prot_S-dermatodea_contig12312.1458.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12312.1458.1
Unique Nameprot_S-dermatodea_contig12312.1458.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length467
Homology
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BLAST of mRNA_S-dermatodea_contig12312.1458.1 vs. uniprot
Match: A0A6H5LDX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX5_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.870e-19
Identity = 174/413 (42.13%), Postives = 210/413 (50.85%), Query Frame = 0 
Query:   13 QLGAAIAMNGDLGRAEVLHRQALSVMESTLSEEDPRLAEALFNLSAVVGAQAGRLQETEVLLTRCLESQKLLHGPDHPEVALVLDRLAEVIRARDAASIRAAAGEGKGNGNNSGGNNDYADCHPS----------------------------DAMTASRRNGMA-LSWWRGSSLTSRG-SSWFESAPSVTRSLGSARGVAGGDXXXXXXXXXVGVGSSRXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRGIGKGGAIPEDEGAKAKSEPDS-SEPASALPLPLATAGAVKVRDDGMRGGIRIGMR--SGRGGAXXXXXXXXXXXXXXXSSFFDTYSKGNAKRRWGMRSNASRCS----SSFSGGSFLGSRAGDTEGNRTPVSRANSRRSG 388
            +L AA+AM GDL  AE+LHR+ALS ME        R+AE LFNLSAVVGAQ GRL ETE +L                       +L ++IRARDA SI  +             NN ++                                 + +TASRRNGM+  SWW   S+TS G SS F S P+   S G     A G XXX       G         XXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX L GIGK GAIPE++  +  SE     +P     +          +DDGM+GGIRIG R  S                    +SFF+ YSKGN++ R G  S++S CS    +  SGG+  G++ G +     PV R NSRR+G
Sbjct: 1037 KLAAAVAMTGDLTGAEILHREALSSMEXXXXXXXXRIAEVLFNLSAVVGAQRGRLGETENILRXXXXXXXXXXXXXXXXXXXXXGKLHDIIRARDAVSICHS-------------NNSHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNPLTASRRNGMSPSSWWEFDSVTSAGGSSLFGSVPN---SRGRNGFFASGXXXXGRGPKSRG----SPHGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAGIGKDGAIPEEDIGRVSSEAGGPQQPPGGEGVDSXXXXXXXRKDDGMQGGIRIGARFASAPSMRRRRSSGGSAYRRGHLASFFEMYSKGNSRHRRGDSSSSSICSFDSPAEDSGGANRGNKKGIS-----PV-RRNSRRAG 1423
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BLAST of mRNA_S-dermatodea_contig12312.1458.1 vs. uniprot
Match: D8LQY7_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY7_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 2.000e-17
Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 0 
Query:   13 QLGAAIAMNGDLGRAEVLHRQALSVMESTLSEEDPRLAEALFNLSAVVGAQAGRLQETEVLLTRCLESQKLLHGPDHPEVALVLDRLAEVIR 104
            +L AA+AM GDL  AE+LHR+                   LFNLSAVVGAQ GRL ETE +L RCLE+Q+ LHGPDHPEV LVL +L ++IR
Sbjct:  695 KLAAAVAMTGDLTGAEILHREXXXXXXXXXXXXXXXXXXVLFNLSAVVGAQRGRLGETENILRRCLEAQERLHGPDHPEVDLVLGKLHDIIR 786
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12312.1458.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDX5_9PHAE2.870e-1942.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQY7_ECTSI2.000e-1755.43TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13374TPR_10coord: 55..91
e-value: 0.0051
score: 16.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 4..116
e-value: 1.3E-15
score: 59.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 10..105

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12312contigS-dermatodea_contig12312:2349..5524 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12312.1458.1mRNA_S-dermatodea_contig12312.1458.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12312 2349..5524 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12312.1458.1 ID=prot_S-dermatodea_contig12312.1458.1|Name=mRNA_S-dermatodea_contig12312.1458.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=467bp
PPPPPVPKSLHFQLGAAIAMNGDLGRAEVLHRQALSVMESTLSEEDPRLA
EALFNLSAVVGAQAGRLQETEVLLTRCLESQKLLHGPDHPEVALVLDRLA
EVIRARDAASIRAAAGEGKGNGNNSGGNNDYADCHPSDAMTASRRNGMAL
SWWRGSSLTSRGSSWFESAPSVTRSLGSARGVAGGDSVGGSLGGSVGVGS
SRGRGEGEGGGEGEGAGRPQGGQRAAGSADGVVGSGGVVGSGGGRCELGG
GCLRGIGKGGAIPEDEGAKAKSEPDSSEPASALPLPLATAGAVKVRDDGM
RGGIRIGMRSGRGGAAAAVGGGGERAAAAMSSFFDTYSKGNAKRRWGMRS
NASRCSSSFSGGSFLGSRAGDTEGNRTPVSRANSRRSGAIGGPSRRKRSS
RPVSRRSQSREVVAKRKGSSGAVSRSPARGAGGGSVSGNVGGGGGGEGGD
RGGVKKGKDADEPSPGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf