prot_S-dermatodea_contig1194.1214.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1194.1214.1
Unique Nameprot_S-dermatodea_contig1194.1214.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length1183
Homology
BLAST of mRNA_S-dermatodea_contig1194.1214.1 vs. uniprot
Match: A0A6H5KNP8_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP8_9PHAE)

HSP 1 Score: 898 bits (2320), Expect = 6.490e-305
Identity = 642/1273 (50.43%), Postives = 759/1273 (59.62%), Query Frame = 0
Query:    1 MSYAPVFQDARTPGMGSTNGAWGWASQSHVFGGVRAC-----VPAFPSADALSGAANSNDSDLEIQEGCFGVAA---QKRRLPSQNFEVMFSWLSSTQTSPS----PSWGAVASAASAAGAVAHP--KSLLEVALERRDGAPAAAFMTLASLSPKFSGKEAAYEVHQGTDAIALALRLYHARSTWRRVSRRSAQRRRGQGPGSRLHPDDPVLAAAVDEADSLERQQRASADYDAGMVLLNTGLAVSLLDAAGGGLKCGGGAGSAGSFGR-GDSGVGNDA---DPLAALVPREALMVAETRALTKALGI---SSIVAREHQSSSSGRGRSASWGGKTDSGRGRXXXXXXXXXXXXVDGKEEACQALEKWFSHPVDVAKRKARVGRAARQAADLIAAGDRKSSGGGGRDNAAGVGKASGDVLVLRLADDAREAIHRVHVAFFGAARHGPHDVPAVLAEDL-RLVLFGGACAGGESCHRYNPGCSDGAKGRVKETVPPRPTPRILSSVEAFAEYYRLVTLADAMDFAAEAGDSGLAYGSLHEASTALLPAGCPLCRQ-HRPHNCGDAVGAAMVGDNG--LPEQSPATPPQCDICELSARVVMRGVGLMEREKDYDNAFHYLDILLKASSQRLSVHRPRYWLRLVTDLNHKKRSIEALRACEQAFAEAD-GPP----------TVASCIGDATQLSPGPN-------------HRNGXXXXXXXXXXXXEAAAILPLGECLPLLRRAVRLAVPPLRWRKRPPPQLREARLRVMSLDLSWRRGGGGDFGGRSSSLIPRDLLAGPASASAAEDVEANRAEPDVMSGEEGNGGEEYERGAGGGDGADGM-------------GGEQTGSATIVPGTSLEQAVLNTMLAELGPEWTGLHAENRQDLFWGGGGICLGLYALLCWDALFAPLVPATAAD-AATATVAVDSSTVGRGVVAHASSSSPALSGNGGKTAKNGSAVSCGEGGVCEMSTPKGVIRAADAADDWASVSGALESSPKMD---GRPFSQGHEAFF------------------YHPFPSPYQSEPADLMTTVFAGRRRHLLEGVYASIEGRQASTLLRRNWARHCGKACTGLNWNLFPNGVEGWVTVASAIGPLPLSRVCRNLASNYWAWRHGLSDLFLWRKDAAVTSGAAAVESSPCPPFEESAPRVKPPDFTPAVVVVEGGPPGDTVVEAVVEGKIANGGASV---------PTREGRCMWVEVKGPGDSLSCAQEGWIDTLVGAGAEAVLLRVEDTAS 1180
            +SY PVFQD RTPGMGS++G WGWA QS VFGG RAC     VP    +D   G         E+ +     AA   + R L S+NF+ M +WLSS+  + +          A A  +  A A P  K+LLE+ALER+DG PA AFMTL SL+P+   +EA  E ++    +ALALRLYH  STWRR+SR    RR  QGPGSRLHPDDP LAAAVDEAD  ER++R+ A++   + LL+ GLAVSL DA           G+ GS GR G SG  +D    D LAAL  REAL  +ETR+L KAL +   SS + RE  SSS                   XXXXXXXXXX  V+GK+E C+ LE+W + P D AKR+ R+ RAARQAA+ +AAG  +  G GG          +  V+VLRL D+A+EAIHRVHVAFF AARHGP DV AVL E L   V+F GA A G   H    G S G  G+ ++    RP PR+LS VEAF EYY+LV+L+DAM+ AA AGD GLAYGSLHEASTALLP+GCPLCR+ H  H     V A  V   G  L   +   P  CDICELSARVVMRGVGLMER+KDYD+AFHYLDILL+ASSQRLSVHRPRYWLRLVTDL HKKRS+ AL+ACE+A AEA   PP          T+ +   +A Q +  P+                   XXXXXXXX  +AAAILPLGE LPLLRRA+RLAVPPLRWRKRPPP+L+EARLRVM LDLSWRR G  D  G +S    R+  + PA+A++ E                   G    RGAG G+                  G E  GS  I PGTSLEQAVLN MLAEL P W GLHAEN          ICLGL+ALLCWDALFAPLVPA+  + AAT    V  S   R  VA  S     ++    K  +NG      EGG  E   P    + +D     A+ SG   +  ++D   G   S G    F                  ++PFPSP+QSEPADLMT  FAGRRR LL  V+ SIE   A  ++R+ W+RH GKACTGLNWNLFP+GVEGW TVASAIGPLPLS +CRNLASNYWAWRHGL DL LWR++AA    A A  SS CP    S       D   +  V +  P G     ++   K  NGG  +         P R+ RC WVEVKGPGDSLSCAQE WID LVGAGA+  LLRVED A+
Sbjct:  145 LSYTPVFQDLRTPGMGSSSG-WGWAFQSQVFGGARACRASSSVPPRDRSDETDG--------NEVPDSVHATAAAGGRSRALQSRNFKAMVAWLSSSHAASAVXXXXXXXXAAGALRSPRAAADPADKTLLEIALERQDGGPATAFMTLMSLAPEALAEEAEAEANE---PLALALRLYHGASTWRRISRDPPPRR--QGPGSRLHPDDPGLAAAVDEADDCERRRRSGAEHAGALALLSAGLAVSLRDA-----------GAKGSGGRQGKSGQRDDLEDPDLLAALALREALTASETRSLAKALILGDTSSSLRREPGSSSXXXXX--------------XXXXXXXXXXAAVEGKDETCRELEEWLTRPEDAAKRRRRLSRAARQAAEDLAAGRTEGDGEGG----------ATAVVVLRLTDEAQEAIHRVHVAFFAAARHGPQDVLAVLREGLDEGVVFAGAAATGAGGHEAK-GSSRGVAGKGRK----RPAPRVLSCVEAFGEYYKLVSLSDAMELAAGAGDPGLAYGSLHEASTALLPSGCPLCRRNHLRHR---TVSADSVDGRGAALTRTTTTPPSHCDICELSARVVMRGVGLMERDKDYDSAFHYLDILLQASSQRLSVHRPRYWLRLVTDLGHKKRSMAALQACEKALAEASLSPPAESTAASPAVTMRTSAVEAAQGAEDPDCSLVNESPRVTSAEPAAPAXXXXXXXXAEQAAAILPLGESLPLLRRAIRLAVPPLRWRKRPPPKLKEARLRVMQLDLSWRRAG--DAVGSASMTPTRNPPSRPATAASEE-------------------GFPERRGAGEGEXXXXXXXXXXXXXXXXXSGCEGRGSVRIAPGTSLEQAVLNAMLAELEPGWKGLHAENS---------ICLGLFALLCWDALFAPLVPASPGEIAATPRTPVCRS---REPVADTSGEPAPIA----KEPRNGQ-----EGG--EPQDPPCSAKPSDRCRGHAARSGGSTAVARVDLPDGASASMGGSTCFEVDRDDPCLSAGGEEDGVFYPFPSPFQSEPADLMTPAFAGRRRGLLGSVFESIERGDAVGMIRQAWSRHYGKACTGLNWNLFPDGVEGWATVASAIGPLPLSCICRNLASNYWAWRHGLPDLLLWRENAAAEQAATAATSS-CPMAGSS-------DQDASDFVADPDPAGSRATVSLNNDK-KNGGDRMASTADIEVLPNRDARCKWVEVKGPGDSLSCAQEAWIDALVGAGADVALLRVEDDAA 1307          
BLAST of mRNA_S-dermatodea_contig1194.1214.1 vs. uniprot
Match: D7FLL1_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL1_ECTSI)

HSP 1 Score: 726 bits (1875), Expect = 1.030e-240
Identity = 529/1225 (43.18%), Postives = 626/1225 (51.10%), Query Frame = 0
Query:    1 MSYAPVFQDARTPGMGSTNGAWGWASQSHVFGGVRAC--VPAFPSADALSGAANSNDSDLEIQEGCFGVAAQKRRLPSQNFEVMFSWLSSTQTSPSPSWGAVASAASAAGAVAHPKS---------------LLEVALERRDGAPAAAFMTLASLSPKFSGKEAAYEVHQGT-DAIALALRLYHARSTWRRVSRRSAQRRRGQGPGSRLHPDDPVLAAAVDEADSLERQQRASADYDAGMVLLNTGLAVSLLDAAGGGLKCGGGAGSAGSFGRGDSGVGNDADPLAALVPREALMVAETRALTKALGISSIVAREHQSSSSGRGRSASWGGKTDSGRGRXXXXXXXXXXXXVDGKEEACQALEKWFSHPVDVAKRKARVGRAARQAADLIAAGDRKSSGGGGRDNAAGVGKASGDVLVLRLADDAREAIHRVHVAFFGAARHGPHDVPAVLAEDLRL-VLFGGACAGGESCHRYNPGCSDGAKGRVKETVPPRPTPRILSSVEAFAEYYRLVTLADAMDFAAEAGDSGLAYGSLHEASTALLPAGCPLCRQHRPHNCGDAVGAAMVGDNGLPEQSPATPPQCDICELSARVVMRGVGLMEREKDYDNAFHYLDILLKASSQRLSVHRPRYWLRLVTDLNHKKRSIEALRACEQAFAEADGPPTVASCIGDATQLSPGPNHRNGXXXXXXXXXXXXEAAAILPLGECLPLLRRAVRLAVPPLRWRKRPPPQLREARLRVMSLDLSWRRGGGGDFGGRSSSLIPRDLLAGPASASAAEDVEANRAEPDVMSGEEGNGGEEYERGAGGGDGADGMGGEQTGSATIVPGTSLEQAVLNTMLAELGPEWTGLHAENRQDLFWGGGGICLGLYALLCWDALFAPLVPAT-AADAATATVAVDSSTVGRGVVAHASSSSPALSGNGGKTAKNG---------------SAVSCGEGGVCEMSTPKGVIRAADAADDWASVSGALESSPKMDGRPFSQG-HEAFFYHPFPSPYQSEPADLMTTVFAGRRRHLLEGVYASIEGRQASTLLRRNWARHCGKACTGLNWNLFPNGVEGWVTVASAIGPLPLSRVCRNLASNYWAWRHGLSDLFLWRKDAAVTSGAAAVESSPCPPFEESAPRVKPPDFTPAVVVVEGGPPGDTVVEAVVEGKIANGGASV---------PTREGRCMWVEVKGPGDSLSCAQEGWIDTLVGAGAEAVLLRVEDTAS 1180
            +S+ PVFQD R PGMGST+G WGWASQS VFGG RAC   P+ P  +  SG    +D     +        + R L S+NF+ M +WLSS+  +      AVA AA    A   P+S               LLE+ALER+DG PA AFMTL SL+P+   +E          + +ALALRLYH  STWRR+SR    RR  QGPGSRLHPD+P LAAAVDEAD  ER++R+ A++   + LL+ GLAVSL DA   G K  G  G  G+ GR D     D DPL AL PREAL                                                                                       A RQAA+ + AG ++  G GG          +  ++VLRL D+AREAIHRVHVAFF AARHGP D P VL E L   V+F GA A G   H+   G S    G+ +     RP PR+LS VEAFAEYYRLV+L+DAM+ AA AGD GLAYGSLHEASTAL P+GCPLCR++   +      +   G              CDICELSARVVMRGVGLMER+KDYD+AFHYLDILL+ASSQRLSVHRPRYW+RLVTDL HKKRS+ AL+ACE+A AEA  PP   S     T  SP                                    AV +  P +   +   P+ REA            R GG + G                                                               GSA I PGTSLEQAVLN MLAEL P W GLHAEN          ICLGL+ALLCWDALFAPLVPA+  A AAT    V      R  +A AS     ++    K  +NG               S    G G     ST    +   D A   AS+ G+       D    S G  E   ++PFPSP+QSEPADLMT  FA RRR LL GV+ SIE  +A  ++R+ W+RH GKACTGLNWNLFPNGVEGW TVASAIGPLPLS +CRNLASNYWAWRHGL DLFLWR++AA    A A E+S CP    S       D   +    +  P G     ++ + +  NGG  +         P +E  C WVEVKGPGDSLSCAQE WID LVGAGA+  +LRVED A+
Sbjct:  145 LSHTPVFQDLRPPGMGSTSG-WGWASQSQVFGGARACRASPSVPPRER-SGETGGDDVPDSARATVVAAGGRSRALQSRNFKAMVAWLSSSHAA-----SAVAVAAPVPAAAGXPRSXXXXXXXXANPADKTLLEIALERQDGGPATAFMTLMSLAPEALEEEXXXXXXXXXXEPLALALRLYHGASTWRRISRDPPPRR--QGPGSRLHPDNPGLAAAVDEADDRERRRRSGAEHAGALALLSAGLAVSLRDA---GAK--GSGGRRGTSGRRDD--LEDPDPLVALAPREALT--------------------------------------------------------------------------------------ATRQAAEDLVAGRKERDGEGG----------AAAIVVLRLTDEAREAIHRVHVAFFAAARHGPQDAPVVLREGLDDGVVFAGAAATGADGHKAK-GSSRFVAGKGRR----RPAPRVLSCVEAFAEYYRLVSLSDAMELAAGAGDPGLAYGSLHEASTALFPSGCPLCRRNHLRHRTVTADSVDGGXXXXXXXXXXXXXHCDICELSARVVMRGVGLMERDKDYDSAFHYLDILLQASSQRLSVHRPRYWVRLVTDLGHKKRSMAALQACEKALAEASLPPPAES-----TAASP------------------------------------AVTMRTPAVEAAQEGFPERREA-------GEGEGRVGGSEGGXXXXXXXXXXXX------------------------------------------------XXGGSAGIAPGTSLEQAVLNAMLAELEPGWKGLHAENS---------ICLGLFALLCWDALFAPLVPASPGAIAATPGTPVRRP---REPMADASGEPAPIA----KEPRNGQEEGEPQDPHCSAKPSGRCRGSGARSGGSTAVARVNLPDGAS--ASMGGSTCFEVTRDDPSLSAGGEENGVFYPFPSPFQSEPADLMTPAFARRRRSLLGGVFESIERGRAVAMIRQAWSRHYGKACTGLNWNLFPNGVEGWATVASAIGPLPLSCICRNLASNYWAWRHGLPDLFLWRENAAAEQAATA-ETSRCPMAGSS-------DQDASDFGADSDPAGSQATVSLDKDRRKNGGGRMATTADVEVLPRKEACCKWVEVKGPGDSLSCAQEAWIDALVGAGADFAVLRVEDAAA 1130          
BLAST of mRNA_S-dermatodea_contig1194.1214.1 vs. uniprot
Match: W7U0K5_9STRA (Fanconi-associated nuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0K5_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.970e-7
Identity = 57/178 (32.02%), Postives = 81/178 (45.51%), Query Frame = 0
Query:  476 TPRILSSVEAFAEYYRLVTLADAMDFAAEAGDSGLAYGSLHEASTALLPAGCPLCRQHRPHN------CGDA----VGAAMVGDNGLPEQSPATPPQCD-----ICELSARVVMRGVGLMEREKDYDNAFHYLDILLKASSQRLSVHRPRYWLRLVTDLNHKKRSIEALRACEQAFAE 638
            +P I  +   FA+    ++L+DA + A  +GDS  AY  LH  S   LP   P+   H   +      C       V     G +      PA     +     + ++ ARV+ RG+GL+ER++ +  A HYL I+L  S       R  +  RLV DL H  R  EAL ACE A A+
Sbjct:  511 SPEIPCAYRQFAD--TTLSLSDAFEAAVASGDSATAYACLHTVSDLFLPR--PMLPAHASGSVVSDPACTSLAALEVTQVKTGTHRFQLDVPAEYRGLEELPGILFKVLARVIGRGIGLLERDRKHAQAVHYLKIILDGSEPLPWSLRGHFHSRLVLDLVHCNRPGEALAACEHALAD 684          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1194.1214.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KNP8_9PHAE6.490e-30550.43Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
D7FLL1_ECTSI1.030e-24043.18Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
W7U0K5_9STRA2.970e-732.02Fanconi-associated nuclease n=2 Tax=Monodopsidacea... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014883VRR-NUC domainSMARTSM00990VRR_NUC_a_2coord: 996..1177
e-value: 7.0E-11
score: 52.1
IPR014883VRR-NUC domainPFAMPF08774VRR_NUCcoord: 1137..1176
e-value: 4.1E-6
score: 26.8
IPR033315Fanconi-associated nuclease 1-likePANTHERPTHR15749FAMILY NOT NAMEDcoord: 398..1179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1194contigS-dermatodea_contig1194:11980..19133 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1194.1214.1mRNA_S-dermatodea_contig1194.1214.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1194 11867..19268 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1194.1214.1 ID=prot_S-dermatodea_contig1194.1214.1|Name=mRNA_S-dermatodea_contig1194.1214.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=1183bp
MSYAPVFQDARTPGMGSTNGAWGWASQSHVFGGVRACVPAFPSADALSGA
ANSNDSDLEIQEGCFGVAAQKRRLPSQNFEVMFSWLSSTQTSPSPSWGAV
ASAASAAGAVAHPKSLLEVALERRDGAPAAAFMTLASLSPKFSGKEAAYE
VHQGTDAIALALRLYHARSTWRRVSRRSAQRRRGQGPGSRLHPDDPVLAA
AVDEADSLERQQRASADYDAGMVLLNTGLAVSLLDAAGGGLKCGGGAGSA
GSFGRGDSGVGNDADPLAALVPREALMVAETRALTKALGISSIVAREHQS
SSSGRGRSASWGGKTDSGRGRRGSGGRGGGGGGVDGKEEACQALEKWFSH
PVDVAKRKARVGRAARQAADLIAAGDRKSSGGGGRDNAAGVGKASGDVLV
LRLADDAREAIHRVHVAFFGAARHGPHDVPAVLAEDLRLVLFGGACAGGE
SCHRYNPGCSDGAKGRVKETVPPRPTPRILSSVEAFAEYYRLVTLADAMD
FAAEAGDSGLAYGSLHEASTALLPAGCPLCRQHRPHNCGDAVGAAMVGDN
GLPEQSPATPPQCDICELSARVVMRGVGLMEREKDYDNAFHYLDILLKAS
SQRLSVHRPRYWLRLVTDLNHKKRSIEALRACEQAFAEADGPPTVASCIG
DATQLSPGPNHRNGGGGDGGKAAASAEAAAILPLGECLPLLRRAVRLAVP
PLRWRKRPPPQLREARLRVMSLDLSWRRGGGGDFGGRSSSLIPRDLLAGP
ASASAAEDVEANRAEPDVMSGEEGNGGEEYERGAGGGDGADGMGGEQTGS
ATIVPGTSLEQAVLNTMLAELGPEWTGLHAENRQDLFWGGGGICLGLYAL
LCWDALFAPLVPATAADAATATVAVDSSTVGRGVVAHASSSSPALSGNGG
KTAKNGSAVSCGEGGVCEMSTPKGVIRAADAADDWASVSGALESSPKMDG
RPFSQGHEAFFYHPFPSPYQSEPADLMTTVFAGRRRHLLEGVYASIEGRQ
ASTLLRRNWARHCGKACTGLNWNLFPNGVEGWVTVASAIGPLPLSRVCRN
LASNYWAWRHGLSDLFLWRKDAAVTSGAAAVESSPCPPFEESAPRVKPPD
FTPAVVVVEGGPPGDTVVEAVVEGKIANGGASVPTREGRCMWVEVKGPGD
SLSCAQEGWIDTLVGAGAEAVLLRVEDTASPR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014883VRR_NUC
IPR033315Fan1-like