prot_S-dermatodea_contig12411.1508.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12411.1508.1
Unique Nameprot_S-dermatodea_contig12411.1508.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length121
Homology
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: A0A6H5LJ12_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ12_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 7.300e-66
Identity = 106/121 (87.60%), Postives = 116/121 (95.87%), Query Frame = 0
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAVVG 121
            +VCFTGVKPTPKERSC+KKLG+SEVE+VLEATHLVAGGSGV LKRTPKLLAG+G+CRFVVDVEWLYQSAK+GKLLDG+E+VLCDAEAEKKWGFNMR SLGRRP AGLLSG+SVHVDP V G
Sbjct: 1355 KVCFTGVKPTPKERSCMKKLGVSEVESVLEATHLVAGGSGVSLKRTPKLLAGLGRCRFVVDVEWLYQSAKDGKLLDGVEYVLCDAEAEKKWGFNMRVSLGRRPEAGLLSGLSVHVDPCVAG 1475          
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: D7G2Z1_ECTSI (Chain A, Crystal Structure Of The Brct Repeat Region From The Mediator Of Dna Damage Checkpoint Protein 1, Mdc1 pdb|2ADO|B Chain B, Crystal Structure Of The Brct Repeat Region From The Mediator Of Dna n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z1_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 1.850e-65
Identity = 105/121 (86.78%), Postives = 116/121 (95.87%), Query Frame = 0
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAVVG 121
            +VCFTGVKPTPKERSC+KKLG+SEVE+VLEATHLVAGGSGV LKRTPKLLAG+G+CRFVVDVEWLYQSAK+GKLLDG+E+VLCDAEAEKKWGFNMR SLGRRP AGLL+G+SVHVDP V G
Sbjct: 1397 KVCFTGVKPTPKERSCMKKLGVSEVESVLEATHLVAGGSGVALKRTPKLLAGLGRCRFVVDVEWLYQSAKDGKLLDGVEYVLCDAEAEKKWGFNMRVSLGRRPEAGLLAGLSVHVDPCVAG 1517          
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: A0A672KIK3_SINGR (Mediator of DNA damage checkpoint protein 1-like n=7 Tax=Cyprininae TaxID=2743694 RepID=A0A672KIK3_SINGR)

HSP 1 Score: 68.2 bits (165), Expect = 7.190e-11
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 0
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAVV 120
            +V FTG+     ER  + +LG S    V + THLV   +    +RT K L  + +   +V  +WL +  K G  L   E++L DAE EKK+ F+++ SL       LL G  +HV P+V+
Sbjct: 1744 KVLFTGLTDQDGER-VVSRLGGSLARGVNDMTHLVTDKA----RRTVKFLCAVARGVPIVTPDWLKKCGKAGHFLSTDEYILKDAEQEKKFSFSLQKSLQTAESQPLLKGYEIHVTPSVI 1858          
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: A0A8C1WLJ5_CYPCA (Mediator of DNA damage checkpoint 1 n=9 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1WLJ5_CYPCA)

HSP 1 Score: 66.2 bits (160), Expect = 3.390e-10
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 0
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAVV 120
            +V FTG+     ER  + +LG S    V + THLV   +    +RT K L  + +   +V  +WL +  K G  L   E++L DAE EKK+ F+++ SL       LL G  +HV P+V+
Sbjct: 1637 KVLFTGLTDQDGER-VVSQLGGSLASGVNDMTHLVTDKA----RRTVKFLCAVARGVPIVTPDWLKKCGKAGHFLSTDEYILKDAEQEKKFSFSLQKSLQTAQTQPLLKGYEIHVTPSVM 1751          
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: UPI0015ABAD7F (mediator of DNA damage checkpoint protein 1 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015ABAD7F)

HSP 1 Score: 65.1 bits (157), Expect = 8.560e-10
Identity = 42/119 (35.29%), Postives = 61/119 (51.26%), Query Frame = 0
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAV 119
            +V FTG+  T  E + + +LG S    V + THLV       ++RT K L  + +   +V  +WL +S + G  L   EF++ DAE EKK+ F +  SL       LL G  VHV  +V
Sbjct: 1428 KVLFTGLTDTSGE-AVVARLGGSLARGVSDMTHLVTD----KVRRTVKFLCAVARGVPIVTTDWLEKSGRRGSFLPPSEFLVKDAEQEKKFSFRLEQSLLTAHAQPLLQGYEVHVTRSV 1541          
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: A0A7S2XF98_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XF98_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 5.480e-9
Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 0
Query:   43 LKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGR-RPGAGLLSGISVHVDPAV 119
            ++RT K L+G+ +C+  V  +++ +S KE K LD  ++++ DAE EKK+GF++  SLGR R GA +L G  V    +V
Sbjct:    5 VRRTTKFLSGLSRCQHAVHYKYVLESFKEKKWLDEDDYMIMDAEKEKKFGFSLPESLGRVRSGAKILEGKRVFQTTSV 82          
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: UPI001C097F61 (mediator of DNA damage checkpoint protein 1 n=2 Tax=Alosa TaxID=34772 RepID=UPI001C097F61)

HSP 1 Score: 62.0 bits (149), Expect = 1.030e-8
Identity = 38/119 (31.93%), Postives = 61/119 (51.26%), Query Frame = 0
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAV 119
            +V FTGV     E + + +LG S  + V + THLV       ++RT K +  + +   +V  +WL +  + G  L   EF++ DAE E+K+ F ++ SL       LL G  +HV  +V
Sbjct: 1929 KVLFTGVSDEAAE-AVVARLGGSMAKGVSDMTHLVTDA----VRRTVKFMCAVARGVPIVTPDWLKKCGRAGSFLPADEFLVKDAEQERKFNFRLQESLSVASSQPLLQGYEIHVTRSV 2042          
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: A0A3B4CUI4_PYGNA (Mediator of DNA damage checkpoint 1 n=2 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4CUI4_PYGNA)

HSP 1 Score: 62.0 bits (149), Expect = 1.040e-8
Identity = 40/119 (33.61%), Postives = 61/119 (51.26%), Query Frame = 0
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAV 119
            +V FTGV     E+  ++ LG    + V + +HLV       ++RT K L  + +   +V  +WL +  K G  L   EF++ DAE EKK+ F ++ SL       LL G  +HV P+V
Sbjct: 1950 KVLFTGVVDEDGEKVLLR-LGGGLAKGVRDMSHLVTD----KVRRTVKFLCAVARGVPIVTPDWLTKCGKAGTFLSPNEFLVKDAEQEKKFNFKLQDSLRAASHQPLLQGYEIHVTPSV 2063          
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: A0A7S2VZ79_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZ79_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.530e-7
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = 0
Query:   10 TPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLG----RRPGAGLLSGISV 113
            T K +     L +   ++V++ATH++AG S   ++RTPKL+A + +   ++ ++WL  S K+  L+    ++L +  AE  + F+M+ +L     RR   GLL G  V
Sbjct:   12 TEKIKKMATVLNLELEDDVMKATHVIAGDSKHSIRRTPKLMAALCRTPNILMLDWLTDSFKQKSLIGCSHYLLNEEAAEINYSFSMKATLREGNQRRLEGGLLGGWKV 119          
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: E0VLZ1_PEDHC (Cytoskeletal protein Sojo, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VLZ1_PEDHC)

HSP 1 Score: 53.9 bits (128), Expect = 6.800e-6
Identity = 34/118 (28.81%), Postives = 56/118 (47.46%), Query Frame = 0
Query:    2 VCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAV 119
            + FTG      ++  I  LG ++  ++ +   L+       ++RT K L  IG    +    WL +  K  K L+   F+L   E+EKKW FN+ T+L +     +L+G +V   P V
Sbjct:  967 IAFTGFDNCNLDKIIIN-LGGNKTNDITKCHVLITD----KVRRTIKFLCAIGLSIPITSPRWLQECKKSNKFLNPWHFILKCEESEKKWNFNLETTLEKSKRQKILNGFTVFATPNV 1079          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5LJ12_9PHAE7.300e-6687.60BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G2Z1_ECTSI1.850e-6586.78Chain A, Crystal Structure Of The Brct Repeat Regi... [more]
A0A672KIK3_SINGR7.190e-1135.00Mediator of DNA damage checkpoint protein 1-like n... [more]
A0A8C1WLJ5_CYPCA3.390e-1035.00Mediator of DNA damage checkpoint 1 n=9 Tax=Cyprin... [more]
UPI0015ABAD7F8.560e-1035.29mediator of DNA damage checkpoint protein 1 n=1 Ta... [more]
A0A7S2XF98_9EUKA5.480e-941.03Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
UPI001C097F611.030e-831.93mediator of DNA damage checkpoint protein 1 n=2 Ta... [more]
A0A3B4CUI4_PYGNA1.040e-833.61Mediator of DNA damage checkpoint 1 n=2 Tax=Pygoce... [more]
A0A7S2VZ79_9STRA2.530e-731.48Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
E0VLZ1_PEDHC6.800e-628.81Cytoskeletal protein Sojo, putative n=1 Tax=Pedicu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190coord: 1..102
e-value: 4.5E-22
score: 80.1
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 10..98
NoneNo IPR availablePANTHERPTHR23196PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEINcoord: 2..119
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 30..82
score: 9.806

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12411contigS-dermatodea_contig12411:905..6694 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12411.1508.1mRNA_S-dermatodea_contig12411.1508.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12411 905..6694 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12411.1508.1 ID=prot_S-dermatodea_contig12411.1508.1|Name=mRNA_S-dermatodea_contig12411.1508.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLL
AGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLG
RRPGAGLLSGISVHVDPAVVG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036420BRCT_dom_sf
IPR001357BRCT_dom