prot_S-dermatodea_contig12142.1334.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig12142.1334.1
Unique Name	prot_S-dermatodea_contig12142.1334.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	138

Homology

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BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A6H5L308_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L308_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 3.670e-63
Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 0

Query:    1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 104
            VSIEWDRKTLGEFFQ+KYDWDLLAARSIWAFGPE +GPNILVDDTLPSEVDKNRLNACR+SIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV
Sbjct:  702 VSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRDSIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 805

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BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A7S2V928_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V928_9STRA)

HSP 1 Score: 197 bits (501), Expect = 8.200e-60
Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 0

Query:    1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 104
            V I+WDRKTLGEFFQ+KYDWDLLAARSIWAFGP+  GPNILVDDTLPSEVDK  L+  RE+I+QGFQWGCREGPLCDEPIRN KFKILDAV+A+EPIHRGGGQV
Sbjct:   98 VRIDWDRKTLGEFFQSKYDWDLLAARSIWAFGPDAKGPNILVDDTLPSEVDKTLLSTIRETIIQGFQWGCREGPLCDEPIRNCKFKILDAVVASEPIHRGGGQV 201

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BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A7S2CQL7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQL7_9STRA)

HSP 1 Score: 195 bits (496), Expect = 3.210e-57
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 0

Query:    1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 104
            VSI+WDRK LGEFFQ+KYDWDLLAARS+WAFGP+I+GPNILVDDTLPSEVDK  L   +ES+VQGFQWGCREGPLCDEPIRN KFKILDA IA EPIHRGGGQ+
Sbjct:  288 VSIDWDRKQLGEFFQSKYDWDLLAARSVWAFGPDIDGPNILVDDTLPSEVDKKLLKQVQESVVQGFQWGCREGPLCDEPIRNTKFKILDATIAPEPIHRGGGQI 391

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BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A7S3XMC3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMC3_HETAK)

HSP 1 Score: 190 bits (483), Expect = 2.610e-56
Identity = 84/104 (80.77%), Postives = 93/104 (89.42%), Query Frame = 0

Query:    1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 104
            V I WDR+ LG FFQA+YDWDLLAARSIWAFGPE +GPN+LVDDTLPSEVDK  L + RES++QGFQWGCREGPLCDEP+RN KFKILDA IA+EPIHRGGGQV
Sbjct:  174 VQIGWDRRRLGRFFQARYDWDLLAARSIWAFGPEADGPNVLVDDTLPSEVDKTLLTSVRESVIQGFQWGCREGPLCDEPVRNCKFKILDASIASEPIHRGGGQV 277

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BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A6I9MIT2_9TELE (116 kDa U5 small nuclear ribonucleoprotein component n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9MIT2_9TELE)

HSP 1 Score: 185 bits (470), Expect = 4.940e-56
Identity = 85/104 (81.73%), Postives = 91/104 (87.50%), Query Frame = 0

Query:    1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 104
            V I W+RK LGEFFQ KYDWDLLAARSIWAFGP+  GPNILVDDTLPSEVDK  L + ++SIVQGFQWG REGPLCDEPIRN KFKILDAVIA EP+HRGGGQV
Sbjct:   85 VQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEPIRNVKFKILDAVIAQEPLHRGGGQV 188

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BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A1V4JR11_PATFA (EFG_IV domain-containing protein n=1 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4JR11_PATFA)

HSP 1 Score: 182 bits (462), Expect = 9.290e-56
Identity = 83/104 (79.81%), Postives = 91/104 (87.50%), Query Frame = 0

Query:    1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 104
            V I W+RK LGEFFQ KYDWDLLAARSIWAFGP+  GPNILVDDTLPSEVDK+ L + ++SIVQGFQWG REGPLCDE IRN KFKILDAVIA EP+HRGGGQ+
Sbjct:   57 VQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQI 160

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BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A7R9DCR9_TIMPO (Hypothetical protein n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9DCR9_TIMPO)

HSP 1 Score: 186 bits (472), Expect = 1.590e-55
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 0

Query:    1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 104
            V I W++K LGEFFQ KYDWDLLAARSIWAFGP++ GPNILVDDTLPSEVDK  LN+ ++SIVQGFQWG REGPLC+EPIRN KFKILDAVIA EP+HRGGGQ+
Sbjct:  103 VQITWNKKRLGEFFQTKYDWDLLAARSIWAFGPDMTGPNILVDDTLPSEVDKGLLNSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQI 206

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BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: UPI001FA412BA (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001FA412BA)

HSP 1 Score: 186 bits (471), Expect = 2.430e-55
Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 0

Query:    1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 104
            V + WDRK LGEFFQ KYDWDLLAARSIWAFGP+  GPNILVDDTLPSEVDK+ L++ ++SIVQGFQWG REGPLC+EPIRN KFKILDAVIA EP+HRGGGQ+
Sbjct:   98 VCVTWDRKRLGEFFQTKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKHLLSSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQI 201

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BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: UPI000B459C58 (116 kDa U5 small nuclear ribonucleoprotein component-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B459C58)

HSP 1 Score: 183 bits (465), Expect = 2.510e-55
Identity = 84/104 (80.77%), Postives = 90/104 (86.54%), Query Frame = 0

Query:    1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 104
            V I W RK LGEFFQ KYDWDLLAARSIWAFGP+  GPNILVDDTLPSEV+K+ L A ++SIVQGFQW  REGPLCDEPIRN KFKILDAVIA EPIHRGGGQ+
Sbjct:   19 VQITWPRKRLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVEKSLLGAVKDSIVQGFQWATREGPLCDEPIRNVKFKILDAVIAQEPIHRGGGQI 122

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BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A4Y2N9G0_ARAVE (U5 small nuclear ribonucleoprotein component n=7 Tax=Bilateria TaxID=33213 RepID=A0A4Y2N9G0_ARAVE)

HSP 1 Score: 185 bits (470), Expect = 3.430e-55
Identity = 84/104 (80.77%), Postives = 91/104 (87.50%), Query Frame = 0

Query:    1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 104
            V I W+RK LGEFFQ KYDWDLLAARSIWAFGP+  GPNILVDDTLPSEVDKN L+  ++SIVQGFQW  REGPLC+EPIRN KFKILDAVIA EPIHRGGGQ+
Sbjct:   95 VQINWNRKRLGEFFQTKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKNLLSMVKDSIVQGFQWATREGPLCEEPIRNVKFKILDAVIAGEPIHRGGGQI 198

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L308_9PHAE	3.670e-63	96.15	Tr-type G domain-containing protein n=2 Tax=Ectoca...	[more]
A0A7S2V928_9STRA	8.200e-60	84.62	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S2CQL7_9STRA	3.210e-57	83.65	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S3XMC3_HETAK	2.610e-56	80.77	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]
A0A6I9MIT2_9TELE	4.940e-56	81.73	116 kDa U5 small nuclear ribonucleoprotein compone...	[more]
A0A1V4JR11_PATFA	9.290e-56	79.81	EFG_IV domain-containing protein n=1 Tax=Patagioen...	[more]
A0A7R9DCR9_TIMPO	1.590e-55	79.81	Hypothetical protein n=1 Tax=Timema poppense TaxID...	[more]
UPI001FA412BA	2.430e-55	79.81	Uncharacterized protein n=1 Tax=Spodoptera exigua ...	[more]
UPI000B459C58	2.510e-55	80.77	116 kDa U5 small nuclear ribonucleoprotein compone...	[more]
A0A4Y2N9G0_ARAVE	3.430e-55	80.77	U5 small nuclear ribonucleoprotein component n=7 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005517	Translation elongation factor EFG/EF2, domain IV	SMART	SM00889	EFG_IV_2	coord: 1..120 e-value: 3.7E-6 score: 36.5
IPR005517	Translation elongation factor EFG/EF2, domain IV	PFAM	PF03764	EFG_IV	coord: 3..108 e-value: 4.1E-20 score: 71.8
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 1..122 e-value: 2.9E-41 score: 142.6
None	No IPR available	PANTHER	PTHR42908:SF6	116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENT	coord: 1..104
None	No IPR available	PANTHER	PTHR42908	FAMILY NOT NAMED	coord: 1..104
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 129..138
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 106..128
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..105
None	No IPR available	TMHMM	TMhelix		coord: 106..128
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 2..106

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig12142	contig	S-dermatodea_contig12142:886..2029 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig12142.1334.1	mRNA_S-dermatodea_contig12142.1334.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig12142 886..2029 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig12142.1334.1 ID=prot_S-dermatodea_contig12142.1334.1|Name=mRNA_S-dermatodea_contig12142.1334.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=138bp
VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEV
DKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRG
GGQVRFVVVVVVVVVVVAAAIAAATAQIGSVRYYKKIQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005517	Transl_elong_EFG/EF2_IV
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR020568	Ribosomal_S5_D2-typ_fold