mRNA_S-dermatodea_contig12312.1458.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12312.1458.1 vs. uniprot
Match: A0A6H5LDX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX5_9PHAE) HSP 1 Score: 102 bits (254), Expect = 2.870e-19 Identity = 174/413 (42.13%), Postives = 210/413 (50.85%), Query Frame = 1
Query: 37 QLGAAIAMNGDLGRAEVLHRQALSVMESTLSEEDPRLAEALFNLSAVVGAQAGRLQETEVLLTRCLESQKLLHGPDHPEVALVLDRLAEVIRARDAASIRAAAGEGKGNGNNSGGNNDYADCHPS----------------------------DAMTASRRNGMA-LSWWRGSSLTSRG-SSWFESAPSVTRSLGSARGVAGGDXXXXXXXXXVGVGSSRXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRGIGKGGAIPEDEGAKAKSEPDS-SEPASALPLPLATAGAVKVRDDGMRGGIRIGMR--SGRGGAXXXXXXXXXXXXXXXSSFFDTYSKGNAKRRWGMRSNASRCS----SSFSGGSFLGSRAGDTEGNRTPVSRANSRRSG 1164
+L AA+AM GDL AE+LHR+ALS ME R+AE LFNLSAVVGAQ GRL ETE +L +L ++IRARDA SI + NN ++ + +TASRRNGM+ SWW S+TS G SS F S P+ S G A G XXX G XXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX L GIGK GAIPE++ + SE +P + +DDGM+GGIRIG R S +SFF+ YSKGN++ R G S++S CS + SGG+ G++ G + PV R NSRR+G
Sbjct: 1037 KLAAAVAMTGDLTGAEILHREALSSMEXXXXXXXXRIAEVLFNLSAVVGAQRGRLGETENILRXXXXXXXXXXXXXXXXXXXXXGKLHDIIRARDAVSICHS-------------NNSHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNPLTASRRNGMSPSSWWEFDSVTSAGGSSLFGSVPN---SRGRNGFFASGXXXXGRGPKSRG----SPHGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLAGIGKDGAIPEEDIGRVSSEAGGPQQPPGGEGVDSXXXXXXXRKDDGMQGGIRIGARFASAPSMRRRRSSGGSAYRRGHLASFFEMYSKGNSRHRRGDSSSSSICSFDSPAEDSGGANRGNKKGIS-----PV-RRNSRRAG 1423
BLAST of mRNA_S-dermatodea_contig12312.1458.1 vs. uniprot
Match: D8LQY7_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY7_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 2.000e-17 Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 1
Query: 37 QLGAAIAMNGDLGRAEVLHRQALSVMESTLSEEDPRLAEALFNLSAVVGAQAGRLQETEVLLTRCLESQKLLHGPDHPEVALVLDRLAEVIR 312
+L AA+AM GDL AE+LHR+ LFNLSAVVGAQ GRL ETE +L RCLE+Q+ LHGPDHPEV LVL +L ++IR
Sbjct: 695 KLAAAVAMTGDLTGAEILHREXXXXXXXXXXXXXXXXXXVLFNLSAVVGAQRGRLGETENILRRCLEAQERLHGPDHPEVDLVLGKLHDIIR 786 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12312.1458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12312.1458.1 >prot_S-dermatodea_contig12312.1458.1 ID=prot_S-dermatodea_contig12312.1458.1|Name=mRNA_S-dermatodea_contig12312.1458.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=467bp PPPPPVPKSLHFQLGAAIAMNGDLGRAEVLHRQALSVMESTLSEEDPRLAback to top mRNA from alignment at S-dermatodea_contig12312:2349..5524+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12312.1458.1 ID=mRNA_S-dermatodea_contig12312.1458.1|Name=mRNA_S-dermatodea_contig12312.1458.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3176bp|location=Sequence derived from alignment at S-dermatodea_contig12312:2349..5524+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12312:2349..5524+ >mRNA_S-dermatodea_contig12312.1458.1 ID=mRNA_S-dermatodea_contig12312.1458.1|Name=mRNA_S-dermatodea_contig12312.1458.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2802bp|location=Sequence derived from alignment at S-dermatodea_contig12312:2349..5524+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |