mRNA_S-dermatodea_contig12142.1334.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A6H5L308_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L308_9PHAE) HSP 1 Score: 217 bits (552), Expect = 3.670e-63 Identity = 100/104 (96.15%), Postives = 103/104 (99.04%), Query Frame = 1
Query: 1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 312
VSIEWDRKTLGEFFQ+KYDWDLLAARSIWAFGPE +GPNILVDDTLPSEVDKNRLNACR+SIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV
Sbjct: 702 VSIEWDRKTLGEFFQSKYDWDLLAARSIWAFGPENDGPNILVDDTLPSEVDKNRLNACRDSIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 805
BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A7S2V928_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V928_9STRA) HSP 1 Score: 197 bits (501), Expect = 8.200e-60 Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 1
Query: 1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 312
V I+WDRKTLGEFFQ+KYDWDLLAARSIWAFGP+ GPNILVDDTLPSEVDK L+ RE+I+QGFQWGCREGPLCDEPIRN KFKILDAV+A+EPIHRGGGQV
Sbjct: 98 VRIDWDRKTLGEFFQSKYDWDLLAARSIWAFGPDAKGPNILVDDTLPSEVDKTLLSTIRETIIQGFQWGCREGPLCDEPIRNCKFKILDAVVASEPIHRGGGQV 201
BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A7S2CQL7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CQL7_9STRA) HSP 1 Score: 195 bits (496), Expect = 3.210e-57 Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 1
Query: 1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 312
VSI+WDRK LGEFFQ+KYDWDLLAARS+WAFGP+I+GPNILVDDTLPSEVDK L +ES+VQGFQWGCREGPLCDEPIRN KFKILDA IA EPIHRGGGQ+
Sbjct: 288 VSIDWDRKQLGEFFQSKYDWDLLAARSVWAFGPDIDGPNILVDDTLPSEVDKKLLKQVQESVVQGFQWGCREGPLCDEPIRNTKFKILDATIAPEPIHRGGGQI 391
BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A7S3XMC3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMC3_HETAK) HSP 1 Score: 190 bits (483), Expect = 2.610e-56 Identity = 84/104 (80.77%), Postives = 93/104 (89.42%), Query Frame = 1
Query: 1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 312
V I WDR+ LG FFQA+YDWDLLAARSIWAFGPE +GPN+LVDDTLPSEVDK L + RES++QGFQWGCREGPLCDEP+RN KFKILDA IA+EPIHRGGGQV
Sbjct: 174 VQIGWDRRRLGRFFQARYDWDLLAARSIWAFGPEADGPNVLVDDTLPSEVDKTLLTSVRESVIQGFQWGCREGPLCDEPVRNCKFKILDASIASEPIHRGGGQV 277
BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A6I9MIT2_9TELE (116 kDa U5 small nuclear ribonucleoprotein component n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9MIT2_9TELE) HSP 1 Score: 185 bits (470), Expect = 4.940e-56 Identity = 85/104 (81.73%), Postives = 91/104 (87.50%), Query Frame = 1
Query: 1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 312
V I W+RK LGEFFQ KYDWDLLAARSIWAFGP+ GPNILVDDTLPSEVDK L + ++SIVQGFQWG REGPLCDEPIRN KFKILDAVIA EP+HRGGGQV
Sbjct: 85 VQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDEPIRNVKFKILDAVIAQEPLHRGGGQV 188
BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A1V4JR11_PATFA (EFG_IV domain-containing protein n=1 Tax=Patagioenas fasciata monilis TaxID=372326 RepID=A0A1V4JR11_PATFA) HSP 1 Score: 182 bits (462), Expect = 9.290e-56 Identity = 83/104 (79.81%), Postives = 91/104 (87.50%), Query Frame = 1
Query: 1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 312
V I W+RK LGEFFQ KYDWDLLAARSIWAFGP+ GPNILVDDTLPSEVDK+ L + ++SIVQGFQWG REGPLCDE IRN KFKILDAVIA EP+HRGGGQ+
Sbjct: 57 VQITWNRKKLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQI 160
BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A7R9DCR9_TIMPO (Hypothetical protein n=1 Tax=Timema poppense TaxID=170557 RepID=A0A7R9DCR9_TIMPO) HSP 1 Score: 186 bits (472), Expect = 1.590e-55 Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 1
Query: 1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 312
V I W++K LGEFFQ KYDWDLLAARSIWAFGP++ GPNILVDDTLPSEVDK LN+ ++SIVQGFQWG REGPLC+EPIRN KFKILDAVIA EP+HRGGGQ+
Sbjct: 103 VQITWNKKRLGEFFQTKYDWDLLAARSIWAFGPDMTGPNILVDDTLPSEVDKGLLNSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQI 206
BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: UPI001FA412BA (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001FA412BA) HSP 1 Score: 186 bits (471), Expect = 2.430e-55 Identity = 83/104 (79.81%), Postives = 93/104 (89.42%), Query Frame = 1
Query: 1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 312
V + WDRK LGEFFQ KYDWDLLAARSIWAFGP+ GPNILVDDTLPSEVDK+ L++ ++SIVQGFQWG REGPLC+EPIRN KFKILDAVIA EP+HRGGGQ+
Sbjct: 98 VCVTWDRKRLGEFFQTKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKHLLSSVKDSIVQGFQWGTREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQI 201
BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: UPI000B459C58 (116 kDa U5 small nuclear ribonucleoprotein component-like n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=UPI000B459C58) HSP 1 Score: 183 bits (465), Expect = 2.510e-55 Identity = 84/104 (80.77%), Postives = 90/104 (86.54%), Query Frame = 1
Query: 1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 312
V I W RK LGEFFQ KYDWDLLAARSIWAFGP+ GPNILVDDTLPSEV+K+ L A ++SIVQGFQW REGPLCDEPIRN KFKILDAVIA EPIHRGGGQ+
Sbjct: 19 VQITWPRKRLGEFFQTKYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVEKSLLGAVKDSIVQGFQWATREGPLCDEPIRNVKFKILDAVIAQEPIHRGGGQI 122
BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Match: A0A4Y2N9G0_ARAVE (U5 small nuclear ribonucleoprotein component n=7 Tax=Bilateria TaxID=33213 RepID=A0A4Y2N9G0_ARAVE) HSP 1 Score: 185 bits (470), Expect = 3.430e-55 Identity = 84/104 (80.77%), Postives = 91/104 (87.50%), Query Frame = 1
Query: 1 VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVDKNRLNACRESIVQGFQWGCREGPLCDEPIRNAKFKILDAVIAAEPIHRGGGQV 312
V I W+RK LGEFFQ KYDWDLLAARSIWAFGP+ GPNILVDDTLPSEVDKN L+ ++SIVQGFQW REGPLC+EPIRN KFKILDAVIA EPIHRGGGQ+
Sbjct: 95 VQINWNRKRLGEFFQTKYDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKNLLSMVKDSIVQGFQWATREGPLCEEPIRNVKFKILDAVIAGEPIHRGGGQI 198 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12142.1334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12142.1334.1 >prot_S-dermatodea_contig12142.1334.1 ID=prot_S-dermatodea_contig12142.1334.1|Name=mRNA_S-dermatodea_contig12142.1334.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=138bp VSIEWDRKTLGEFFQAKYDWDLLAARSIWAFGPEINGPNILVDDTLPSEVback to top mRNA from alignment at S-dermatodea_contig12142:886..2029- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12142.1334.1 ID=mRNA_S-dermatodea_contig12142.1334.1|Name=mRNA_S-dermatodea_contig12142.1334.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1144bp|location=Sequence derived from alignment at S-dermatodea_contig12142:886..2029- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12142:886..2029- >mRNA_S-dermatodea_contig12142.1334.1 ID=mRNA_S-dermatodea_contig12142.1334.1|Name=mRNA_S-dermatodea_contig12142.1334.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at S-dermatodea_contig12142:886..2029- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |