mRNA_S-dermatodea_contig11867.1170.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_S-dermatodea_contig11867.1170.1
Unique Name	mRNA_S-dermatodea_contig11867.1170.1
Type	mRNA
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)

Homology

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BLAST of mRNA_S-dermatodea_contig11867.1170.1 vs. uniprot
Match: D7FKM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKM7_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.750e-21
Identity = 61/131 (46.56%), Postives = 80/131 (61.07%), Query Frame = 1

Query:    1 SLQEILGITDAEADKLQGHARTTGPGYNNLVATKEGSAAAGAT--------PPSDSFASFLLGELSVKAEHVRALVLRNPTVLNRSTDGVMHVSQWLQDTLGMSRADVARLLLRFPEAGHCSVINNLEPTV 369
            SLQ ILGI+D +A+ ++   +TT  G++NL++  +G    G          PPS  F  FLL EL    E V++LVLR P VL  S      VS+WLQD LGM++++VARLLLR PEAG  SV N +EP V
Sbjct:   35 SLQAILGISDTQAEIIRSSGQTTKTGFDNLISVSDGGDRPGTNVSFTKSSPPPSSCFPRFLLHELHAAPEDVKSLVLRRPVVLGWSAVAAGKVSRWLQDCLGMNQSEVARLLLRHPEAGTKSVENTVEPKV 165

[Close]

BLAST of mRNA_S-dermatodea_contig11867.1170.1 vs. uniprot
Match: A0A6H5JAG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.070e-5
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1

Query:  154 FLLGELSVKAEHVRALVLRNPTVLNRSTDGVMHVSQWLQDTLGMSRADVARLLLRFPEAGHCSVINNLEP 363
            +LLGEL ++ E V+  VLR P +++ S  G   V+ WLQ  LG+S  DV +++ + P    CS+++NL P
Sbjct:  330 YLLGELRMRPEEVKDAVLRWPALMSLSKRGPHAVTSWLQGGLGLSTDDVGKMIRKNPAIVACSIVHNLRP 399

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig11867.1170.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig11867.1170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FKM7_ECTSI	1.750e-21	46.56	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6H5JAG1_9PHAE	1.070e-5	40.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig11867	contig	S-dermatodea_contig11867:1366..2631 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	107.1
Seed ortholog evalue	2.1e-20
Seed eggNOG ortholog	2880.D7FKM7
KEGG ko	ko:K15031,ko:K15032
EggNOG free text desc.	termination of mitochondrial transcription
EggNOG OGs	KOG1267@1,KOG1267@2759
Ec32 ortholog description	Mitochodrial transcription termination factor
Ec32 ortholog	Ec-09_000780.1
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03012,ko03029
Hectar predicted targeting category	other localisation
Exons	1
Model size	1266
Cds size	1266
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622924220.3596685-CDS-S-dermatodea_contig11867:1365..2631	1622924220.3596685-CDS-S-dermatodea_contig11867:1365..2631	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig11867 1366..2631 -
1694079102.497573-CDS-S-dermatodea_contig11867:1365..2631	1694079102.497573-CDS-S-dermatodea_contig11867:1365..2631	Saccorhiza dermatodea SderLu1190fm monoicous	CDS	S-dermatodea_contig11867 1366..2631 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig11867.1170.1	prot_S-dermatodea_contig11867.1170.1	Saccorhiza dermatodea SderLu1190fm monoicous	polypeptide	S-dermatodea_contig11867 1366..2631 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at S-dermatodea_contig11867:1366..2631-
coding sequence from alignment at S-dermatodea_contig11867:1366..2631-

protein sequence of mRNA_S-dermatodea_contig11867.1170.1

>prot_S-dermatodea_contig11867.1170.1 ID=prot_S-dermatodea_contig11867.1170.1|Name=mRNA_S-dermatodea_contig11867.1170.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=422bp
SLQEILGITDAEADKLQGHARTTGPGYNNLVATKEGSAAAGATPPSDSFA
SFLLGELSVKAEHVRALVLRNPTVLNRSTDGVMHVSQWLQDTLGMSRADV
ARLLLRFPEAGHCSVINNLEPTVMWLRENLGTDYRGVAKMLRHAPQILGT
SVENKLEPRLLWLENRLQISAEKAAKIARSFPSLLVYSAENKFEPTLAWL
QQRLGIEDESAVLAMVATCPNILYRNTETGIEPKLEWLQYRLGLNPMEVC
RIVRAHPPILTRSIEKSLEPKLAWLLKTLGVDLEEAKSMLLRCPTITGAS
IEYNLDLKLPWFQKTLGLSLEEAVAVLTKSPLLLVLSIEKNLDPTILFFR
KEMNASEEDIRNSLGQNPLLMTYSLKMRFHPRVAALRAAGVEPVFSEHHL
QVILFTTTKFDAFLHSVRQAK*

mRNA from alignment at S-dermatodea_contig11867:1366..2631-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_S-dermatodea_contig11867.1170.1 ID=mRNA_S-dermatodea_contig11867.1170.1|Name=mRNA_S-dermatodea_contig11867.1170.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1266bp|location=Sequence derived from alignment at S-dermatodea_contig11867:1366..2631- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCACTACAGGAGATTCTCGGGATCACGGACGCAGAAGCGGACAAACTGCA
GGGCCACGCCAGGACGACGGGACCAGGGTACAACAACCTCGTGGCGACGA
AGGAGGGCAGCGCGGCGGCCGGGGCGACACCGCCGTCTGATTCCTTCGCC
TCGTTCCTGCTGGGCGAACTAAGCGTGAAAGCGGAGCACGTCCGAGCTCT
CGTGCTTCGAAACCCGACCGTCCTCAATAGATCGACCGATGGAGTGATGC
ATGTGTCGCAGTGGCTCCAGGACACGCTGGGCATGAGCCGCGCCGACGTC
GCGCGGCTGTTGCTGCGGTTCCCGGAGGCGGGGCACTGCAGCGTGATCAA
CAACCTCGAGCCTACAGTAATGTGGCTGCGGGAGAATCTCGGCACAGACT
ATCGGGGTGTGGCGAAGATGCTACGGCACGCCCCCCAGATCCTGGGAACG
AGCGTGGAGAATAAACTCGAGCCCAGGCTGCTGTGGTTGGAGAATCGGCT
GCAGATTTCCGCGGAGAAGGCGGCTAAAATTGCGCGCAGCTTTCCGTCGC
TGTTGGTGTACAGCGCCGAGAACAAGTTTGAGCCCACCCTGGCATGGCTG
CAGCAGAGGCTGGGGATCGAGGACGAGAGCGCTGTGCTGGCGATGGTGGC
CACCTGTCCCAATATCCTGTACCGCAACACAGAGACAGGGATAGAGCCAA
AATTAGAGTGGCTACAGTATCGGCTGGGGTTGAACCCCATGGAGGTCTGT
CGGATTGTGCGCGCACATCCGCCGATCCTTACCAGAAGCATCGAGAAGAG
CCTGGAGCCGAAACTGGCATGGTTGCTGAAAACCCTCGGCGTGGATTTGG
AGGAGGCCAAGTCAATGTTGCTGCGGTGCCCGACGATTACCGGGGCAAGC
ATAGAGTACAACCTCGACCTGAAGCTTCCGTGGTTCCAAAAGACGCTGGG
CCTGAGCCTCGAAGAAGCGGTGGCCGTATTGACGAAATCTCCGTTGCTTC
TGGTTCTCAGCATCGAGAAGAACCTCGATCCGACGATCTTGTTCTTCCGA
AAAGAAATGAACGCGTCCGAGGAGGACATTAGAAATTCATTGGGGCAGAA
CCCGCTGCTGATGACGTACAGCTTGAAAATGCGATTTCACCCGCGCGTTG
CGGCCTTGAGGGCGGCTGGCGTAGAGCCCGTTTTCTCAGAGCACCACTTG
CAGGTCATCCTGTTCACAACCACTAAGTTTGATGCCTTCCTGCACAGTGT
CCGACAAGCGAAGTAG

Coding sequence (CDS) from alignment at S-dermatodea_contig11867:1366..2631-

>mRNA_S-dermatodea_contig11867.1170.1 ID=mRNA_S-dermatodea_contig11867.1170.1|Name=mRNA_S-dermatodea_contig11867.1170.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2532bp|location=Sequence derived from alignment at S-dermatodea_contig11867:1366..2631- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCACTACAGGAGATTCTCGGGATCACGGACGCAGAAGCGGACAAACTGCA
GGGCCACGCCAGGACGACGGGACCAGGGTACAACAACCTCGTGGCGACGA
AGGAGGGCAGCGCGGCGGCCGGGGCGACACCGCCGTCTGATTCCTTCGCC
TCGTTCCTGCTGGGCGAACTAAGCGTGAAAGCGGAGCACGTCCGAGCTCT
CGTGCTTCGAAACCCGACCGTCCTCAATAGATCGACCGATGGAGTGATGC
ATGTGTCGCAGTGGCTCCAGGACACGCTGGGCATGAGCCGCGCCGACGTC
GCGCGGCTGTTGCTGCGGTTCCCGGAGGCGGGGCACTGCAGCGTGATCAA
CAACCTCGAGCCTACAGTAATGTGGCTGCGGGAGAATCTCGGCACAGACT
ATCGGGGTGTGGCGAAGATGCTACGGCACGCCCCCCAGATCCTGGGAACG
AGCGTGGAGAATAAACTCGAGCCCAGGCTGCTGTGGTTGGAGAATCGGCT
GCAGATTTCCGCGGAGAAGGCGGCTAAAATTGCGCGCAGCTTTCCGTCGC
TGTTGGTGTACAGCGCCGAGAACAAGTTTGAGCCCACCCTGGCATGGCTG
CAGCAGAGGCTGGGGATCGAGGACGAGAGCGCTGTGCTGGCGATGGTGGC
CACCTGTCCCAATATCCTGTACCGCAACACAGAGACAGGGATAGAGCCAA
AATTAGAGTGGCTACAGTATCGGCTGGGGTTGAACCCCATGGAGGTCTGT
CGGATTGTGCGCGCACATCCGCCGATCCTTACCAGAAGCATCGAGAAGAG
CCTGGAGCCGAAACTGGCATGGTTGCTGAAAACCCTCGGCGTGGATTTGG
AGGAGGCCAAGTCAATGTTGCTGCGGTGCCCGACGATTACCGGGGCAAGC
ATAGAGTACAACCTCGACCTGAAGCTTCCGTGGTTCCAAAAGACGCTGGG
CCTGAGCCTCGAAGAAGCGGTGGCCGTATTGACGAAATCTCCGTTGCTTC
TGGTTCTCAGCATCGAGAAGAACCTCGATCCGACGATCTTGTTCTTCCGA
AAAGAAATGAACGCGTCCGAGGAGGACATTAGAAATTCATTGGGGCAGAA
CCCGCTGCTGATGACGTACAGCTTGAAAATGCGATTTCACCCGCGCGTTG
CGGCCTTGAGGGCGGCTGGCGTAGAGCCCGTTTTCTCAGAGCACCACTTG
CAGGTCATCCTGTTCACAACCACTAAGTTTGATGCCTTCCTGCACAGTGT
CCGACAAGCGAAGTAGTCACTACAGGAGATTCTCGGGATCACGGACGCAG
AAGCGGACAAACTGCAGGGCCACGCCAGGACGACGGGACCAGGGTACAAC
AACCTCGTGGCGACGAAGGAGGGCAGCGCGGCGGCCGGGGCGACACCGCC
GTCTGATTCCTTCGCCTCGTTCCTGCTGGGCGAACTAAGCGTGAAAGCGG
AGCACGTCCGAGCTCTCGTGCTTCGAAACCCGACCGTCCTCAATAGATCG
ACCGATGGAGTGATGCATGTGTCGCAGTGGCTCCAGGACACGCTGGGCAT
GAGCCGCGCCGACGTCGCGCGGCTGTTGCTGCGGTTCCCGGAGGCGGGGC
ACTGCAGCGTGATCAACAACCTCGAGCCTACAGTAATGTGGCTGCGGGAG
AATCTCGGCACAGACTATCGGGGTGTGGCGAAGATGCTACGGCACGCCCC
CCAGATCCTGGGAACGAGCGTGGAGAATAAACTCGAGCCCAGGCTGCTGT
GGTTGGAGAATCGGCTGCAGATTTCCGCGGAGAAGGCGGCTAAAATTGCG
CGCAGCTTTCCGTCGCTGTTGGTGTACAGCGCCGAGAACAAGTTTGAGCC
CACCCTGGCATGGCTGCAGCAGAGGCTGGGGATCGAGGACGAGAGCGCTG
TGCTGGCGATGGTGGCCACCTGTCCCAATATCCTGTACCGCAACACAGAG
ACAGGGATAGAGCCAAAATTAGAGTGGCTACAGTATCGGCTGGGGTTGAA
CCCCATGGAGGTCTGTCGGATTGTGCGCGCACATCCGCCGATCCTTACCA
GAAGCATCGAGAAGAGCCTGGAGCCGAAACTGGCATGGTTGCTGAAAACC
CTCGGCGTGGATTTGGAGGAGGCCAAGTCAATGTTGCTGCGGTGCCCGAC
GATTACCGGGGCAAGCATAGAGTACAACCTCGACCTGAAGCTTCCGTGGT
TCCAAAAGACGCTGGGCCTGAGCCTCGAAGAAGCGGTGGCCGTATTGACG
AAATCTCCGTTGCTTCTGGTTCTCAGCATCGAGAAGAACCTCGATCCGAC
GATCTTGTTCTTCCGAAAAGAAATGAACGCGTCCGAGGAGGACATTAGAA
ATTCATTGGGGCAGAACCCGCTGCTGATGACGTACAGCTTGAAAATGCGA
TTTCACCCGCGCGTTGCGGCCTTGAGGGCGGCTGGCGTAGAGCCCGTTTT
CTCAGAGCACCACTTGCAGGTCATCCTGTTCACAACCACTAAGTTTGATG
CCTTCCTGCACAGTGTCCGACAAGCGAAGTAG