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Homology
BLAST of mRNA_S-dermatodea_contig1177.1119.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI) HSP 1 Score: 150 bits (380), Expect = 7.520e-45 Identity = 74/100 (74.00%), Postives = 86/100 (86.00%), Query Frame = 1
Query: 94 LRAAVRRPATPIAA-ARRNMSGDAAHAAEEMAKWKKMTGGMGVLCVIVTAFVVATEEHHHKDEDAPVLSHMEIRSKPFPWTCAKCSILDSACFAKCKEER 390
+RAAVRRPA A+ ARR+MSGDAAHAAEEMAKWKKMT GMGVL + VT V+ATEEHHH+DEDAP+ S+M+IR+KP PW CA C++LDSACFAKCK ER
Sbjct: 6 VRAAVRRPAAAAASSARRSMSGDAAHAAEEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAER 105
BLAST of mRNA_S-dermatodea_contig1177.1119.1 vs. uniprot
Match: A0A7S3ZZW1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZW1_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.290e-16 Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 1
Query: 100 AAVRRPATPIAAARRNMSGDAAHAAEEMAKWKKMTGGMGVLCVIVTAFVVATEEHH----HKDEDAPVLSHMEIRSKPFPWTCAKCSILDSACFAKCK 381
A +RR A P+ RR MSGDAA AA EMAKW K + G C +++ ++ E H H+ ED SHM+IR+KP+PW C C++ ++ CF CK
Sbjct: 10 ALLRRGAAPLG--RRMMSGDAAEAAIEMAKWTKYSYGAIAFCGVLSTYIGIVEYRHMMHPHEHEDI-AYSHMKIRAKPYPWDCPDCNLFEAQCFRDCK 104
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 151.0 |
| Seed ortholog evalue | 3.3e-34 |
| Seed eggNOG ortholog | 2880.D7FHU0 |
| KEGG ko | ko:K02266 |
| KEGG TC | 3.D.4.11,3.D.4.8 |
| KEGG Pathway | ko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016 |
| KEGG Module | M00154 |
| EggNOG OGs | 2BY4U@1,2SBT1@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002 |
| Hectar predicted targeting category | mitochondrion |
| Ec32 ortholog description | cytochrome c oxidase subunit VIa |
| Ec32 ortholog | Ec-07_006760.1 |
| Exons | 4 |
| Model size | 402 |
| Cds size | 333 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1177.1119.1 >prot_S-dermatodea_contig1177.1119.1 ID=prot_S-dermatodea_contig1177.1119.1|Name=mRNA_S-dermatodea_contig1177.1119.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
MYSTLAKTALRAAVRRPATPIAAARRNMSGDAAHAAEEMAKWKKMTGGMG
VLCVIVTAFVVATEEHHHKDEDAPVLSHMEIRSKPFPWTCAKCSILDSAC
FAKCKEERGL* back to topmRNA from alignment at S-dermatodea_contig1177:13923..18514+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig1177.1119.1 ID=mRNA_S-dermatodea_contig1177.1119.1|Name=mRNA_S-dermatodea_contig1177.1119.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4592bp|location=Sequence derived from alignment at S-dermatodea_contig1177:13923..18514+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTTCTTGGTGTTGTCGTTCAACGCGCTGGCCTGGAGCCGAAGTGGTGCA
CGTGCCTTTCACAAATATGGTGAGTTTAGGGTAGGAAGCCCCAGGTCACG
ACCCCTGCCGGAAATGCGGGAGTCGAAACGCACGGGCGCTAATGTTGCCG
CTCGATTTACAGCACCTTTTATGCCCGATCTCTGAATCGTTCAGTCATTC
GCTTGTTCGCGTTGGTGCAGCCTCCGTGCTGCTGGATTTACCAATCCCGA
TCGAAGCTTGGCGGCGCCCAGCTAGTTGCTGGTTGTCGGTTGCAATCGCT
GTTGCTGATTAGCTTCGACGAGTCTTGTCTATCCAGTTTCTACAAAACCA
CGCTGAAAGAGCGACAGAACATCTTTATTTCGTGAGACGAGAGTCAGTGG
TGTCGCGGCCGAAGCCCCCCAGGTCTCCCCAGAGCCCAAGAAGCGCCACG
ATAGACTCGTCTTGCGTAGGTTGGGTGGTGTAGAGAGCCCTAACATAGAA
CCCAGCAACAGAGCTAGCGCTTAGGTGCTTTGGAGCTCCCGATGGTGTCG
CTGCTAGTGAAAGCTACTGGCGTGTGACGAGCGCTTATCACACTGCCCGT
GTCCCTTTTCTTTTTTGTGTTAGTACCTAATGTCAAATATCTGAAAGTTA
AAGCAGACTATGACAGCACATACACTAGAGCTCTAGTACTGCTGCTGTAT
AGTATTACTCCGGAGTATGATAGTACCGCTGTACCACTGCACATCCTGCA
CCACTGCTGTATTTACCTTGTTACGAGTACTTGTGTACGTACTGTATTGT
GCGTGGCCATTCTATCGTTGCAGTGCTTGCGGTAAGACGATTGAGGCAGC
CCCCCCTTGAGTCCACCGCCATCAACGACCGGAACTGTGCAAAACACAAA
CCTGTGTCGGACGTTTCGCTTCTTCGCACACCCCTCAATTTACACTTGAT
ATACTGTATAAAGTGTGTGATACACCCTCGGCGTGATGTGTGCGACACTG
CGGATGTACATCCAGTATGTGTGACAAGTCGTTTAACCCTTTTGGTACTT
TTTAACAAGAATTATATTAGTATTAATAGGGCTCTCTGAAACGACCATAA
ACTGTCTCTCGATGCCAGTCGACAGCTACAGCCCCGCTGCCCTTGGGCTC
CGTTCTCTGTCATTCCTGCGTCATAACCCATGGGGTTCCCCGGGATTCCC
CTTCAAGCACGCCTCATTACGTGCTAACCCGCGCTCCAAACAGTGGGCTA
GTACCACAAGGGTTAAGATTTTGGTGTTTCATACATCTGCTTAGCACCAC
CGCCGTAGATTGCCAAGTGCCCTTGCGCTCTTTAGGTCCCTGTACTCTGC
GTCCATCGCGGCTGCCCCCGTCTTGGAAGTCTTGACGCGGGCCTTGAGAT
TGGGTGCATTGCATTGTAGCGCTCCTTCGCTACTCGCGAGTCGCTGGCTC
GGTGCATGTGTGATCTTCCTGTATTCAGACAGATGGTGAGAGGCGCAAGA
GGTTAACAGAGTTGATGAGCACGTCCTGAGGCTCGGTTTGTGTTGAAGAT
GGTAAAAACTAAAAACCAAACCACGGAGCAAGCGTTGCGCACAGCACACA
TGACGAGGAAGCCCGACGACCGCGCCCAATGTTAAAGACTCGCGCCAAGG
GTCTCGAGAAGGGTAGCCGTGACACCTTGCGAATCGCTGTCTCAGACTGC
TGCGAACGCCGACCCGCCTTCCACCCTGTTTCCCATCCCTCGACCCTTCG
CTGCCCCTGCCCCCTCCACAGCCTCTTTTGTCACTCGTATTCGATGGGCA
TTTTCGTGTGAAGAGAGGTGCGGCCCGTTTCAAATGTTTTCCGAAATCAG
CACCACTATTTAGGTCCTGTGTTTGTGACTTTGCTGGAAATGCGTTCGTT
CGGGCTTATTTCTTCGTGCTCGCACTCTTGTCGCCGTAACAGTATTCAAC
GCTTGCTAAGACGGCGTTGAGAGCGGCCGTGCGCCGGCCGGCGACGCCAA
TCGCTGCCGCTCGCCGGAACATGTCTGGGGACGCCGCCCACGCAGCCGGT
GAGATTGAGCTTAAGCTTTGACGGTGGCCGCTGGTTAGAGCCTGATTTCA
ACGGTATACGCTTACTGTACCTACTCTAGTTTTTTTTGTGTTTTTGCGGT
TTAGCGACAGCGATTCTTGATGCGCAAAAGGCGTGGAATCAGTATGATAC
TGGAACTACTGTGGAGATTCTTCGGTGCCTGCGGGAAGTATCAAGTGTGC
AAATCTTGGTTTTCTGCTGCAACAATGCAAGAGCTTGCGTATGAAAGTAG
TATGCGACTCGCATGTTAGTGTGCCGAAGTGATCGCTTGCGACCGGTGCT
GACCTGTTATCTGAAGACGGTACGATCGATTGCCCATGGACGGGTAAAGG
AAAGAAGGGCATAGACGAAGAACATTTAGCTCAGACGATGGCAGCTGTTG
CTTGAGCTCGTTCGGGCCGGCCTCTCTTCATGACGTAGGCATGTCGCAGT
CATCCCTGTGGCTCATTTTGCAGACAATCATTGTTGTTGGATGAAGGAAG
CGAATCTGCAGGGCTGACGGGACACCTAAGAAAGGCGGTTTCGTTGAAGC
AACAAGTCCAACACAACGGGCTCAGGTCAACTTTCCGACGACTCTGTGAT
GCGTTGCCTCAGCGTAGTTTGTCATTCTTGCCAGAATACGGTGTGTGAAG
TCTCGTAACTCACTGCCCGGAAACAGAGATCCCTGTTCCTCCCAGCAACG
AGTCGTGCAACGCATGTGTCCCATGCGCAGGGTTACAGAGTCCCTGAAGA
GCCCCAATGTGTGAAATATGTTTATTTCTGATTTGTCCGCCTAAAACTTT
GAACATGTCTAAATACTTCAACTTTTCCAACCATTTTTTTTTCGCATTTC
CTTCCCCACCCCCCATCCCCGCCCCCCCCCTTTTTGCGTAATTTACGTTG
TTTTTCAAATTCCGTCGATGGGCCTTCTTGCTGGGGCTATCAGAGGAGAT
GGCAAAGTGGAAGAAGATGACGGGGGGGATGGGTGTGCTGTGCGTTATCG
TGACGGCTTTCGTTGTCGCCACCGAGGAGCACCACCACAAGGATGAGGAC
GCGCCGGTGGTGAGCAGTGACAAATTGGCCCCGTTCGTCTCTTTTTTGCT
CGTCGCGGGAGGGAAAGGCGGCGTAGTGGCACGTGTGGCGGCATGCCGGG
GGCGACCCGAGGGCGCCGCGTTTAAACAACCCTCGTGGATGCCAACCATC
CATTCAAGAGCTTGCAATACGTTGTATTCTTGCGTGTTTGGTGTTTTACT
GATCATTTTTGCCAGAGCCGTTGTTTGTTTTGACTTGCGTAGAGAGGGCG
CGCTGTTAGGGGAGGGGGGGGGAGGGGGGGGGGGGGTCACGCGCGTGTAT
GGGCTAGAAGTAAGGACGGGCAGAATAGGCAACGGATGCGCAAATAAGGG
TGGGTAGGGTAGTACAGGCTCGAATACATGGTGACAAAATCTCACAAGTA
AAAACAACCCATTCCCAGAGTTAAATGTTAATTGTAATGTGACACGATAG
CATATTATATAATGTAGGCTTCCACTGAGTTAGATTGGGCCATCTTTTTC
CTCTACCAAAAATCTTAGACCCCACTGCTATGTAGTTATGTGTTATAAAT
CGTTACTGTCTTCGAGGGGGTCGGAATACGGTAGGACCCCATAAAATCAT
ACATAACGTAGACCTCCACTGAGTTATCACAGCTTGCCTTCCTTTTCTCT
CTTTCAAAATGTTGGAACCCAATGCTCGCTCTGCGTTTTAGCATTATTTT
CTTGCTTCAGGGGGGATGGGATGTTGGAAATGTCTCATTCCGTGTTACTC
GTTTAGCTTTAATGTGGGGTTGGAGGATAAACCCGAAGTTTAGACGCTGC
TGTTCTTGCTGCAAAGTTGACCATCCACGGAAGGGATATGAAGCCAACAA
GAATCTGCCTGAAAGCCTCGCTCTATGATATCCCCCTTCCCCCTGTCTTC
GAGAGATGGCGGGGTGGCAAAACATGAGACACCGGACTTTAGAAGAGTCG
GGCCGTTGTCGGTGTCGGCGTATCGGCGTGTTGTTAAAAAAGATACGGAA
GACATGCAAACGCACACGCTGAAGTGTCAGCCTTTCAGCCAAACGGCCGC
CAGCATGACATCTGCAACCCCAAGCCCTTCTCGTGTATTTTTTTTGCAGC
GTAGCGTTCGTAAGCCATGCATCCTAACCCTAGCAACAGCTTTGATCCCG
CGCGTGCTTCGACAGCTGGTCGCTAAGCTGGAGACCTCAACGGTTTCACC
ACGGAGGCATTTGCGGGATGCCTTGCACCCTCTCCCCCTTCCCCGTTCTG
GAGTATTTTGGATCCGTCCTTTCTGTTCGGAAGGTGGCCCTGTTAACCCT
ACCCTCCCCGCGCCCCCACCCCCGCCTCGGCCCTGCCCCACACTCGTGCA
CTAAATCTCTGGGGTATATTGTCCTGTGCAGCTCTCGCACATGGAGATTC
GCAGTAAGCCTTTCCCGTGGACCTGCGCCAAGTGCTCCATCCTCGACAGC
GCCTGCTTCGCCAAGTGCAAGGAGGAGCGCGGACTGTAAAGC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig1177:13923..18514+ >mRNA_S-dermatodea_contig1177.1119.1 ID=mRNA_S-dermatodea_contig1177.1119.1|Name=mRNA_S-dermatodea_contig1177.1119.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig1177:13923..18514+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGTATTCAACGCTTGCTAAGACGGCGTTGAGAGCGGCCGTGCGCCG
GCCGGCGACGCCAATCGCTGCCGCTCGCCGGAACATGTCTGGGGACGCCG
CCCACGCAGCCGTATTCAACGCTTGCTAAGACGGCGTTGAGAGCGGCCGT
GCGCCGGCCGGCGACGCCAATCGCTGCCGCTCGCCGGAACATGTCTGGGG
ACGCCGCCCACGCAGCCGAGGAGATGGCAAAGTGGAAGAAGATGACGGGG
GGGATGGGTGTGCTGTGCGTTATCGTGACGGCTTTCGTTGTCGCCACCGA
GGAGCACCACCACAAGGATGAGGACGCGCCGGTGAGGAGATGGCAAAGTG
GAAGAAGATGACGGGGGGGATGGGTGTGCTGTGCGTTATCGTGACGGCTT
TCGTTGTCGCCACCGAGGAGCACCACCACAAGGATGAGGACGCGCCGGTG
CTCTCGCACATGGAGATTCGCAGTAAGCCTTTCCCGTGGACCTGCGCCAA
GTGCTCCATCCTCGACAGCGCCTGCTTCGCCAAGTGCAAGGAGGAGCGCG
GACTGTAACTCTCGCACATGGAGATTCGCAGTAAGCCTTTCCCGTGGACC
TGCGCCAAGTGCTCCATCCTCGACAGCGCCTGCTTCGCCAAGTGCAAGGA
GGAGCGCGGACTGTAA back to top
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