mRNA_S-dermatodea_contig1194.1214.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig1194.1214.1 vs. uniprot
Match: A0A6H5KNP8_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP8_9PHAE) HSP 1 Score: 968 bits (2502), Expect = 0.000e+0 Identity = 674/1317 (51.18%), Postives = 798/1317 (60.59%), Query Frame = 1
Query: 4 PSPSWGKIVDPRKQHRWELLRRVQGRGDVGGGVDPTAWARRSYTMSYAPVFQDARTPGMGSTNGAWGWASQSHVFGGVRAC-----VPAFPSADALSGAANSNDSDLEIQEGCFGVAA---QKRRLPSQNFEVMFSWLSSTQTSPS----PSWGAVASAASAAGAVAHP--KSLLEVALERRDGAPAAAFMTLASLSPKFSGKEAAYEVHQGTDAIALALRLYHARSTWRRVSRRSAQRRRGQGPGSRLHPDDPVLAAAVDEADSLERQQRASADYDAGMVLLNTGLAVSLLDAAGGGLKCGGGAGSAGSFGR-GDSGVGNDA---DPLAALVPREALMVAETRALTKALGI---SSIVAREHQSSSSGRGRSASWGGKTDSGRGRXXXXXXXXXXXXVDGKEEACQALEKWFSHPVDVAKRKARVGRAARQAADLIAAGDRKSSGGGGRDNAAGVGKASGDVLVLRLADDAREAIHRVHVAFFGAARHGPHDVPAVLAEDL-RLVLFGGACAGGESCHRYNPGCSDGAKGRVKETVPPRPTPRILSSVEAFAEYYRLVTLADAMDFAAEAGDSGLAYGSLHEASTALLPAGCPLCRQ-HRPHNCGDAVGAAMVGDNG--LPEQSPATPPQCDICELSARVVMRGVGLMEREKDYDNAFHYLDILLKASSQRLSVHRPRYWLRLVTDLNHKKRSIEALRACEQAFAEAD-GPP----------TVASCIGDATQLSPGPN-------------HRNGXXXXXXXXXXXXEAAAILPLGECLPLLRRAVRLAVPPLRWRKRPPPQLREARLRVMSLDLSWRRGGGGDFGGRSSSLIPRDLLAGPASASAAEDVEANRAEPDVMSGEEGNGGEEYERGAGGGDGADGM-------------GGEQTGSATIVPGTSLEQAVLNTMLAELGPEWTGLHAENRQDLFWGGGGICLGLYALLCWDALFAPLVPATAAD-AATATVAVDSSTVGRGVVAHASSSSPALSGNGGKTAKNGSAVSCGEGGVCEMSTPKGVIRAADAADDWASVSGALESSPKMD---GRPFSQGHEAFF------------------YHPFPSPYQSEPADLMTTVFAGRRRHLLEGVYASIEGRQASTLLRRNWARHCGKACTGLNWNLFPNGVEGWVTVASAIGPLPLSRVCRNLASNYWAWRHGLSDLFLWRKDAAVTSGAAAVESSPCPPFEESAPRVKPPDFTPAVVVVEGGPPGDTVVEAVVEGKIANGGASV---------PTREGRCMWVEVKGPGDSLSCAQEGWIDTLVGAGAEAVLLRVEDTAS 3675
P+P+WGK+V+PRKQ RWE+LRR+QG G GGVDPTAWARRSY++SY PVFQD RTPGMGS++G WGWA QS VFGG RAC VP +D G E+ + AA + R L S+NF+ M +WLSS+ + + A A + A A P K+LLE+ALER+DG PA AFMTL SL+P+ +EA E ++ +ALALRLYH STWRR+SR RR QGPGSRLHPDDP LAAAVDEAD ER++R+ A++ + LL+ GLAVSL DA G+ GS GR G SG +D D LAAL REAL +ETR+L KAL + SS + RE SSS XXXXXXXXXX V+GK+E C+ LE+W + P D AKR+ R+ RAARQAA+ +AAG + G GG + V+VLRL D+A+EAIHRVHVAFF AARHGP DV AVL E L V+F GA A G H G S G G+ ++ RP PR+LS VEAF EYY+LV+L+DAM+ AA AGD GLAYGSLHEASTALLP+GCPLCR+ H H V A V G L + P CDICELSARVVMRGVGLMER+KDYD+AFHYLDILL+ASSQRLSVHRPRYWLRLVTDL HKKRS+ AL+ACE+A AEA PP T+ + +A Q + P+ XXXXXXXX +AAAILPLGE LPLLRRA+RLAVPPLRWRKRPPP+L+EARLRVM LDLSWRR G D G +S R+ + PA+A++ E G RGAG G+ G E GS I PGTSLEQAVLN MLAEL P W GLHAEN ICLGL+ALLCWDALFAPLVPA+ + AAT V S R VA S ++ K +NG EGG E P + +D A+ SG + ++D G S G F ++PFPSP+QSEPADLMT FAGRRR LL V+ SIE A ++R+ W+RH GKACTGLNWNLFP+GVEGW TVASAIGPLPLS +CRNLASNYWAWRHGL DL LWR++AA A A SS CP S D + V + P G ++ K NGG + P R+ RC WVEVKGPGDSLSCAQE WID LVGAGA+ LLRVED A+
Sbjct: 103 PAPTWGKLVEPRKQRRWEMLRRLQGGGL--GGVDPTAWARRSYSLSYTPVFQDLRTPGMGSSSG-WGWAFQSQVFGGARACRASSSVPPRDRSDETDG--------NEVPDSVHATAAAGGRSRALQSRNFKAMVAWLSSSHAASAVXXXXXXXXAAGALRSPRAAADPADKTLLEIALERQDGGPATAFMTLMSLAPEALAEEAEAEANE---PLALALRLYHGASTWRRISRDPPPRR--QGPGSRLHPDDPGLAAAVDEADDCERRRRSGAEHAGALALLSAGLAVSLRDA-----------GAKGSGGRQGKSGQRDDLEDPDLLAALALREALTASETRSLAKALILGDTSSSLRREPGSSSXXXXX--------------XXXXXXXXXXAAVEGKDETCRELEEWLTRPEDAAKRRRRLSRAARQAAEDLAAGRTEGDGEGG----------ATAVVVLRLTDEAQEAIHRVHVAFFAAARHGPQDVLAVLREGLDEGVVFAGAAATGAGGHEAK-GSSRGVAGKGRK----RPAPRVLSCVEAFGEYYKLVSLSDAMELAAGAGDPGLAYGSLHEASTALLPSGCPLCRRNHLRHR---TVSADSVDGRGAALTRTTTTPPSHCDICELSARVVMRGVGLMERDKDYDSAFHYLDILLQASSQRLSVHRPRYWLRLVTDLGHKKRSMAALQACEKALAEASLSPPAESTAASPAVTMRTSAVEAAQGAEDPDCSLVNESPRVTSAEPAAPAXXXXXXXXAEQAAAILPLGESLPLLRRAIRLAVPPLRWRKRPPPKLKEARLRVMQLDLSWRRAG--DAVGSASMTPTRNPPSRPATAASEE-------------------GFPERRGAGEGEXXXXXXXXXXXXXXXXXSGCEGRGSVRIAPGTSLEQAVLNAMLAELEPGWKGLHAENS---------ICLGLFALLCWDALFAPLVPASPGEIAATPRTPVCRS---REPVADTSGEPAPIA----KEPRNGQ-----EGG--EPQDPPCSAKPSDRCRGHAARSGGSTAVARVDLPDGASASMGGSTCFEVDRDDPCLSAGGEEDGVFYPFPSPFQSEPADLMTPAFAGRRRGLLGSVFESIERGDAVGMIRQAWSRHYGKACTGLNWNLFPDGVEGWATVASAIGPLPLSCICRNLASNYWAWRHGLPDLLLWRENAAAEQAATAATSS-CPMAGSS-------DQDASDFVADPDPAGSRATVSLNNDK-KNGGDRMASTADIEVLPNRDARCKWVEVKGPGDSLSCAQEAWIDALVGAGADVALLRVEDDAA 1307
BLAST of mRNA_S-dermatodea_contig1194.1214.1 vs. uniprot
Match: D7FLL1_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL1_ECTSI) HSP 1 Score: 797 bits (2058), Expect = 5.980e-267 Identity = 561/1270 (44.17%), Postives = 666/1270 (52.44%), Query Frame = 1
Query: 1 APSPSWGKIVDPRKQHRWELLRRVQGRGDVGGGVDPTAWARRSYTMSYAPVFQDARTPGMGSTNGAWGWASQSHVFGGVRAC--VPAFPSADALSGAANSNDSDLEIQEGCFGVAAQKRRLPSQNFEVMFSWLSSTQTSPSPSWGAVASAASAAGAVAHPKS---------------LLEVALERRDGAPAAAFMTLASLSPKFSGKEAAYEVHQGT-DAIALALRLYHARSTWRRVSRRSAQRRRGQGPGSRLHPDDPVLAAAVDEADSLERQQRASADYDAGMVLLNTGLAVSLLDAAGGGLKCGGGAGSAGSFGRGDSGVGNDADPLAALVPREALMVAETRALTKALGISSIVAREHQSSSSGRGRSASWGGKTDSGRGRXXXXXXXXXXXXVDGKEEACQALEKWFSHPVDVAKRKARVGRAARQAADLIAAGDRKSSGGGGRDNAAGVGKASGDVLVLRLADDAREAIHRVHVAFFGAARHGPHDVPAVLAEDLRL-VLFGGACAGGESCHRYNPGCSDGAKGRVKETVPPRPTPRILSSVEAFAEYYRLVTLADAMDFAAEAGDSGLAYGSLHEASTALLPAGCPLCRQHRPHNCGDAVGAAMVGDNGLPEQSPATPPQCDICELSARVVMRGVGLMEREKDYDNAFHYLDILLKASSQRLSVHRPRYWLRLVTDLNHKKRSIEALRACEQAFAEADGPPTVASCIGDATQLSPGPNHRNGXXXXXXXXXXXXEAAAILPLGECLPLLRRAVRLAVPPLRWRKRPPPQLREARLRVMSLDLSWRRGGGGDFGGRSSSLIPRDLLAGPASASAAEDVEANRAEPDVMSGEEGNGGEEYERGAGGGDGADGMGGEQTGSATIVPGTSLEQAVLNTMLAELGPEWTGLHAENRQDLFWGGGGICLGLYALLCWDALFAPLVPAT-AADAATATVAVDSSTVGRGVVAHASSSSPALSGNGGKTAKNG---------------SAVSCGEGGVCEMSTPKGVIRAADAADDWASVSGALESSPKMDGRPFSQG-HEAFFYHPFPSPYQSEPADLMTTVFAGRRRHLLEGVYASIEGRQASTLLRRNWARHCGKACTGLNWNLFPNGVEGWVTVASAIGPLPLSRVCRNLASNYWAWRHGLSDLFLWRKDAAVTSGAAAVESSPCPPFEESAPRVKPPDFTPAVVVVEGGPPGDTVVEAVVEGKIANGGASV---------PTREGRCMWVEVKGPGDSLSCAQEGWIDTLVGAGAEAVLLRVEDTAS 3675
+P+P+WGK+V+PRKQ RWE+LRR+QG G GGVDPTAWARRSY++S+ PVFQD R PGMGST+G WGWASQS VFGG RAC P+ P + SG +D + + R L S+NF+ M +WLSS+ + AVA AA A P+S LLE+ALER+DG PA AFMTL SL+P+ +E + +ALALRLYH STWRR+SR RR QGPGSRLHPD+P LAAAVDEAD ER++R+ A++ + LL+ GLAVSL DA G K G G G+ GR D D DPL AL PREAL A RQAA+ + AG ++ G GG + ++VLRL D+AREAIHRVHVAFF AARHGP D P VL E L V+F GA A G H+ G S G+ + RP PR+LS VEAFAEYYRLV+L+DAM+ AA AGD GLAYGSLHEASTAL P+GCPLCR++ + + G CDICELSARVVMRGVGLMER+KDYD+AFHYLDILL+ASSQRLSVHRPRYW+RLVTDL HKKRS+ AL+ACE+A AEA PP S T SP AV + P + + P+ REA R GG + G GSA I PGTSLEQAVLN MLAEL P W GLHAEN ICLGL+ALLCWDALFAPLVPA+ A AAT V R +A AS ++ K +NG S G G ST + D A AS+ G+ D S G E ++PFPSP+QSEPADLMT FA RRR LL GV+ SIE +A ++R+ W+RH GKACTGLNWNLFPNGVEGW TVASAIGPLPLS +CRNLASNYWAWRHGL DLFLWR++AA A A E+S CP S D + + P G ++ + + NGG + P +E C WVEVKGPGDSLSCAQE WID LVGAGA+ +LRVED A+
Sbjct: 102 SPAPTWGKLVEPRKQQRWEMLRRLQGGGL--GGVDPTAWARRSYSLSHTPVFQDLRPPGMGSTSG-WGWASQSQVFGGARACRASPSVPPRER-SGETGGDDVPDSARATVVAAGGRSRALQSRNFKAMVAWLSSSHAA-----SAVAVAAPVPAAAGXPRSXXXXXXXXANPADKTLLEIALERQDGGPATAFMTLMSLAPEALEEEXXXXXXXXXXEPLALALRLYHGASTWRRISRDPPPRR--QGPGSRLHPDNPGLAAAVDEADDRERRRRSGAEHAGALALLSAGLAVSLRDA---GAK--GSGGRRGTSGRRDD--LEDPDPLVALAPREALT--------------------------------------------------------------------------------------ATRQAAEDLVAGRKERDGEGG----------AAAIVVLRLTDEAREAIHRVHVAFFAAARHGPQDAPVVLREGLDDGVVFAGAAATGADGHKAK-GSSRFVAGKGRR----RPAPRVLSCVEAFAEYYRLVSLSDAMELAAGAGDPGLAYGSLHEASTALFPSGCPLCRRNHLRHRTVTADSVDGGXXXXXXXXXXXXXHCDICELSARVVMRGVGLMERDKDYDSAFHYLDILLQASSQRLSVHRPRYWVRLVTDLGHKKRSMAALQACEKALAEASLPPPAES-----TAASP------------------------------------AVTMRTPAVEAAQEGFPERREA-------GEGEGRVGGSEGGXXXXXXXXXXXX------------------------------------------------XXGGSAGIAPGTSLEQAVLNAMLAELEPGWKGLHAENS---------ICLGLFALLCWDALFAPLVPASPGAIAATPGTPVRRP---REPMADASGEPAPIA----KEPRNGQEEGEPQDPHCSAKPSGRCRGSGARSGGSTAVARVNLPDGAS--ASMGGSTCFEVTRDDPSLSAGGEENGVFYPFPSPFQSEPADLMTPAFARRRRSLLGGVFESIERGRAVAMIRQAWSRHYGKACTGLNWNLFPNGVEGWATVASAIGPLPLSCICRNLASNYWAWRHGLPDLFLWRENAAAEQAATA-ETSRCPMAGSS-------DQDASDFGADSDPAGSQATVSLDKDRRKNGGGRMATTADVEVLPRKEACCKWVEVKGPGDSLSCAQEAWIDALVGAGADFAVLRVEDAAA 1130
BLAST of mRNA_S-dermatodea_contig1194.1214.1 vs. uniprot
Match: W7U0K5_9STRA (Fanconi-associated nuclease n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0K5_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 3.240e-7 Identity = 57/178 (32.02%), Postives = 81/178 (45.51%), Query Frame = 1
Query: 1561 TPRILSSVEAFAEYYRLVTLADAMDFAAEAGDSGLAYGSLHEASTALLPAGCPLCRQHRPHN------CGDA----VGAAMVGDNGLPEQSPATPPQCD-----ICELSARVVMRGVGLMEREKDYDNAFHYLDILLKASSQRLSVHRPRYWLRLVTDLNHKKRSIEALRACEQAFAE 2049
+P I + FA+ ++L+DA + A +GDS AY LH S LP P+ H + C V G + PA + + ++ ARV+ RG+GL+ER++ + A HYL I+L S R + RLV DL H R EAL ACE A A+
Sbjct: 511 SPEIPCAYRQFAD--TTLSLSDAFEAAVASGDSATAYACLHTVSDLFLPR--PMLPAHASGSVVSDPACTSLAALEVTQVKTGTHRFQLDVPAEYRGLEELPGILFKVLARVIGRGIGLLERDRKHAQAVHYLKIILDGSEPLPWSLRGHFHSRLVLDLVHCNRPGEALAACEHALAD 684 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1194.1214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1194.1214.1 >prot_S-dermatodea_contig1194.1214.1 ID=prot_S-dermatodea_contig1194.1214.1|Name=mRNA_S-dermatodea_contig1194.1214.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=1183bp MSYAPVFQDARTPGMGSTNGAWGWASQSHVFGGVRACVPAFPSADALSGAback to top mRNA from alignment at S-dermatodea_contig1194:11867..19268- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1194.1214.1 ID=mRNA_S-dermatodea_contig1194.1214.1|Name=mRNA_S-dermatodea_contig1194.1214.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7402bp|location=Sequence derived from alignment at S-dermatodea_contig1194:11867..19268- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1194:11867..19268- >mRNA_S-dermatodea_contig1194.1214.1 ID=mRNA_S-dermatodea_contig1194.1214.1|Name=mRNA_S-dermatodea_contig1194.1214.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=7098bp|location=Sequence derived from alignment at S-dermatodea_contig1194:11867..19268- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |