mRNA_S-dermatodea_contig12131.1328.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12131.1328.1
Unique NamemRNA_S-dermatodea_contig12131.1328.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: D7FZR4_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR4_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 2.440e-55
Identity = 94/108 (87.04%), Postives = 101/108 (93.52%), Query Frame = 1
Query:    1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 324
            GNRLEAEGT+AL+PGLARNR+LVYLSLADNGIGSGDAD  ALEDFRDAMMSCSTLTH+DLLYNRIGERGARVMLPAL     ++IKHFLVDATLPTPLFEALHRRD+G
Sbjct:  222 GNRLEAEGTKALSPGLARNRSLVYLSLADNGIGSGDADVDALEDFRDAMMSCSTLTHVDLLYNRIGERGARVMLPAL---EQNRIKHFLVDATLPTPLFEALHRRDSG 326          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A835YWH7_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWH7_9STRA)

HSP 1 Score: 143 bits (360), Expect = 4.370e-39
Identity = 74/108 (68.52%), Postives = 86/108 (79.63%), Query Frame = 1
Query:    1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 324
            GNRL  EG R LAPGLARN ++ YLSLADN IG    D  AL  FRDA+++C+TL+H+DLLYNRIG  GA  +LPALAP+NA QI+ FLVDATLPTPLF+ALHRRD G
Sbjct:  221 GNRLGGEGLRDLAPGLARNGSVTYLSLADNAIGGVARDVEALALFRDAILACTTLSHVDLLYNRIGPDGATTLLPALAPDNA-QIRQFLVDATLPTPLFDALHRRDAG 327          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A7S3Y2E7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2E7_HETAK)

HSP 1 Score: 113 bits (282), Expect = 6.080e-30
Identity = 60/100 (60.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   22 GTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDT 321
            G   L PGLARNR L YL LADNGIG  + D+  L  F  +M+SC TLTH+DLLYNRIGE GA  + P L PEN  +IK FLVDA LP  LF  + RRDT
Sbjct:    4 GLGGLCPGLARNRGLQYLGLADNGIGELEGDDAHLRAFGASMLSCETLTHVDLLYNRIGEMGAAALQPFLLPENT-RIKQFLVDANLPEGLFGTVFRRDT 102          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A7S2G5E5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G5E5_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 5.520e-20
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCST-LTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 324
            GN++  +G   L PGL ++++LV L L+DN IG  D +  AL  F  A+M  S  L +I LLYNRIGE GA  +LPAL P N  +I+ FLVD TLP PLFEAL R   G
Sbjct:  260 GNQIRGQGLLELCPGLEKSKSLVDLDLSDNDIGEQDIE--ALNAFAVALMMPSVALANISLLYNRIGEAGANALLPALDPSNK-RIQQFLVDETLPPPLFEALSRVSAG 365          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A7S3HG08_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HG08_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.170e-17
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 1
Query:    1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCS-TLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 324
            GNRL  +G  +L  GL  N     + LADN I   + D I L   ++ +++ +  LT +DL+YNRIGE GA++++ A+ PEN  +IK FLVD TLP P+FE L R+  G
Sbjct:  224 GNRLGGQGLASLCVGLMHNTKCETICLADNMIDQMEDDIIGLTALKECLLNPTLALTSVDLMYNRIGEAGAKILIEAVNPENT-KIKEFLVDLTLPMPIFEQLFRKGGG 331          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A0P1B280_PLAHL (LRR-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B280_PLAHL)

HSP 1 Score: 85.1 bits (209), Expect = 4.310e-17
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMMSCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHR 312
            GN +   G   L+ GL R + LV L+L+DNGI +      AL  FRDA++ C +L H+D  +N I   GA ++LPALAPEN  Q++ FLVDA+LP  LF  L+R
Sbjct:  231 GNNIGNSGLHHLSLGLGRAQRLVKLNLSDNGIRNNIE---ALSAFRDALIRCKSLAHVDFTFNLIEPEGASILLPALAPENT-QLQSFLVDASLPKNLFLQLNR 330          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A482S5Z2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S5Z2_9ARCH)

HSP 1 Score: 79.7 bits (195), Expect = 2.780e-15
Identity = 52/110 (47.27%), Postives = 64/110 (58.18%), Query Frame = 1
Query:    1 GNRLEAEGTRALAP-GLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMM-SCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFEALHRRDTG 324
            GNRL  +G   L   GL  N     L+L+DN I   + D   L   RD +M S S LT +DL+YNRIGERG  V++ AL  E   +IK FLVD TLP PLFE L ++  G
Sbjct:  184 GNRLTGQGVYVLCTKGLVVNTKCETLNLSDNLIDQLEEDLAGLTALRDCLMTSTSGLTSVDLMYNRIGERGGLVLVEALESEGC-KIKEFLVDLTLPMPLFEKLFKKAGG 292          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A8J2X6V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X6V8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.500e-12
Identity = 46/116 (39.66%), Postives = 58/116 (50.00%), Query Frame = 1
Query:    1 GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMM-SCSTLTHIDLLYNRIGERGARVMLPALAPENAH-------QIKHFLVDATLPTPLFEALHRRDTG 324
            GN++   G   +  G+  N  L YLSLADN I + D D  ALE     M    S L+ +DLL+NRIGE+GA  ML A              +I+   VD +LP  LF  L R D G
Sbjct:  223 GNKMRGGGLSGILSGMDNNNKLEYLSLADNAIAATDEDLEALEQLAGVMQRETSLLSQVDLLHNRIGEKGANTMLAAFNGGELEGSKGPPGKIQMLQVDHSLPDQLFNTLGRLDAG 338          
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Match: A0A6H5KP33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP33_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 9.610e-11
Identity = 35/48 (72.92%), Postives = 40/48 (83.33%), Query Frame = -2
Query:    3 IASRKSSRAISSASPEPMPLSANDKYTRVRLRARPGASALVPSASRRF 146
            +ASRKSSRA +SASP+PMPLSA+D+YT  RLRA PG  ALVPSAS R 
Sbjct:    1 MASRKSSRASTSASPDPMPLSASDRYTSDRLRASPGDRALVPSASSRL 48          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12131.1328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FZR4_ECTSI2.440e-5587.04Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YWH7_9STRA4.370e-3968.52Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A7S3Y2E7_HETAK6.080e-3060.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G5E5_9STRA5.520e-2051.38Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3HG08_9STRA2.170e-1744.04Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A0P1B280_PLAHL4.310e-1747.12LRR-containing protein n=1 Tax=Plasmopara halstedi... [more]
A0A482S5Z2_9ARCH2.780e-1547.27Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A8J2X6V8_9STRA6.500e-1239.66Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6H5KP33_9PHAE9.610e-1172.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12131contigS-dermatodea_contig12131:5894..7138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue1e-44
Seed eggNOG ortholog2880.D7FZR4
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-21_004060.1
Exons2
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924232.7328494-CDS-S-dermatodea_contig12131:5893..60551622924232.7328494-CDS-S-dermatodea_contig12131:5893..6055Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12131 5894..6055 -
1694079112.1281445-CDS-S-dermatodea_contig12131:5893..60551694079112.1281445-CDS-S-dermatodea_contig12131:5893..6055Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12131 5894..6055 -
1622924232.7469923-CDS-S-dermatodea_contig12131:6925..71381622924232.7469923-CDS-S-dermatodea_contig12131:6925..7138Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12131 6926..7138 -
1694079112.1474934-CDS-S-dermatodea_contig12131:6925..71381694079112.1474934-CDS-S-dermatodea_contig12131:6925..7138Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12131 6926..7138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12131.1328.1prot_S-dermatodea_contig12131.1328.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12131 5894..7138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12131.1328.1

>prot_S-dermatodea_contig12131.1328.1 ID=prot_S-dermatodea_contig12131.1328.1|Name=mRNA_S-dermatodea_contig12131.1328.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
GNRLEAEGTRALAPGLARNRTLVYLSLADNGIGSGDADEIALEDFRDAMM
SCSTLTHIDLLYNRIGERGARVMLPALAPENAHQIKHFLVDATLPTPLFE
ALHRRDTGGGGKKKKGGKKGKKKK*
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mRNA from alignment at S-dermatodea_contig12131:5894..7138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12131.1328.1 ID=mRNA_S-dermatodea_contig12131.1328.1|Name=mRNA_S-dermatodea_contig12131.1328.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1245bp|location=Sequence derived from alignment at S-dermatodea_contig12131:5894..7138- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAAACCGCCTGGAGGCAGAGGGCACGAGGGCGCTAGCACCGGGCCTGGC CCGCAATCGCACTCTTGTATATTTATCGTTGGCCGATAATGGCATCGGCT CGGGAGATGCAGACGAAATCGCTCTTGAGGATTTCCGAGATGCAATGATG AGCTGTTCTACTCTGACGCACATCGACCTCCTCTACAACCGCATAGGGGA GAGGGGCGCACGGGTGAGAGGGAAATTGTGTACTATACGGGGCGCGCGCG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGG GGGGGCGGGGTGGGGGTGGTGGGGGGGGGTGGCTTGGGTTAAAGGGAGGA GTATGACGGGAGGCTCTGAAGTTTATCACCTCGGCAGCCGGGTGACGGAG ACCATGATATTTTACAAGTGTGGGAGAGGGTCGGGGGGGAGATGTGCTTC ACTCGCTTTCTACGTACGCGAACACGACATGCACAAATTTCGACTAGCTG CTAAAATCCTGCCATATACAGAAGTAATGATTTGAGGCAAACGTCGGAAG TAAGCGGGCCGTGTAGGTGCCACTGTGAATCCTGGCGGCGTGCCCGTACA GGATCGGGGTATCGATGTGTTTAGAGGTGGGCATTCAATCTCGAAACGGG CAAATCCCTCAAGGCGCACGCTACTTTTCGTCTCCTGGCGTGTCATTAAT GCACAAAAACTAAACCTTCCGCATTTACACATTGCCGTTGGACGGTGTGG CACCTCGCAAGCTACTGTACGGGAATGCTGAGCTTATGAAAACTTTTCGT CTCTCACCGGGAACACGACGGCTGCTCAAGTAGATAACATTGCAGCGTCG CAAACTAACACACCTTTGCATGGTGCCCGCCTCACATCAAAGGAGCGCGG TACTAAGCGCCACAACGCTCGACAAGGCCAAAACTGACGAACGATTAAAC GTTCAGGTTTTTATCGGAACGAAGCTAGCCGTTGGCCCGCAAAAAGGTCC AGATGAAACGGACTCAACTAACGCGCTCTCTGCACCGCCCGGCGCGCCAA ACGTTACCCCACGCGACTCGACCATGTGAACAGGTGATGCTTCCGGCACT GGCACCGGAAAATGCGCACCAGATCAAGCATTTCTTGGTGGATGCAACGC TACCGACTCCGTTGTTCGAGGCTCTTCACCGACGGGACACGGGCGGGGGG GGGAAGAAGAAAAAAGGAGGGAAGAAGGGGAAAAAGAAAAAGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig12131:5894..7138-

>mRNA_S-dermatodea_contig12131.1328.1 ID=mRNA_S-dermatodea_contig12131.1328.1|Name=mRNA_S-dermatodea_contig12131.1328.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig12131:5894..7138- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGAAACCGCCTGGAGGCAGAGGGCACGAGGGCGCTAGCACCGGGCCTGGC
CCGCAATCGCACTCTTGTATATTTATCGTTGGCCGATAATGGCATCGGCT
CGGGAGATGCAGACGAAATCGCTCTTGAGGATTTCCGAGATGCAATGATG
AGCTGTTCTACTCTGACGCACATCGACCTCCTCTACAACCGCATAGGGGA
GAGGGGCGCACGGGGAAACCGCCTGGAGGCAGAGGGCACGAGGGCGCTAG
CACCGGGCCTGGCCCGCAATCGCACTCTTGTATATTTATCGTTGGCCGAT
AATGGCATCGGCTCGGGAGATGCAGACGAAATCGCTCTTGAGGATTTCCG
AGATGCAATGATGAGCTGTTCTACTCTGACGCACATCGACCTCCTCTACA
ACCGCATAGGGGAGAGGGGCGCACGGGTGATGCTTCCGGCACTGGCACCG
GAAAATGCGCACCAGATCAAGCATTTCTTGGTGGATGCAACGCTACCGAC
TCCGTTGTTCGAGGCTCTTCACCGACGGGACACGGGCGGGGGGGGGAAGA
AGAAAAAAGGAGGGAAGAAGGGGAAAAAGAAAAAGTAAGTGATGCTTCCG
GCACTGGCACCGGAAAATGCGCACCAGATCAAGCATTTCTTGGTGGATGC
AACGCTACCGACTCCGTTGTTCGAGGCTCTTCACCGACGGGACACGGGCG
GGGGGGGGAAGAAGAAAAAAGGAGGGAAGAAGGGGAAAAAGAAAAAGTAA
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