prot_S-dermatodea_contig12381.1490.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12381.1490.1
Unique Nameprot_S-dermatodea_contig12381.1490.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length230
Homology
BLAST of mRNA_S-dermatodea_contig12381.1490.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 9.610e-52
Identity = 108/230 (46.96%), Postives = 128/230 (55.65%), Query Frame = 0
Query:    8 DINDDATYTVNTLTFYKQEPDVLYAQVLSFVTGGNSATCGVQLDIGEEYLFGFYRSAEDPFGSDAGG---QLTVGLCDLVQVWSSVDENELA----GCGVDPCGGSCGEFQAEVLSVVDMSKSPLSSHIKLDCVDKDQDARTHLVFICSVIRSPLNVEAYPRSSPVTLPCGACFDGNHACMHYERNGKWYCSETC-TEGACPAESTCETRKRKWCRSSTYSGCPEKRSCK 229
            DIN+D T+TV     Y  + D      +SFVTGGNSA CGV L IGEEYL G Y + +DPF S  GG   QLTVGLCDL +VWS V ++E A    GCG   C  SCGEFQ E L   D  +S        D  D+  D  T ++   + IR+P    A   S   T  C    D    C+ Y RNGK+YCS+TC +  AC     C TR RKWCRSS Y GCPEKR C+
Sbjct:   65 DINEDVTFTVQVNAVYSGDVDG--QDEISFVTGGNSAICGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLTVGLCDLARVWSDVPDDEKADLEAGCG--ECDVSCGEFQ-ECLLYEDGLESEYYCADTCDDPDRCADNETCVLTEVACIRAPCPPVA---SCEATENCDGACDDTQECLQYARNGKYYCSDTCDSPAACEEGEECSTRPRKWCRSSGYDGCPEKRRCR 286          
BLAST of mRNA_S-dermatodea_contig12381.1490.1 vs. uniprot
Match: A0A6H5L054_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L054_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 7.460e-11
Identity = 45/119 (37.82%), Postives = 55/119 (46.22%), Query Frame = 0
Query:    3 RTDGEDINDDATYTVNTLTFYKQEP------DVLYAQVLSFVTGGNSATCGVQLDI--GEEYLFGFYRSAEDPFGSDAGGQLTVGLCDLVQVWSSVDENELA-GCG-VDPCGGSCGEFQ 111
            R DGEDIN D  YT+ T+  +K E       D   +Q     T GNS  CGV +D     EYL    R ++       G     G+C + + W   D  EL  GC   DPC G CGEFQ
Sbjct:    9 RVDGEDINSDDIYTLETIEVFKAEDPGPNEYDEAGSQ-FEITTAGNSGLCGVYMDADGSTEYLIDLNRQSD-------GSLRAAGICGVFREWDEADRAELEEGCDDYDPCNGECGEFQ 119          
BLAST of mRNA_S-dermatodea_contig12381.1490.1 vs. uniprot
Match: A0A2G9U1U7_TELCI (NTR domain-containing protein (Fragment) n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9U1U7_TELCI)

HSP 1 Score: 52.0 bits (123), Expect = 2.390e-5
Identity = 31/80 (38.75%), Postives = 42/80 (52.50%), Query Frame = 0
Query:   15 YTVNTLTFYKQEPDVLYAQVLSFVTGGNSATCGVQLDIGEEYLFGFYRSAEDPFGSDAGGQLTVGLCDLVQVWSSVDENE 94
            YTV  +  Y++ P  L       VT  NSA CG++L +G+EYL G         G++  G L   LC LVQ WS+V  N+
Sbjct:   23 YTVEHICVYRK-PATLKQLSNEIVTASNSAACGIELTVGQEYLIG---------GAEDYGVLRGYLCGLVQEWSTVPNND 92          
BLAST of mRNA_S-dermatodea_contig12381.1490.1 vs. uniprot
Match: W2TPY4_NECAM (Tissue inhibitor of metalloproteinase n=1 Tax=Necator americanus TaxID=51031 RepID=W2TPY4_NECAM)

HSP 1 Score: 52.0 bits (123), Expect = 5.000e-5
Identity = 34/93 (36.56%), Postives = 44/93 (47.31%), Query Frame = 0
Query:   12 DATYTVNTLTFYKQEPDVLYAQVLSFVTGGNSATCGVQLDIGEEYLFGFYRSAEDPFGS-DAGGQLTVGLCDLVQVWSSVDENELAGCGVDPC 103
            D TY V  +  Y++ P  +       VT  NSA CG++LD+G EYL G         GS D  G +   LC +V+ WS V   E A  G   C
Sbjct:   55 DITYVVQHICVYRK-PSKIKKLSNQIVTASNSAACGIELDVGVEYLLG---------GSVDEKGVVRSFLCGIVEKWSDVPSKEKADLGKYKC 137          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12381.1490.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LCN7_ECTSI9.610e-5246.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L054_9PHAE7.460e-1137.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2G9U1U7_TELCI2.390e-538.75NTR domain-containing protein (Fragment) n=1 Tax=T... [more]
W2TPY4_NECAM5.000e-536.56Tissue inhibitor of metalloproteinase n=1 Tax=Neca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.120coord: 2..99
e-value: 2.8E-6
score: 29.4
IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldSUPERFAMILY50242TIMP-likecoord: 8..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12381contigS-dermatodea_contig12381:4063..5340 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12381.1490.1mRNA_S-dermatodea_contig12381.1490.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12381 4057..5340 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12381.1490.1 ID=prot_S-dermatodea_contig12381.1490.1|Name=mRNA_S-dermatodea_contig12381.1490.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=230bp
MGRTDGEDINDDATYTVNTLTFYKQEPDVLYAQVLSFVTGGNSATCGVQL
DIGEEYLFGFYRSAEDPFGSDAGGQLTVGLCDLVQVWSSVDENELAGCGV
DPCGGSCGEFQAEVLSVVDMSKSPLSSHIKLDCVDKDQDARTHLVFICSV
IRSPLNVEAYPRSSPVTLPCGACFDGNHACMHYERNGKWYCSETCTEGAC
PAESTCETRKRKWCRSSTYSGCPEKRSCK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008993TIMP-like_OB-fold