAATTATATTTTCGGCAGCGTCTCGG
TTTGGTTTTTCGCTCGACTTAGACTCTCTATGTCCTTTCCTATCCTTCTT
TTTTTTCCCCTTCCCAGTCCTAAACTGCTGTACTTATTAATACTGTACTG
TTGTGCTGTACACCTGTCTATTTATCGCGCATTTAAATATACATCGCGCA
TGTAAAAATAACTTGATTTCAAAGACAGCGAGCTGTTAAACACACCTATG
GGCCTATAGAGGCTCACACTTGCTGTGTGTGGTGCTATAATCCATGCGCC
CTGTGGTTGAACTGGTGACCAACAGCCCAGTAAGCAGCGGAGGACCGGGG
TTCGAATCCCGGCAGAGTCGATATTTATTTATTTTCTCTACGTACCTCCG
CCGCGAAAAGCTTTCGCGAGAGCGTGAGTAAGCAAAATCCGAGAAATCGG
CTAAAGAGCTACGGGAGTGCCGAACCCAATGCCTTCGCGATAAATGTCAA
AGGTGAGAATATAATATACCGGGGACAAGAAAGACGGGATGATTGATCAA
TCCCTTGTGACCACAGATGGACCTACAGTACCTCGGAAAAGAAAGTCTAT
CGTATGTGTGCCAAAAAAAAAAAAAAAAAAAAAAGGATGTCTGTGATGGT
GAAAGGAGGGATAAAAAAAAGAAGTTATAGATGTTGTGTTTGTTTGTTGT
TTTTTTTTTTGAGTNNNNNNNNNNAAATGCCGGGGAAAAAAAAGAGGGGA
AGATTATCAAACTGTAGGGGAACAAAGAGGGAAAAAAAATACCTCGAAAA
AGAAAGAATATCGTATATAAAAAAAAAAAAAAAAAAAAAAAAAACGCTGT
ACGGTCATGGTACAAGTGTGCTTATCCTGAGCGATGTCCTGGTGATGTGT
GTGGTAGCGTTTATGTTCTTCGTGAGCCAAGGTGTAAGACAAAATGTTGT
CGTATTGAGTTATCTGTTGTTTTGATCGAGCCCTATTTCACCTATTTCCC
CCCTCTGCTCCCCCCCCCCCCCCCCCTTTTTTTCCCCTTTTTCGCACTAT
TTGTTGCCCCTGTTGTAGGTGCCGAAGCAAGTGGGTAAGTCGGTGAAGTT
CAAGGAGGAGCCTATCTACCAGGGGTACATCTACTGCCACCTCAAGATGA
CACAGCAGGTGTGTTGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12461:851..3570+

>mRNA_S-dermatodea_contig12461.1526.1 ID=mRNA_S-dermatodea_contig12461.1526.1|Name=mRNA_S-dermatodea_contig12461.1526.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig12461:851..3570+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGGCAAGCTGGCCGGTATACCCGCGGAGGCCATCCGGATCGCGAACAA
GGCCATCGCTTCGAAGGAAGAGCACGTGGACGTCAGGGAGGGCAAGCTGG
CCGGTATACCCGCGGAGGCCATCCGGATCGCGAACAAGGCCATCGCTTCG
AAGGAAGAGCACGTGGACGTCAGGGTGCAAGCCGATGACGACTTCCACTG
GTACCTCCTGAGGTGCTTCGCCACGTACGAGCTACGCTGCCGGGATGCCG
TCGATAGCTTCGTGCACGCCTGGGAGCTCGGGGACCACATCGACGAGCTC
TGGGTTCCCACGCGCCAGGTGCAAGCCGATGACGACTTCCACTGGTACCT
CCTGAGGTGCTTCGCCACGTACGAGCTACGCTGCCGGGATGCCGTCGATA
GCTTCGTGCACGCCTGGGAGCTCGGGGACCACATCGACGAGCTCTGGGTT
CCCACGCGCCAGGTGCCGAAGCAAGTGGGTAAGTCGGTGAAGTTCAAGGA
GGAGCCTATCTACCAGGGGTACATCTACTGCCACCTCAAGATGACACAGC
AGGTGTGTTGGTGAGTGCCGAAGCAAGTGGGTAAGTCGGTGAAGTTCAAG
GAGGAGCCTATCTACCAGGGGTACATCTACTGCCACCTCAAGATGACACA
GCAGGTGTGTTGGTGA
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