mRNA_S-dermatodea_contig12381.1490.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12381.1490.1
Unique NamemRNA_S-dermatodea_contig12381.1490.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12381.1490.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 7.280e-52
Identity = 109/239 (45.61%), Postives = 132/239 (55.23%), Query Frame = 1 
Query:    1 TLMGRTDGEDINDDATYTVNTLTFYKQEPDVLYAQVLSFVTGGNSATCGVQLDIGEEYLFGFYRSAEDPFGSDAGG---QLTVGLCDLVQVWSSVDENELA----GCGVDPCGGSCGEFQAEVLSVVDMSKSPLSSHIKLDCVDKDQDARTHLVFICSVIRSPLNVEAYPRSSPVTLPCGACFDGNHACMHYERNGKWYCSETC-TEGACPAESTCETRKRKWCRSSTYSGCPEKRSCK 693
            T + ++   DIN+D T+TV     Y  + D      +SFVTGGNSA CGV L IGEEYL G Y + +DPF S  GG   QLTVGLCDL +VWS V ++E A    GCG   C  SCGEFQ E L   D  +S        D  D+  D  T ++   + IR+P    A   S   T  C    D    C+ Y RNGK+YCS+TC +  AC     C TR RKWCRSS Y GCPEKR C+
Sbjct:   56 TALSKSAQTDINEDVTFTVQVNAVYSGDVDG--QDEISFVTGGNSAICGVDLTIGEEYLLGLYPAGDDPFDSTGGGTAGQLTVGLCDLARVWSDVPDDEKADLEAGCG--ECDVSCGEFQ-ECLLYEDGLESEYYCADTCDDPDRCADNETCVLTEVACIRAPCPPVA---SCEATENCDGACDDTQECLQYARNGKYYCSDTCDSPAACEEGEECSTRPRKWCRSSGYDGCPEKRRCR 286
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BLAST of mRNA_S-dermatodea_contig12381.1490.1 vs. uniprot
Match: A0A6H5L054_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L054_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.500e-10
Identity = 45/119 (37.82%), Postives = 55/119 (46.22%), Query Frame = 1 
Query:   13 RTDGEDINDDATYTVNTLTFYKQEP------DVLYAQVLSFVTGGNSATCGVQLDI--GEEYLFGFYRSAEDPFGSDAGGQLTVGLCDLVQVWSSVDENELA-GCG-VDPCGGSCGEFQ 339
            R DGEDIN D  YT+ T+  +K E       D   +Q     T GNS  CGV +D     EYL    R ++       G     G+C + + W   D  EL  GC   DPC G CGEFQ
Sbjct:    9 RVDGEDINSDDIYTLETIEVFKAEDPGPNEYDEAGSQ-FEITTAGNSGLCGVYMDADGSTEYLIDLNRQSD-------GSLRAAGICGVFREWDEADRAELEEGCDDYDPCNGECGEFQ 119
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BLAST of mRNA_S-dermatodea_contig12381.1490.1 vs. uniprot
Match: A0A2G9U1U7_TELCI (NTR domain-containing protein (Fragment) n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9U1U7_TELCI)

HSP 1 Score: 51.6 bits (122), Expect = 3.370e-5
Identity = 31/80 (38.75%), Postives = 42/80 (52.50%), Query Frame = 1 
Query:   49 YTVNTLTFYKQEPDVLYAQVLSFVTGGNSATCGVQLDIGEEYLFGFYRSAEDPFGSDAGGQLTVGLCDLVQVWSSVDENE 288
            YTV  +  Y++ P  L       VT  NSA CG++L +G+EYL G         G++  G L   LC LVQ WS+V  N+
Sbjct:   23 YTVEHICVYRK-PATLKQLSNEIVTASNSAACGIELTVGQEYLIG---------GAEDYGVLRGYLCGLVQEWSTVPNND 92
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BLAST of mRNA_S-dermatodea_contig12381.1490.1 vs. uniprot
Match: W2TPY4_NECAM (Tissue inhibitor of metalloproteinase n=1 Tax=Necator americanus TaxID=51031 RepID=W2TPY4_NECAM)

HSP 1 Score: 51.6 bits (122), Expect = 7.030e-5
Identity = 34/93 (36.56%), Postives = 44/93 (47.31%), Query Frame = 1 
Query:   40 DATYTVNTLTFYKQEPDVLYAQVLSFVTGGNSATCGVQLDIGEEYLFGFYRSAEDPFGS-DAGGQLTVGLCDLVQVWSSVDENELAGCGVDPC 315
            D TY V  +  Y++ P  +       VT  NSA CG++LD+G EYL G         GS D  G +   LC +V+ WS V   E A  G   C
Sbjct:   55 DITYVVQHICVYRK-PSKIKKLSNQIVTASNSAACGIELDVGVEYLLG---------GSVDEKGVVRSFLCGIVEKWSDVPSKEKADLGKYKC 137
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12381.1490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LCN7_ECTSI7.280e-5245.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L054_9PHAE1.500e-1037.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2G9U1U7_TELCI3.370e-538.75NTR domain-containing protein (Fragment) n=1 Tax=T... [more]
W2TPY4_NECAM7.030e-536.56Tissue inhibitor of metalloproteinase n=1 Tax=Neca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12381contigS-dermatodea_contig12381:4057..5340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.3
Seed ortholog evalue1.1e-42
Seed eggNOG ortholog2880.D8LCN7
EggNOG OGs2D2W6@1,2SP8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size696
Cds size690
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12381.1490.1prot_S-dermatodea_contig12381.1490.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12381 4063..5340 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.0713794-UTR-S-dermatodea_contig12381:4056..40621622924246.0713794-UTR-S-dermatodea_contig12381:4056..4062Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12381 4057..4062 +
1694079121.8909807-UTR-S-dermatodea_contig12381:4056..40621694079121.8909807-UTR-S-dermatodea_contig12381:4056..4062Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12381 4057..4062 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924246.0813732-CDS-S-dermatodea_contig12381:4062..43951622924246.0813732-CDS-S-dermatodea_contig12381:4062..4395Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12381 4063..4395 +
1694079121.904047-CDS-S-dermatodea_contig12381:4062..43951694079121.904047-CDS-S-dermatodea_contig12381:4062..4395Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12381 4063..4395 +
1622924246.0918155-CDS-S-dermatodea_contig12381:4406..44811622924246.0918155-CDS-S-dermatodea_contig12381:4406..4481Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12381 4407..4481 +
1694079121.9135857-CDS-S-dermatodea_contig12381:4406..44811694079121.9135857-CDS-S-dermatodea_contig12381:4406..4481Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12381 4407..4481 +
1622924246.1003616-CDS-S-dermatodea_contig12381:4556..46851622924246.1003616-CDS-S-dermatodea_contig12381:4556..4685Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12381 4557..4685 +
1694079121.9229448-CDS-S-dermatodea_contig12381:4556..46851694079121.9229448-CDS-S-dermatodea_contig12381:4556..4685Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12381 4557..4685 +
1622924246.1103523-CDS-S-dermatodea_contig12381:5187..53401622924246.1103523-CDS-S-dermatodea_contig12381:5187..5340Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12381 5188..5340 +
1694079121.9309406-CDS-S-dermatodea_contig12381:5187..53401694079121.9309406-CDS-S-dermatodea_contig12381:5187..5340Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12381 5188..5340 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12381.1490.1

>prot_S-dermatodea_contig12381.1490.1 ID=prot_S-dermatodea_contig12381.1490.1|Name=mRNA_S-dermatodea_contig12381.1490.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=230bp
MGRTDGEDINDDATYTVNTLTFYKQEPDVLYAQVLSFVTGGNSATCGVQL
DIGEEYLFGFYRSAEDPFGSDAGGQLTVGLCDLVQVWSSVDENELAGCGV
DPCGGSCGEFQAEVLSVVDMSKSPLSSHIKLDCVDKDQDARTHLVFICSV
IRSPLNVEAYPRSSPVTLPCGACFDGNHACMHYERNGKWYCSETCTEGAC
PAESTCETRKRKWCRSSTYSGCPEKRSCK*
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mRNA from alignment at S-dermatodea_contig12381:4057..5340+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12381.1490.1 ID=mRNA_S-dermatodea_contig12381.1490.1|Name=mRNA_S-dermatodea_contig12381.1490.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1284bp|location=Sequence derived from alignment at S-dermatodea_contig12381:4057..5340+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGTTAATGGGCAGGACGGACGGAGAAGACATTAACGACGATGCGACCTA
CACCGTCAACACGTTGACCTTCTACAAACAAGAGCCCGATGTGCTGTACG
CGCAAGTGCTCAGCTTTGTCACCGGAGGCAACAGTGCCACTTGCGGAGTC
CAGCTAGACATCGGCGAGGAGTATCTTTTCGGCTTCTATCGCTCCGCCGA
AGATCCGTTTGGCTCGGATGCGGGTGGCCAACTCACGGTGGGGCTGTGCG
ATCTGGTGCAAGTCTGGAGCTCGGTCGACGAGAACGAGTTGGCCGGGTGT
GGAGTCGATCCGTGCGGTGGAAGTTGTGGCGAATTTCAGGTGCAAACGAG
GCAGAGGTTTTGAGTGTTGTAGACATGTCGAAAAGTCCTCTTAGCTCACA
TATAAAACTCGACTGCGTCGACAAGGTAATATTGTGAAGTCGCTCCAGGA
CAGACATACGCTAGTACAAATCCCCGTGGTTTAACTCATATGGGTGAAAG
GACCAGGATGCAAGGACACATCTGGTATTTATTTGTAGCGTCATCAGGAG
TCCATTGAACGTCGAAGCCTACCCTAGGTCCAGCCCAGTAACGCTACCAT
GTGGAGCATGCTTCGATGGAAACCACGCCGTTCGACCAAAACGCAGCAAA
CCAAGCGTAGCTCGTATCGTCGCGTCAAACTGAGCCTTCCAATTCACGAG
CCTGCTAGATAAGCCGCTTATCATAAGCCTGGTTCAGAACACCACCAAGA
ATTGGTGCCGTACTCCAGAGTACCTTGGTGCGGCAAATAAGGATGACTGG
GATGGTTCAAAACAGATCCTGTCCGCAGGAAGACAAAAACAGCGAGGATG
CGGTGGACGTGTTCAAACGTATCGTCCTAGTTGTGCAATTCGGAAGCCCG
GGCAGGTTGTAGGGCTATGATTGAATGGACACCAGACTCTAAGTTGTATT
GTCAAAAAGAATAGGTAGTGTGCATCCTGACATTGTGAGAGTGCTCCCCG
CCCGTGTGACTCAATGGTACATGCATGAAGCATGAGGCCCAAACGCCACA
ATACCCAGCCGTTACCCGTGAGAATGCGCAAAATAATTTGAACCCATGTC
CACGCGGTATTTCTCGCTTGCTTCCTAGGAGTGCATGCACTACGAGAGGA
ACGGGAAATGGTACTGCTCCGAAACATGCACGGAAGGGGCGTGTCCCGCG
GAGAGCACGTGCGAGACTCGCAAGAGGAAGTGGTGCCGCAGCAGCACCTA
CAGCGGCTGCCCCGAGAAGCGGTCTTGCAAATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12381:4057..5340+

>mRNA_S-dermatodea_contig12381.1490.1 ID=mRNA_S-dermatodea_contig12381.1490.1|Name=mRNA_S-dermatodea_contig12381.1490.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1380bp|location=Sequence derived from alignment at S-dermatodea_contig12381:4057..5340+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCAGGACGGACGGAGAAGACATTAACGACGATGCGACCTACACCGT
CAACACGTTGACCTTCTACAAACAAGAGCCCGATGTGCTGTACGCGCAAG
TGCTCAGCTTTGTCACCGGAGGCAACAGTGCCACTTGCGGAGTCCAGCTA
GACATCGGCGAGGAGTATCTTTTCGGCTTCTATCGCTCCGCCGAAGATCC
GTTTGGCTCGGATGCGGGTGGCCAACTCACGGTGGGGCTGTGCGATCTGG
TGCAAGTCTGGAGCTCGGTCGACGAGAACGAGTTGGCCGGGTGTGGAGTC
GATCCGTGCGGTGGAAGTTGTGGCGAATTTCAGATGGGCAGGACGGACGG
AGAAGACATTAACGACGATGCGACCTACACCGTCAACACGTTGACCTTCT
ACAAACAAGAGCCCGATGTGCTGTACGCGCAAGTGCTCAGCTTTGTCACC
GGAGGCAACAGTGCCACTTGCGGAGTCCAGCTAGACATCGGCGAGGAGTA
TCTTTTCGGCTTCTATCGCTCCGCCGAAGATCCGTTTGGCTCGGATGCGG
GTGGCCAACTCACGGTGGGGCTGTGCGATCTGGTGCAAGTCTGGAGCTCG
GTCGACGAGAACGAGTTGGCCGGGTGTGGAGTCGATCCGTGCGGTGGAAG
TTGTGGCGAATTTCAGGCAGAGGTTTTGAGTGTTGTAGACATGTCGAAAA
GTCCTCTTAGCTCACATATAAAACTCGACTGCGTCGACAAGGCAGAGGTT
TTGAGTGTTGTAGACATGTCGAAAAGTCCTCTTAGCTCACATATAAAACT
CGACTGCGTCGACAAGGACCAGGATGCAAGGACACATCTGGTATTTATTT
GTAGCGTCATCAGGAGTCCATTGAACGTCGAAGCCTACCCTAGGTCCAGC
CCAGTAACGCTACCATGTGGAGCATGCTTCGATGGAAACCACGCCGACCA
GGATGCAAGGACACATCTGGTATTTATTTGTAGCGTCATCAGGAGTCCAT
TGAACGTCGAAGCCTACCCTAGGTCCAGCCCAGTAACGCTACCATGTGGA
GCATGCTTCGATGGAAACCACGCCTGCATGCACTACGAGAGGAACGGGAA
ATGGTACTGCTCCGAAACATGCACGGAAGGGGCGTGTCCCGCGGAGAGCA
CGTGCGAGACTCGCAAGAGGAAGTGGTGCCGCAGCAGCACCTACAGCGGC
TGCCCCGAGAAGCGGTCTTGCAAATAATGCATGCACTACGAGAGGAACGG
GAAATGGTACTGCTCCGAAACATGCACGGAAGGGGCGTGTCCCGCGGAGA
GCACGTGCGAGACTCGCAAGAGGAAGTGGTGCCGCAGCAGCACCTACAGC
GGCTGCCCCGAGAAGCGGTCTTGCAAATAA
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