prot_S-dermatodea_contig1177.1119.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1177.1119.1
Unique Nameprot_S-dermatodea_contig1177.1119.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length111
Homology
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BLAST of mRNA_S-dermatodea_contig1177.1119.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 6.170e-45
Identity = 74/100 (74.00%), Postives = 86/100 (86.00%), Query Frame = 0 
Query:   10 LRAAVRRPATPIAA-ARRNMSGDAAHAAEEMAKWKKMTGGMGVLCVIVTAFVVATEEHHHKDEDAPVLSHMEIRSKPFPWTCAKCSILDSACFAKCKEER 108
            +RAAVRRPA   A+ ARR+MSGDAAHAAEEMAKWKKMT GMGVL + VT  V+ATEEHHH+DEDAP+ S+M+IR+KP PW CA C++LDSACFAKCK ER
Sbjct:    6 VRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAER 105
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BLAST of mRNA_S-dermatodea_contig1177.1119.1 vs. uniprot
Match: A0A7S3ZZW1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZW1_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.190e-16
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 0 
Query:   12 AAVRRPATPIAAARRNMSGDAAHAAEEMAKWKKMTGGMGVLCVIVTAFVVATEEHH----HKDEDAPVLSHMEIRSKPFPWTCAKCSILDSACFAKCK 105
            A +RR A P+   RR MSGDAA AA EMAKW K + G    C +++ ++   E  H    H+ ED    SHM+IR+KP+PW C  C++ ++ CF  CK
Sbjct:   10 ALLRRGAAPLG--RRMMSGDAAEAAIEMAKWTKYSYGAIAFCGVLSTYIGIVEYRHMMHPHEHEDI-AYSHMKIRAKPYPWDCPDCNLFEAQCFRDCK 104
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1177.1119.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHU0_ECTSI6.170e-4574.00Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
A0A7S3ZZW1_9STRA1.190e-1643.88Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036418Cytochrome c oxidase, subunit VIa superfamilyGENE3D4.10.95.10coord: 28..95
e-value: 1.5E-10
score: 42.9
IPR036418Cytochrome c oxidase, subunit VIa superfamilySUPERFAMILY81411Mitochondrial cytochrome c oxidase subunit VIacoord: 30..88
NoneNo IPR availablePANTHERPTHR11504:SF0CYTOCHROME C OXIDASE SUBUNIT 6A, MITOCHONDRIALcoord: 7..106
IPR001349Cytochrome c oxidase, subunit VIaPANTHERPTHR11504CYTOCHROME C OXIDASE POLYPEPTIDE VIAcoord: 7..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1177contigS-dermatodea_contig1177:13989..18511 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1177.1119.1mRNA_S-dermatodea_contig1177.1119.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1177 13923..18514 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1177.1119.1 ID=prot_S-dermatodea_contig1177.1119.1|Name=mRNA_S-dermatodea_contig1177.1119.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
MYSTLAKTALRAAVRRPATPIAAARRNMSGDAAHAAEEMAKWKKMTGGMG
VLCVIVTAFVVATEEHHHKDEDAPVLSHMEIRSKPFPWTCAKCSILDSAC
FAKCKEERGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036418Cyt_c_oxidase_su6a_sf
IPR001349Cyt_c_oxidase_su6a