mRNA_S-dermatodea_contig12131.1328.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: D7FZR4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR4_ECTSI) HSP 1 Score: 184 bits (468), Expect = 2.440e-55 Identity = 94/108 (87.04%), Postives = 101/108 (93.52%), Query Frame = 1
Query: 1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 324
GNRLEAEGT+AL+PGLARNR+LVYLSLADNGIGSGDAD ALEDFRDAMMSCSTLTH+DLLYNRIGERGARVMLPAL ++IKHFLVDATLPTPLFEALHRRD+G
Sbjct: 222 GNRLEAEGTKALSPGLARNRSLVYLSLADNGIGSGDADVDALEDFRDAMMSCSTLTHVDLLYNRIGERGARVMLPAL---EQNRIKHFLVDATLPTPLFEALHRRDSG 326
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A835YWH7_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWH7_9STRA) HSP 1 Score: 143 bits (360), Expect = 4.370e-39 Identity = 74/108 (68.52%), Postives = 86/108 (79.63%), Query Frame = 1
Query: 1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 324
GNRL EG R LAPGLARN ++ YLSLADN IG D AL FRDA+++C+TL+H+DLLYNRIG GA +LPALAP+NA QI+ FLVDATLPTPLF+ALHRRD G
Sbjct: 221 GNRLGGEGLRDLAPGLARNGSVTYLSLADNAIGGVARDVEALALFRDAILACTTLSHVDLLYNRIGPDGATTLLPALAPDNA-QIRQFLVDATLPTPLFDALHRRDAG 327
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A7S3Y2E7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2E7_HETAK) HSP 1 Score: 113 bits (282), Expect = 6.080e-30 Identity = 60/100 (60.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query: 22 GTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDT 321
G L PGLARNR L YL LADNGIG + D+ L F +M+SC TLTH+DLLYNRIGE GA + P L PEN +IK FLVDA LP LF + RRDT
Sbjct: 4 GLGGLCPGLARNRGLQYLGLADNGIGELEGDDAHLRAFGASMLSCETLTHVDLLYNRIGEMGAAALQPFLLPENT-RIKQFLVDANLPEGLFGTVFRRDT 102
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A7S2G5E5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G5E5_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 5.520e-20 Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 1
Query: 1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCST-LTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 324
GN++ +G L PGL ++++LV L L+DN IG D + AL F A+M S L +I LLYNRIGE GA +LPAL P N +I+ FLVD TLP PLFEAL R G
Sbjct: 260 GNQIRGQGLLELCPGLEKSKSLVDLDLSDNDIGEQDIE--ALNAFAVALMMPSVALANISLLYNRIGEAGANALLPALDPSNK-RIQQFLVDETLPPPLFEALSRVSAG 365
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A7S3HG08_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HG08_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 2.170e-17 Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 1
Query: 1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCS-TLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 324
GNRL +G +L GL N + LADN I + D I L ++ +++ + LT +DL+YNRIGE GA++++ A+ PEN +IK FLVD TLP P+FE L R+ G
Sbjct: 224 GNRLGGQGLASLCVGLMHNTKCETICLADNMIDQMEDDIIGLTALKECLLNPTLALTSVDLMYNRIGEAGAKILIEAVNPENT-KIKEFLVDLTLPMPIFEQLFRKGGG 331
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A0P1B280_PLAHL (LRR-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B280_PLAHL) HSP 1 Score: 85.1 bits (209), Expect = 4.310e-17 Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHR 312
GN + G L+ GL R + LV L+L+DNGI + AL FRDA++ C +L H+D +N I GA ++LPALAPEN Q++ FLVDA+LP LF L+R
Sbjct: 231 GNNIGNSGLHHLSLGLGRAQRLVKLNLSDNGIRNNIE---ALSAFRDALIRCKSLAHVDFTFNLIEPEGASILLPALAPENT-QLQSFLVDASLPKNLFLQLNR 330
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A482S5Z2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5Z2_9ARCH) HSP 1 Score: 79.7 bits (195), Expect = 2.780e-15 Identity = 52/110 (47.27%), Postives = 64/110 (58.18%), Query Frame = 1
Query: 1 GNRLEAEGTRALAP-GLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMM-SCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 324
GNRL +G L GL N L+L+DN I + D L RD +M S S LT +DL+YNRIGERG V++ AL E +IK FLVD TLP PLFE L ++ G
Sbjct: 184 GNRLTGQGVYVLCTKGLVVNTKCETLNLSDNLIDQLEEDLAGLTALRDCLMTSTSGLTSVDLMYNRIGERGGLVLVEALESEGC-KIKEFLVDLTLPMPLFEKLFKKAGG 292
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A8J2X6V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X6V8_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 6.500e-12 Identity = 46/116 (39.66%), Postives = 58/116 (50.00%), Query Frame = 1
Query: 1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMM-SCSTLTHIDLLYNRIGERGARVMLPALAPENAH-------QIKHFLVDATLPTPLFEALHRRDTG 324
GN++ G + G+ N L YLSLADN I + D D ALE M S L+ +DLL+NRIGE+GA ML A +I+ VD +LP LF L R D G
Sbjct: 223 GNKMRGGGLSGILSGMDNNNKLEYLSLADNAIAATDEDLEALEQLAGVMQRETSLLSQVDLLHNRIGEKGANTMLAAFNGGELEGSKGPPGKIQMLQVDHSLPDQLFNTLGRLDAG 338
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A6H5KP33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP33_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 9.610e-11 Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = -2
Query: 3 IASRKSSRAISSASPEPMPLSANDKYTRVRLRARPGASALVPSASRRF 146
+ASRKSSRA +SASP+PMPLSA+D+YT RLRA PG ALVPSAS R
Sbjct: 1 MASRKSSRASTSASPDPMPLSASDRYTSDRLRASPGDRALVPSASSRL 48 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12131.1328.1 >prot_S-dermatodea_contig12131.1328.1 ID=prot_S-dermatodea_contig12131.1328.1|Name=mRNA_S-dermatodea_contig12131.1328.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMback to top mRNA from alignment at S-dermatodea_contig12131:5894..7138- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12131.1328.1 ID=mRNA_S-dermatodea_contig12131.1328.1|Name=mRNA_S-dermatodea_contig12131.1328.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1245bp|location=Sequence derived from alignment at S-dermatodea_contig12131:5894..7138- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12131:5894..7138- >mRNA_S-dermatodea_contig12131.1328.1 ID=mRNA_S-dermatodea_contig12131.1328.1|Name=mRNA_S-dermatodea_contig12131.1328.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig12131:5894..7138- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |