prot_S-dermatodea_contig12131.1328.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig12131.1328.1
Unique Nameprot_S-dermatodea_contig12131.1328.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length125
Homology
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: D7FZR4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR4_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 2.440e-55
Identity = 94/108 (87.04%), Postives = 101/108 (93.52%), Query Frame = 0
Query:    1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 108
            GNRLEAEGT+AL+PGLARNR+LVYLSLADNGIGSGDAD  ALEDFRDAMMSCSTLTH+DLLYNRIGERGARVMLPAL     ++IKHFLVDATLPTPLFEALHRRD+G
Sbjct:  222 GNRLEAEGTKALSPGLARNRSLVYLSLADNGIGSGDADVDALEDFRDAMMSCSTLTHVDLLYNRIGERGARVMLPAL---EQNRIKHFLVDATLPTPLFEALHRRDSG 326          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A835YWH7_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWH7_9STRA)

HSP 1 Score: 143 bits (360), Expect = 4.370e-39
Identity = 74/108 (68.52%), Postives = 86/108 (79.63%), Query Frame = 0
Query:    1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 108
            GNRL  EG R LAPGLARN ++ YLSLADN IG    D  AL  FRDA+++C+TL+H+DLLYNRIG  GA  +LPALAP+NA QI+ FLVDATLPTPLF+ALHRRD G
Sbjct:  221 GNRLGGEGLRDLAPGLARNGSVTYLSLADNAIGGVARDVEALALFRDAILACTTLSHVDLLYNRIGPDGATTLLPALAPDNA-QIRQFLVDATLPTPLFDALHRRDAG 327          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A7S3Y2E7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2E7_HETAK)

HSP 1 Score: 113 bits (282), Expect = 6.080e-30
Identity = 60/100 (60.00%), Postives = 68/100 (68.00%), Query Frame = 0
Query:    8 GTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDT 107
            G   L PGLARNR L YL LADNGIG  + D+  L  F  +M+SC TLTH+DLLYNRIGE GA  + P L PEN  +IK FLVDA LP  LF  + RRDT
Sbjct:    4 GLGGLCPGLARNRGLQYLGLADNGIGELEGDDAHLRAFGASMLSCETLTHVDLLYNRIGEMGAAALQPFLLPENT-RIKQFLVDANLPEGLFGTVFRRDT 102          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A7S2G5E5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G5E5_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.520e-20
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 0
Query:    1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCST-LTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 108
            GN++  +G   L PGL ++++LV L L+DN IG  D +  AL  F  A+M  S  L +I LLYNRIGE GA  +LPAL P N  +I+ FLVD TLP PLFEAL R   G
Sbjct:  260 GNQIRGQGLLELCPGLEKSKSLVDLDLSDNDIGEQDIE--ALNAFAVALMMPSVALANISLLYNRIGEAGANALLPALDPSNK-RIQQFLVDETLPPPLFEALSRVSAG 365          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A7S3HG08_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HG08_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.170e-17
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 0
Query:    1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCS-TLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 108
            GNRL  +G  +L  GL  N     + LADN I   + D I L   ++ +++ +  LT +DL+YNRIGE GA++++ A+ PEN  +IK FLVD TLP P+FE L R+  G
Sbjct:  224 GNRLGGQGLASLCVGLMHNTKCETICLADNMIDQMEDDIIGLTALKECLLNPTLALTSVDLMYNRIGEAGAKILIEAVNPENT-KIKEFLVDLTLPMPIFEQLFRKGGG 331          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A0P1B280_PLAHL (LRR-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B280_PLAHL)

HSP 1 Score: 85.1 bits (209), Expect = 4.310e-17
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 0
Query:    1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHR 104
            GN +   G   L+ GL R + LV L+L+DNGI +      AL  FRDA++ C +L H+D  +N I   GA ++LPALAPEN  Q++ FLVDA+LP  LF  L+R
Sbjct:  231 GNNIGNSGLHHLSLGLGRAQRLVKLNLSDNGIRNNIE---ALSAFRDALIRCKSLAHVDFTFNLIEPEGASILLPALAPENT-QLQSFLVDASLPKNLFLQLNR 330          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A482S5Z2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5Z2_9ARCH)

HSP 1 Score: 79.7 bits (195), Expect = 2.780e-15
Identity = 52/110 (47.27%), Postives = 64/110 (58.18%), Query Frame = 0
Query:    1 GNRLEAEGTRALAP-GLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMM-SCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 108
            GNRL  +G   L   GL  N     L+L+DN I   + D   L   RD +M S S LT +DL+YNRIGERG  V++ AL  E   +IK FLVD TLP PLFE L ++  G
Sbjct:  184 GNRLTGQGVYVLCTKGLVVNTKCETLNLSDNLIDQLEEDLAGLTALRDCLMTSTSGLTSVDLMYNRIGERGGLVLVEALESEGC-KIKEFLVDLTLPMPLFEKLFKKAGG 292          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A8J2X6V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X6V8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.500e-12
Identity = 46/116 (39.66%), Postives = 58/116 (50.00%), Query Frame = 0
Query:    1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMM-SCSTLTHIDLLYNRIGERGARVMLPALAPENAH-------QIKHFLVDATLPTPLFEALHRRDTG 108
            GN++   G   +  G+  N  L YLSLADN I + D D  ALE     M    S L+ +DLL+NRIGE+GA  ML A              +I+   VD +LP  LF  L R D G
Sbjct:  223 GNKMRGGGLSGILSGMDNNNKLEYLSLADNAIAATDEDLEALEQLAGVMQRETSLLSQVDLLHNRIGEKGANTMLAAFNGGELEGSKGPPGKIQMLQVDHSLPDQLFNTLGRLDAG 338          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FZR4_ECTSI2.440e-5587.04Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YWH7_9STRA4.370e-3968.52Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A7S3Y2E7_HETAK6.080e-3060.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G5E5_9STRA5.520e-2051.38Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3HG08_9STRA2.170e-1744.04Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0P1B280_PLAHL4.310e-1747.12LRR-containing protein n=1 Tax=Plasmopara halstedi... [more]
A0A482S5Z2_9ARCH2.780e-1547.27Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J2X6V8_9STRA6.500e-1239.66Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 19..41
e-value: 0.019
score: 15.0
coord: 51..70
e-value: 0.38
score: 10.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..92
e-value: 1.4E-14
score: 55.5
NoneNo IPR availablePANTHERPTHR24114FAMILY NOT NAMEDcoord: 1..86
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 2..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12131contigS-dermatodea_contig12131:5894..7138 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12131.1328.1mRNA_S-dermatodea_contig12131.1328.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig12131 5894..7138 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig12131.1328.1 ID=prot_S-dermatodea_contig12131.1328.1|Name=mRNA_S-dermatodea_contig12131.1328.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMM
SCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFE
ALHRRDTGGGGKKKKGGKKGKKKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf