prot_S-dermatodea_contig11867.1170.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11867.1170.1
Unique Nameprot_S-dermatodea_contig11867.1170.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length422
Homology
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BLAST of mRNA_S-dermatodea_contig11867.1170.1 vs. uniprot
Match: D7FKM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM7_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.750e-21
Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = 0 
Query:    1 SLQEILGITDAEADKLQGHARTTGPGYNNLVATKEGSAAAGAT--------PPSDSFASFLLGELSVKAEHVRALVLRNPTVLNRSTDGVMHVSQWLQDTLGMSRADVARLLLRFPEAGHCSVINNLEPTV 123
            SLQ ILGI+D +A+ ++   +TT  G++NL++  +G    G          PPS  F  FLL EL    E V++LVLR P VL  S      VS+WLQD LGM++++VARLLLR PEAG  SV N +EP V
Sbjct:   35 SLQAILGISDTQAEIIRSSGQTTKTGFDNLISVSDGGDRPGTNVSFTKSSPPPSSCFPRFLLHELHAAPEDVKSLVLRRPVVLGWSAVAAGKVSRWLQDCLGMNQSEVARLLLRHPEAGTKSVENTVEPKV 165
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BLAST of mRNA_S-dermatodea_contig11867.1170.1 vs. uniprot
Match: A0A6H5JAG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.070e-5
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 0 
Query:   52 FLLGELSVKAEHVRALVLRNPTVLNRSTDGVMHVSQWLQDTLGMSRADVARLLLRFPEAGHCSVINNLEP 121
            +LLGEL ++ E V+  VLR P +++ S  G   V+ WLQ  LG+S  DV +++ + P    CS+++NL P
Sbjct:  330 YLLGELRMRPEEVKDAVLRWPALMSLSKRGPHAVTSWLQGGLGLSTDDVGKMIRKNPAIVACSIVHNLRP 399
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11867.1170.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKM7_ECTSI1.750e-2146.56Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JAG1_9PHAE1.070e-540.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 101..133
e-value: 140.0
score: 10.6
coord: 250..282
e-value: 0.001
score: 28.3
coord: 361..392
e-value: 190.0
score: 9.5
coord: 175..207
e-value: 0.011
score: 24.9
coord: 287..319
e-value: 56.0
score: 12.6
coord: 213..245
e-value: 0.053
score: 22.7
coord: 324..356
e-value: 0.01
score: 25.0
coord: 138..170
e-value: 0.0012
score: 28.2
coord: 65..96
e-value: 230.0
score: 8.9
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 53..325
e-value: 3.5E-32
score: 111.6
coord: 315..393
e-value: 6.3E-7
score: 28.6
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 189..333
e-value: 5.6E-28
score: 99.8
coord: 82..188
e-value: 4.5E-18
score: 67.4
coord: 334..405
e-value: 1.9E-7
score: 32.6
NoneNo IPR availablePANTHERPTHR13068:SF36TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTICcoord: 131..287
coord: 300..389
NoneNo IPR availablePANTHERPTHR13068:SF36TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTICcoord: 260..313
coord: 56..238
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 131..287
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 260..313
coord: 300..389
coord: 56..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11867contigS-dermatodea_contig11867:1366..2631 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11867.1170.1mRNA_S-dermatodea_contig11867.1170.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11867 1366..2631 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11867.1170.1 ID=prot_S-dermatodea_contig11867.1170.1|Name=mRNA_S-dermatodea_contig11867.1170.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=422bp
SLQEILGITDAEADKLQGHARTTGPGYNNLVATKEGSAAAGATPPSDSFA
SFLLGELSVKAEHVRALVLRNPTVLNRSTDGVMHVSQWLQDTLGMSRADV
ARLLLRFPEAGHCSVINNLEPTVMWLRENLGTDYRGVAKMLRHAPQILGT
SVENKLEPRLLWLENRLQISAEKAAKIARSFPSLLVYSAENKFEPTLAWL
QQRLGIEDESAVLAMVATCPNILYRNTETGIEPKLEWLQYRLGLNPMEVC
RIVRAHPPILTRSIEKSLEPKLAWLLKTLGVDLEEAKSMLLRCPTITGAS
IEYNLDLKLPWFQKTLGLSLEEAVAVLTKSPLLLVLSIEKNLDPTILFFR
KEMNASEEDIRNSLGQNPLLMTYSLKMRFHPRVAALRAAGVEPVFSEHHL
QVILFTTTKFDAFLHSVRQAK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf