mRNA_S-dermatodea_contig12411.1508.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12411.1508.1
Unique NamemRNA_S-dermatodea_contig12411.1508.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: A0A6H5LJ12_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ12_9PHAE)

HSP 1 Score: 225 bits (573), Expect = 7.300e-66
Identity = 106/121 (87.60%), Postives = 116/121 (95.87%), Query Frame = 1 
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAVVG 363
            +VCFTGVKPTPKERSC+KKLG+SEVE+VLEATHLVAGGSGV LKRTPKLLAG+G+CRFVVDVEWLYQSAK+GKLLDG+E+VLCDAEAEKKWGFNMR SLGRRP AGLLSG+SVHVDP V G
Sbjct: 1355 KVCFTGVKPTPKERSCMKKLGVSEVESVLEATHLVAGGSGVSLKRTPKLLAGLGRCRFVVDVEWLYQSAKDGKLLDGVEYVLCDAEAEKKWGFNMRVSLGRRPEAGLLSGLSVHVDPCVAG 1475
[Close]
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: D7G2Z1_ECTSI (Chain A, Crystal Structure Of The Brct Repeat Region From The Mediator Of Dna Damage Checkpoint Protein 1, Mdc1 pdb|2ADO|B Chain B, Crystal Structure Of The Brct Repeat Region From The Mediator Of Dna n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z1_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 1.850e-65
Identity = 105/121 (86.78%), Postives = 116/121 (95.87%), Query Frame = 1 
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAVVG 363
            +VCFTGVKPTPKERSC+KKLG+SEVE+VLEATHLVAGGSGV LKRTPKLLAG+G+CRFVVDVEWLYQSAK+GKLLDG+E+VLCDAEAEKKWGFNMR SLGRRP AGLL+G+SVHVDP V G
Sbjct: 1397 KVCFTGVKPTPKERSCMKKLGVSEVESVLEATHLVAGGSGVALKRTPKLLAGLGRCRFVVDVEWLYQSAKDGKLLDGVEYVLCDAEAEKKWGFNMRVSLGRRPEAGLLAGLSVHVDPCVAG 1517
[Close]
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: A0A672KIK3_SINGR (Mediator of DNA damage checkpoint protein 1-like n=7 Tax=Cyprininae TaxID=2743694 RepID=A0A672KIK3_SINGR)

HSP 1 Score: 68.2 bits (165), Expect = 7.190e-11
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 1 
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAVV 360
            +V FTG+     ER  + +LG S    V + THLV   +    +RT K L  + +   +V  +WL +  K G  L   E++L DAE EKK+ F+++ SL       LL G  +HV P+V+
Sbjct: 1744 KVLFTGLTDQDGER-VVSRLGGSLARGVNDMTHLVTDKA----RRTVKFLCAVARGVPIVTPDWLKKCGKAGHFLSTDEYILKDAEQEKKFSFSLQKSLQTAESQPLLKGYEIHVTPSVI 1858
[Close]
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: A0A8C1WLJ5_CYPCA (Mediator of DNA damage checkpoint 1 n=9 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1WLJ5_CYPCA)

HSP 1 Score: 66.2 bits (160), Expect = 3.390e-10
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 1 
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAVV 360
            +V FTG+     ER  + +LG S    V + THLV   +    +RT K L  + +   +V  +WL +  K G  L   E++L DAE EKK+ F+++ SL       LL G  +HV P+V+
Sbjct: 1637 KVLFTGLTDQDGER-VVSQLGGSLASGVNDMTHLVTDKA----RRTVKFLCAVARGVPIVTPDWLKKCGKAGHFLSTDEYILKDAEQEKKFSFSLQKSLQTAQTQPLLKGYEIHVTPSVM 1751
[Close]
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: UPI0015ABAD7F (mediator of DNA damage checkpoint protein 1 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015ABAD7F)

HSP 1 Score: 65.1 bits (157), Expect = 8.560e-10
Identity = 42/119 (35.29%), Postives = 61/119 (51.26%), Query Frame = 1 
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAV 357
            +V FTG+  T  E + + +LG S    V + THLV       ++RT K L  + +   +V  +WL +S + G  L   EF++ DAE EKK+ F +  SL       LL G  VHV  +V
Sbjct: 1428 KVLFTGLTDTSGE-AVVARLGGSLARGVSDMTHLVTD----KVRRTVKFLCAVARGVPIVTTDWLEKSGRRGSFLPPSEFLVKDAEQEKKFSFRLEQSLLTAHAQPLLQGYEVHVTRSV 1541
[Close]
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: A0A7S2XF98_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XF98_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 5.480e-9
Identity = 32/78 (41.03%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:  127 LKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGR-RPGAGLLSGISVHVDPAV 357
            ++RT K L+G+ +C+  V  +++ +S KE K LD  ++++ DAE EKK+GF++  SLGR R GA +L G  V    +V
Sbjct:    5 VRRTTKFLSGLSRCQHAVHYKYVLESFKEKKWLDEDDYMIMDAEKEKKFGFSLPESLGRVRSGAKILEGKRVFQTTSV 82
[Close]
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: UPI001C097F61 (mediator of DNA damage checkpoint protein 1 n=2 Tax=Alosa TaxID=34772 RepID=UPI001C097F61)

HSP 1 Score: 62.0 bits (149), Expect = 1.030e-8
Identity = 38/119 (31.93%), Postives = 61/119 (51.26%), Query Frame = 1 
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAV 357
            +V FTGV     E + + +LG S  + V + THLV       ++RT K +  + +   +V  +WL +  + G  L   EF++ DAE E+K+ F ++ SL       LL G  +HV  +V
Sbjct: 1929 KVLFTGVSDEAAE-AVVARLGGSMAKGVSDMTHLVTDA----VRRTVKFMCAVARGVPIVTPDWLKKCGRAGSFLPADEFLVKDAEQERKFNFRLQESLSVASSQPLLQGYEIHVTRSV 2042
[Close]
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: A0A3B4CUI4_PYGNA (Mediator of DNA damage checkpoint 1 n=2 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4CUI4_PYGNA)

HSP 1 Score: 62.0 bits (149), Expect = 1.040e-8
Identity = 40/119 (33.61%), Postives = 61/119 (51.26%), Query Frame = 1 
Query:    1 QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAV 357
            +V FTGV     E+  ++ LG    + V + +HLV       ++RT K L  + +   +V  +WL +  K G  L   EF++ DAE EKK+ F ++ SL       LL G  +HV P+V
Sbjct: 1950 KVLFTGVVDEDGEKVLLR-LGGGLAKGVRDMSHLVTD----KVRRTVKFLCAVARGVPIVTPDWLTKCGKAGTFLSPNEFLVKDAEQEKKFNFKLQDSLRAASHQPLLQGYEIHVTPSV 2063
[Close]
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: A0A7S2VZ79_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZ79_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.530e-7
Identity = 34/108 (31.48%), Postives = 60/108 (55.56%), Query Frame = 1 
Query:   28 TPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLG----RRPGAGLLSGISV 339
            T K +     L +   ++V++ATH++AG S   ++RTPKL+A + +   ++ ++WL  S K+  L+    ++L +  AE  + F+M+ +L     RR   GLL G  V
Sbjct:   12 TEKIKKMATVLNLELEDDVMKATHVIAGDSKHSIRRTPKLMAALCRTPNILMLDWLTDSFKQKSLIGCSHYLLNEEAAEINYSFSMKATLREGNQRRLEGGLLGGWKV 119
[Close]
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Match: E0VLZ1_PEDHC (Cytoskeletal protein Sojo, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VLZ1_PEDHC)

HSP 1 Score: 53.9 bits (128), Expect = 6.800e-6
Identity = 34/118 (28.81%), Postives = 56/118 (47.46%), Query Frame = 1 
Query:    4 VCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLLAGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLGRRPGAGLLSGISVHVDPAV 357
            + FTG      ++  I  LG ++  ++ +   L+       ++RT K L  IG    +    WL +  K  K L+   F+L   E+EKKW FN+ T+L +     +L+G +V   P V
Sbjct:  967 IAFTGFDNCNLDKIIIN-LGGNKTNDITKCHVLITD----KVRRTIKFLCAIGLSIPITSPRWLQECKKSNKFLNPWHFILKCEESEKKWNFNLETTLEKSKRQKILNGFTVFATPNV 1079
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12411.1508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5LJ12_9PHAE7.300e-6687.60BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G2Z1_ECTSI1.850e-6586.78Chain A, Crystal Structure Of The Brct Repeat Regi... [more]
A0A672KIK3_SINGR7.190e-1135.00Mediator of DNA damage checkpoint protein 1-like n... [more]
A0A8C1WLJ5_CYPCA3.390e-1035.00Mediator of DNA damage checkpoint 1 n=9 Tax=Cyprin... [more]
UPI0015ABAD7F8.560e-1035.29mediator of DNA damage checkpoint protein 1 n=1 Ta... [more]
A0A7S2XF98_9EUKA5.480e-941.03Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
UPI001C097F611.030e-831.93mediator of DNA damage checkpoint protein 1 n=2 Ta... [more]
A0A3B4CUI4_PYGNA1.040e-833.61Mediator of DNA damage checkpoint 1 n=2 Tax=Pygoce... [more]
A0A7S2VZ79_9STRA2.530e-731.48Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
E0VLZ1_PEDHC6.800e-628.81Cytoskeletal protein Sojo, putative n=1 Tax=Pedicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12411contigS-dermatodea_contig12411:905..6694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.6
Seed ortholog evalue2.6e-56
Seed eggNOG ortholog2880.D7G2Z1
KEGG koko:K14972,ko:K20780
GOsGO:0000018,GO:0000414,GO:0000416,GO:0000726,GO:0002637,GO:0002639,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006810,GO:0006839,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008213,GO:0009314,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010212,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010638,GO:0016020,GO:0016021,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0018022,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019866,GO:0022857,GO:0023052,GO:0030330,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031090,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032259,GO:0032268,GO:0032270,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034708,GO:0034968,GO:0035065,GO:0035066,GO:0035097,GO:0035556,GO:0036211,GO:0042770,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043414,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044666,GO:0045191,GO:0045830,GO:0045893,GO:0045911,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051052,GO:0051054,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051249,GO:0051251,GO:0051252,GO:0051254,GO:0051276,GO:0051568,GO:0051569,GO:0051571,GO:0051716,GO:0055085,GO:0060255,GO:0060260,GO:0060261,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072331,GO:0080090,GO:0090304,GO:1901360,GO:1901564,GO:1901983,GO:1901985,GO:1902275,GO:1902494,GO:1902680,GO:1903320,GO:1903322,GO:1903506,GO:1903508,GO:1905269,GO:1990234,GO:2000026,GO:2000112,GO:2000142,GO:2000144,GO:2000756,GO:2000758,GO:2001141,GO:2001252
EggNOG free text desc.FHA domain binding
EggNOG OGsKOG2043@1,KOG2043@2759
COG Functional cat.DO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionForkhead-associated (FHA) domain
Ec32 orthologEc-09_004330.1
Exons3
Model size363
Cds size363
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12411.1508.1prot_S-dermatodea_contig12411.1508.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12411 905..6694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924247.2639015-CDS-S-dermatodea_contig12411:904..10091622924247.2639015-CDS-S-dermatodea_contig12411:904..1009Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12411 905..1009 -
1694079122.6819105-CDS-S-dermatodea_contig12411:904..10091694079122.6819105-CDS-S-dermatodea_contig12411:904..1009Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12411 905..1009 -
1622924247.2755144-CDS-S-dermatodea_contig12411:3828..40141622924247.2755144-CDS-S-dermatodea_contig12411:3828..4014Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12411 3829..4014 -
1694079122.6957872-CDS-S-dermatodea_contig12411:3828..40141694079122.6957872-CDS-S-dermatodea_contig12411:3828..4014Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12411 3829..4014 -
1622924247.2890806-CDS-S-dermatodea_contig12411:6622..66941622924247.2890806-CDS-S-dermatodea_contig12411:6622..6694Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12411 6623..6694 -
1694079122.7114403-CDS-S-dermatodea_contig12411:6622..66941694079122.7114403-CDS-S-dermatodea_contig12411:6622..6694Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12411 6623..6694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12411.1508.1

>prot_S-dermatodea_contig12411.1508.1 ID=prot_S-dermatodea_contig12411.1508.1|Name=mRNA_S-dermatodea_contig12411.1508.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
QVCFTGVKPTPKERSCIKKLGISEVENVLEATHLVAGGSGVPLKRTPKLL
AGIGQCRFVVDVEWLYQSAKEGKLLDGLEFVLCDAEAEKKWGFNMRTSLG
RRPGAGLLSGISVHVDPAVVG
back to top

mRNA from alignment at S-dermatodea_contig12411:905..6694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12411.1508.1 ID=mRNA_S-dermatodea_contig12411.1508.1|Name=mRNA_S-dermatodea_contig12411.1508.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5790bp|location=Sequence derived from alignment at S-dermatodea_contig12411:905..6694- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGTGCTTCACCGGGGTGAAGCCAACTCCGAAGGAGCGGTCGTGCAT
AAAAAAGCTGGGGATATCCGAGGTGCGTACAGCAGTAGTTCAGTCGTGTA
GCAGTCTATTAATAGAGGAGTGAGCCTCGTGTGTGTGTGTGTGTGTACCT
TGAGTGTGTTGTGTTCGTGCGTCACGGAGTGGTTGGAAAGAACGAGGAAT
CGAAAAGATGGAAAAAAAAAAGAAAAAAAATGGAATCGTCTCATCGTAGT
TGATTGATTTGATTGGTTGAATTATCACAGTTACAACCGACCGGCCCACC
ATAATAGTGATGGTTGCCGATCCCGCTCCGTGGTCAGATGATAAATCGAG
AGATCGACAATACCCTACGGAACTACTTGTGTATATATTACTATTAATAG
TACATATAGCCCCGTGGTTAAACTGGTGACCAACAGCCTAGTAAGCGGAG
GACCAGGGTTCGAATCCCGGCAGAGTCCATATTTATTTATTATCTCTACG
TACCTGTACCTCCGCCGCGGAAAGCGCGAGAGCGTGAGTAAGCAAAATCC
GAGAAATCGGCGAGTTGTGGGAGTGCCGAACCCAATGCATTCGTGATAAA
AATCAAAGGCAATGTGAGCCCCCCGGGGAGAGATGGGATGATCCCTTGTG
ACCACAGATGGACCTCGGAAAAGAAAGTCTGTCATATGTGTGCCAAAAAA
TGAATAAATAAATATGAAGGATTGGACACAAATTTCTCGGAAACAGAGGG
GGCATACCTCTGATCTCAGGCCTGCTAAAAAAAAAAAATCCTACAGGAAG
GACTGAGCGCACCCGCGATGTCCTTATCGAGTCTGGCAACCGTGACGCAA
AAAAAAAAAAAAAACACAGCTATAGTACGCGAAGAAATAATTGACACAAC
GCTCGGAATCAGCGGAGGACATCCATACCTCGGAGCTTGGGTCTTTGCGA
GGCAGCCCCGTCTCCTAGAGCAAGACCTCGTTACACTCCCCATGCCCCCA
AGTCTCAAAACGAAGGACGAATGCACGAGCAAGAAAGAGCGCGACGCATG
TACTGAGCCCTATCGCACGCTCGCTTCGGAGGTAGAGAGCTCACGGCGCG
CGCGTATTATACTATTAATACTACGGAGGTACACAGTAGTAGTAGGCAGG
AGCAATTTTATCCTCGCTGCTTATTGATTTTTATTTTCAAGCGTGGGCCC
GAACAACACCCTGTCAGTTTTTTGTTTAACCCTCTTGGTGGTACAATTTA
GTTTAGTTAGCACTATTAGATTAGTATTCATAGGGCTCTTCGAAACGATG
AAAAAACTGTCTCGATGCCAGTCGAAAGCTACAGTCCCGTTGCCTTGGGC
GGCTCCGTTCTCTCTCATTCCTGCGTCATATAACCCATGGTTCCCCAGGG
CCCCGATTCAAGCACGCCTCATTACGTGCTAACCGGCGCTCCAAACAGGG
AGCTATAGTATTAGTAGTATAGTACCAAAAGGGTTAAGGTTAAGGTTTCT
GTTGGCATTTTAGGGGGAAGATTGCAGATGTTATTCCGTAAAAAACGTCC
GAATCGGTATTAACTATCATAGTAAAGATAACATACAGACTGGATGGACT
TGATGTGATATTACGGAGGTACCCTATAATCAAGTAATCAGGACCAAATA
TCATAACCATGAATACCCAACTATTCCGACCATGAATTTCCAAAACACCA
AGCAAAAATCTCACGGAAAAAAAAAAAACCACGAGATATATATGGCCATT
TACAAGAACATCGACCTTGAAAATCTCGATAATTCCAGCCTATTTTGATG
TTTCTAGGTTTGAGACTTGTGGCAAATTTGTACCTGTTAACTATGGTCCC
CTGTGATAGTTACCGTGGATAGTGCCTGTTCGCCCCGTGCCGCTCCTTGG
GCTTCCACTCTCCTCCAACCCTACAATTGCACTTATGCTCTTACCCTGGA
CCATCGTTAACGTCAACACTCCATATACAAATATTGAGTTGTTCACAAAC
AAACCAATCATGGCCCCGAGCGTCTTGTTCGTTTTTTGAATTGTAAATCG
TATAGAAGACGTTTATTTAACCCTTTTGGTACTACTGTTTGCAGCGCCGG
TTAGCACGTAATGAGGCGTGCTTGAAGCGGGACCCTGGGGAACTCCATGG
ATTATGACGCAGGAATGAGAGAGAAGAGAACGGAGCCCAAGGGATACGGG
GCTGTAGCTGCCGACTGGCATCGAGAGAGTTTTGGTCGTTTCGAAAAGCC
CTATTAATAATATTTTATTATAGTACAGTACTAATAACTTAATATAATAG
TACCAAGAGGGTTAACGAATCTTGGCCTGGCTGCAAGATTATGGACATGT
TGCAGAGGTCTAACTAAGGCCAGACTGACTTCCTTCAGATGCCGACTTGA
TTGATTGATTGCTTTGGTTGATCAGCACACGTGATATATAATAGCCCATC
GGCTTACATAGTCTGACCCGACTTATGGTCAGATGCTATATAGCAAAGAG
TCAAGGAGAAAATGACAAATCATAAAATCTACTCCCACAGTAGCGCGCGC
ACCCATACGGCAATACCGTCCCTGGTACTTGCTACAGTATAGCACAGAGG
GAAGGAAAAGTATCGCCAGATATAGAGAATGTGGTTTTATCATTAACCGC
GTTCCTCCACAATACATTCCCACCCCGAAGGTGGAAAACGTGCTGGAGGC
GACCCACCTCGTGGCGGGGGGCAGTGGGGTCCCCCTGAAGCGCACCCCAA
AGCTGCTAGCCGGGATAGGCCAGTGCCGCTTCGTCGTAGACGTGGAGTGG
CTCTACCAGAGCGCAAAGGAAGGGAAGCTGCTGGACGGCTTGGAGTTCGT
GCTGTGCGATGCCGAGGTATGGGGCAGCGTGAGCCACCCCCCGCGCGCTT
GCGAGTTCGCTCTCGGACGCTGTGTGTGTGTGTATGTGTGTGTGTGTGTG
CGTGTGTGTGTGTGTGTGTGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGCTCGT
AGTGGTATGGGTTTTTCTTCCGCTGCTTGCGAGTGCGCTCTCGGACGCTG
TGCGCGCGTGTATGCCTTGTGCCTGTCTGTCTACTTCGCATCTATCTATG
CGTGTGTGTCTGTCTGCCTGTCTGTCTGTCTTTGCGCGCGTTCTTGCGTG
TTTATGTGTGTTGCGCGGAGTGGCGTGGTTTTCTCTGCTGGTTGTGATTT
GCTTGCTCTTTTGTTTGCGGCTGGTTCGAAGCTCTGGAAAGGAATCTTGT
CGCCCTCCATTCCCAACGGCTTAGAGCTATGATAGAGAGGTCAGAGTGCC
TCTCGGTTTCGTGGGGGCAAGCGTCGAGCGCTGGTTGTTTCCGGTTGCCG
GCTCCCCGCTCTTTTCACCGGTACTATTATGGAGGGCCATAGCTAACTTT
AACAGGTCCAAATGTGATCAAACACAAGTCTCAACCTAGAGAAACAAGAA
AAGGCTGGAATTTATCCAGATTTCATGGTCGATGCTGTCGTAGTACATGG
CAATATCTCGTGTTGTTTTTCTTCGCGAGAGAGACCCTTTTGGTGATGTT
TGGGTATGATGTTCATGGTCGGAATATAACATTATCTAGTACCAGGTAGG
TATTAATAGCCACGGCTACGCCCGTGAGGTGTGTGCGTTGGCAGAACGAT
ATGCCGGCGGCGGTCGACCGTGGCCGACAGCGGCCGAGCGGGGCCGAGGC
CGACCGTGGCCGACCGCGGCCGAGCGGGCGCAAAAACCAAGTGTGGCTAC
CTACTGCTGTGCACTCAAAATACACATCGTACAGGGGTATTTGAAAATGT
AAATCGTATGGATTTCAGTATATCCGTCTGGCCTCAGCTTGAACATGTAA
TCGTATGGGAATTTCGTAAACCCATCTGGCTTCAGGTTGAAAATGTAAAT
CGTATAGGATTAAAAAAATATATATGGTTGACTCTTGTATTAATTAATAA
GGATAGTAGGGTAGTCATGGTCGTGAGATTTGGTCCTGGTTACTCTGTGC
CTCTGTAAACGCTGGAGAGGTGAACGCGGAGAGCAGCGTAGTAGCGTTCG
GCTCTCGAAGACTCCCTCGGTCGTCCCTCCTCTCGAAACCCCGAGGGGAC
AGTCAGGTAGCTGGAGGAAGGTTTTCACTATTTAGTAGGCGTTCTCGCCA
TCCTGTTTTTGCGGTAGAATCGGGCAGGCTCGCTCGAATACCTTCGCACG
AGCGCCGTACCGCGTTGTTTTGTCGTTTGAGCGTGCGGCCGATTGCGCCG
ATATATATATATATGTATATTTTTACCGCAAGCTTTTTTTTACGGTGCGG
CCGATTGCGCCGAGTTTTTGTTTTTTACCGCAAGCTTTCTTTTACGAAGA
TACCTAACATTAAAACACACATGTATCAATGTGGTATGTCCGGCCTTGAT
TGATTGATTGATTGTTTGATTGATTTTCACGCTTAGTAACCGACCGGCCG
GCAGCATTGTTGCAATCGCAAAAGTGGATGCTGATCCCGCTACCTCGTGG
TTACATGAAGGCACAAGAGCAAGTTCAAATACAGCACCCCAGTCATACGC
CGAACAAAAAAACTGATGGCCTTACATGTTTCTTTATTACAAAAAAACAA
ATGTGCGAGCTTCCGGCCGGAAATGTCGGAAAACATACTTGAAGTATGTA
TATATTTATTACAAGGTGTTCGCAGGCCAACGATGAAAAACACGACTCTA
TAGTATACTAGGACGGAGGACCATAGTTAACAGGTCAAATTCGTCACAAA
TATTTACCTAGCAAAGCATAATAGGCCGGAACCATATGGGTATTTCACGG
TCGCTGTTTGTCGTATAGGCCAGGCCTCGTGCTGATTTTTTGGTTCATGA
GTTTTTGCTGTCGTTTGGGTTTTCATGGTCGAAACAGTTGCGTGTTTATG
GTCGTGAGATTTTGGTCCTGATTACTCTGTACCTCCGTAAATAGTAAATA
GTACGCAAAATTGGGTCCTGATTCCTGCTTTGTTTTTTTGTTTTGTTTTG
TTTTTTGGCACACATATGACATACTTTCTTTTCCGAGGTCCATCTGTGGT
CACAAGGGATCATCCCATCTCTCCCCGGTTCTCACCTTGCCTTTGATTTT
TATCGCGCGTTGGGTTCGGCACTCCGGCAGCTCGCCGATTTCTCGGATTT
TGCTTACTCACGCTCTCGCGCTTTCCGCGGCGGAGGTACGTAGACATAAT
ATATAAATATCGACTCTGCCGGGANNNNNNNNNNCCCCGGTCCTCCGCTT
ACTGGGCTGTTGGTCACCAGTTCAACCACGGGGCGCGCGGTTGTTAGTGT
ACCTCCGTAATTGCCTTCCTTGGTCGTGAGGGAGAAAACAGTGCCAATTT
ACCACGCTTGGACGCTAGCACAAGCCCTCGTGAGAAGAAGCGTGACTCGA
GAAGCGGATTATAGTGCTTTCTGTTTTCCTTTGTTTTCCAACGTCCTCGC
TCGCGGGCGAGTCCCCAATTCATACCAGTAGCTCGCCGTCGCTTCGACCG
ACAGAGTTGTTCGCCCATTAACATCGTAGCTTGCCGGCACTGCTACTGCT
GCTATCGTGTGGTCCGCTCTCGTGTTTGCGCTGTTAGCGTAACACGGTAA
ATCGATTTACTTCTTTTTTTATCAACGAAAAACAGGCAGAGAAGAAGTGG
GGCTTCAACATGCGCACCTCACTCGGACGGAGGCCTGGCGCAGGCCTGCT
GTCCGGAATTTCGGTCCACGTCGACCCGGCCGTGGTGGGT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12411:905..6694-

>mRNA_S-dermatodea_contig12411.1508.1 ID=mRNA_S-dermatodea_contig12411.1508.1|Name=mRNA_S-dermatodea_contig12411.1508.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at S-dermatodea_contig12411:905..6694- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTGTGCTTCACCGGGGTGAAGCCAACTCCGAAGGAGCGGTCGTGCAT
AAAAAAGCTGGGGATATCCGAGCAGGTGTGCTTCACCGGGGTGAAGCCAA
CTCCGAAGGAGCGGTCGTGCATAAAAAAGCTGGGGATATCCGAGGTGGAA
AACGTGCTGGAGGCGACCCACCTCGTGGCGGGGGGCAGTGGGGTCCCCCT
GAAGCGCACCCCAAAGCTGCTAGCCGGGATAGGCCAGTGCCGCTTCGTCG
TAGACGTGGAGTGGCTCTACCAGAGCGCAAAGGAAGGGAAGCTGCTGGAC
GGCTTGGAGTTCGTGCTGTGCGATGCCGAGGTGGAAAACGTGCTGGAGGC
GACCCACCTCGTGGCGGGGGGCAGTGGGGTCCCCCTGAAGCGCACCCCAA
AGCTGCTAGCCGGGATAGGCCAGTGCCGCTTCGTCGTAGACGTGGAGTGG
CTCTACCAGAGCGCAAAGGAAGGGAAGCTGCTGGACGGCTTGGAGTTCGT
GCTGTGCGATGCCGAGGCAGAGAAGAAGTGGGGCTTCAACATGCGCACCT
CACTCGGACGGAGGCCTGGCGCAGGCCTGCTGTCCGGAATTTCGGTCCAC
GTCGACCCGGCCGTGGTGGGTGCAGAGAAGAAGTGGGGCTTCAACATGCG
CACCTCACTCGGACGGAGGCCTGGCGCAGGCCTGCTGTCCGGAATTTCGG
TCCACGTCGACCCGGCCGTGGTGGGT
back to top