prot_S-dermatodea_contig11685.1071.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11685.1071.1
Unique Nameprot_S-dermatodea_contig11685.1071.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length123
Homology
BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: D7FVX7_ECTSI (Proliferating cell nuclear antigen n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX7_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 2.630e-65
Identity = 97/122 (79.51%), Postives = 110/122 (90.16%), Query Frame = 0
Query:    1 MPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQEE 122
            MPSAEFARI++DL +IGDTC I C K+GV FSVSGD+G G+IMV+NN SVDKEE+KV VTM EP+TLKFALRYL LF KATPLGPTVTISMTPD+PVVVEYPIDTFGY+RYYLAPKID+ +E
Sbjct:  139 MPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLKFALRYLSLFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 260          
BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: A0A835YRT1_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT1_9STRA)

HSP 1 Score: 181 bits (458), Expect = 7.490e-55
Identity = 83/122 (68.03%), Postives = 100/122 (81.97%), Query Frame = 0
Query:    1 MPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQEE 122
            MPS +F RI++DL +IGDTC I  TKEGVRFSV GDLG G+I VK NP+ +KEEEKV V + EP++L FALRYL  FTKATPLGP V +SM+PD P+VVEYPIDT G++R+YLAPKID+ EE
Sbjct:  139 MPSTDFQRIIRDLQVIGDTCTISATKEGVRFSVEGDLGAGNIAVKQNPNAEKEEEKVEVHIEEPVSLTFALRYLNFFTKATPLGPIVALSMSPDVPIVVEYPIDTTGFVRFYLAPKIDEDEE 260          
BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: A0A812RGX4_SYMMI (Proliferating cell nuclear antigen n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RGX4_SYMMI)

HSP 1 Score: 179 bits (455), Expect = 2.130e-54
Identity = 79/119 (66.39%), Postives = 102/119 (85.71%), Query Frame = 0
Query:    1 MPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDD 119
            +PS+EF RI++DL ++GDTC I CTKEGVRFS SGDLGTG+I++K+N SVDK+E+ V++ M EP+ L FALRYL  FTKATPLGPTVT+S++PD P++VEYP+   GY+RYYLAPKID+
Sbjct:  140 LPSSEFQRIMRDLTVLGDTCTIACTKEGVRFSASGDLGTGNILLKHNASVDKDEDAVVIDMQEPVELLFALRYLNTFTKATPLGPTVTLSLSPDLPILVEYPVGDLGYVRYYLAPKIDE 258          
BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: B8BWU2_THAPS (Proliferating cell nuclear antigen n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWU2_THAPS)

HSP 1 Score: 178 bits (452), Expect = 6.230e-54
Identity = 81/122 (66.39%), Postives = 102/122 (83.61%), Query Frame = 0
Query:    1 MPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQEE 122
            MPSAEF RI++DL ++GDTC I CTKEGV+FSVSGDLG+G+++V+ N + +K+EEKVM+ M EP+ L FALRYL  FTKAT LGPTV +SM+P+ PVVVEYPI   G+I+YYLAPKID+ EE
Sbjct:  139 MPSAEFQRIIRDLQVLGDTCTISCTKEGVKFSVSGDLGSGNVLVRQNSAAEKDEEKVMIEMDEPVELTFALRYLNFFTKATSLGPTVILSMSPEVPVVVEYPIGETGHIKYYLAPKIDEDEE 260          
BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: M1FBH3_9STRA (PCNA (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=M1FBH3_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.430e-53
Identity = 80/121 (66.12%), Postives = 100/121 (82.64%), Query Frame = 0
Query:    1 MPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQE 121
            MPS EF RIV+D+ ++GDTC I  TKEGVRFSVSGDLGTG+++V++N   DKEEE+V++ M EP+ L FALRYL  FTKAT LGPTV ISM+P+ P+VVEYPI+  G+I+YYLAPKID+ E
Sbjct:   42 MPSGEFQRIVRDMQVLGDTCTISVTKEGVRFSVSGDLGTGNVLVRSNGVADKEEEQVLIDMDEPVELTFALRYLNFFTKATGLGPTVVISMSPEVPIVVEYPIEEVGHIKYYLAPKIDENE 162          
BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: A0A7S2EL74_TRICV (Proliferating cell nuclear antigen n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EL74_TRICV)

HSP 1 Score: 178 bits (451), Expect = 4.080e-53
Identity = 82/121 (67.77%), Postives = 100/121 (82.64%), Query Frame = 0
Query:    1 MPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQE 121
            MPSAEF RI++DL  +GDTC+I C KEGVRFSVSGDLGTG+++V++N S DK+EEKV++ M EP+ L FALRYL  FTKAT LGP V ISM+PD P+VVEYPI+  G I+YYLAPKID+ E
Sbjct:  195 MPSAEFQRIIRDLGSLGDTCNISCNKEGVRFSVSGDLGTGNVLVRSNASADKDEEKVLIDMEEPVELTFALRYLNFFTKATALGPQVVISMSPDVPIVVEYPIEGVGDIKYYLAPKIDENE 315          
BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: A0A7R9WGG0_9STRA (Proliferating cell nuclear antigen n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9WGG0_9STRA)

HSP 1 Score: 177 bits (448), Expect = 9.320e-53
Identity = 79/121 (65.29%), Postives = 102/121 (84.30%), Query Frame = 0
Query:    1 MPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQE 121
            MPS EF RIV+D+ ++GDTC I CTKEGVRFSVSGDLGTG+++++NN + +KEE++V++ M EP+ L FALRYL  FTKAT LGP+V ISM+PD P+VVEYPI++ G I+YYLAPKID+ E
Sbjct:  188 MPSTEFQRIVRDMQVLGDTCVISCTKEGVRFSVSGDLGTGNVLIRNNANAEKEEDQVLIDMEEPVELTFALRYLNFFTKATALGPSVIISMSPDVPIVVEYPIESSGEIKYYLAPKIDENE 308          
BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: A0A6V2BXY5_9STRA (Proliferating cell nuclear antigen n=7 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6V2BXY5_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.710e-52
Identity = 80/121 (66.12%), Postives = 100/121 (82.64%), Query Frame = 0
Query:    1 MPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQE 121
            MPS EF RIV+D+ ++GDTC I  TKEGVRFSVSGDLGTG+++V++N   DKEEE+V++ M EP+ L FALRYL  FTKAT LGPTV ISM+P+ P+VVEYPI+  G+I+YYLAPKID+ E
Sbjct:  139 MPSGEFQRIVRDMQVLGDTCTISVTKEGVRFSVSGDLGTGNVLVRSNGVADKEEEQVLIDMDEPVELTFALRYLNFFTKATGLGPTVVISMSPEVPIVVEYPIEEVGHIKYYLAPKIDENE 259          
BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: A0A835ZEE1_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE1_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.790e-52
Identity = 81/122 (66.39%), Postives = 99/122 (81.15%), Query Frame = 0
Query:    1 MPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQEE 122
            MPSAEF RI++DL++IGDTC I   K+GVRF V GDLG+GSI VK N + +KEEE+V V M EP+ L FALRYL  F KATPLGP V +SM+PD PVVVE+PI+T GY+R+YLAPKID++EE
Sbjct:  139 MPSAEFQRIIRDLSVIGDTCSIAVGKDGVRFGVEGDLGSGSISVKQNTAAEKEEERVEVHMEEPVELTFALRYLNFFAKATPLGPIVALSMSPDVPVVVEFPIETVGYLRFYLAPKIDEEEE 260          
BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: Q6Y858_SKECO (Proliferating cell nuclear antigen (Fragment) n=1 Tax=Skeletonema costatum TaxID=2843 RepID=Q6Y858_SKECO)

HSP 1 Score: 171 bits (432), Expect = 1.270e-51
Identity = 79/121 (65.29%), Postives = 98/121 (80.99%), Query Frame = 0
Query:    1 MPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQE 121
            MPS EF RI++D+ ++GDT  I CTKEGVRFSVSGDLGTG+++V+ N S +KEEE+VM+ M EP+ L FALRYL  FTKAT LG TV +SM+P+ PVVVEYPI   GYI+YYLAPKI++ E
Sbjct:   85 MPSGEFQRIIRDMQVLGDTATISCTKEGVRFSVSGDLGTGNVLVRQNSSHEKEEERVMIEMQEPVELTFALRYLNFFTKATSLGGTVILSMSPEVPVVVEYPIGETGYIKYYLAPKIEEDE 205          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVX7_ECTSI2.630e-6579.51Proliferating cell nuclear antigen n=2 Tax=Ectocar... [more]
A0A835YRT1_9STRA7.490e-5568.03Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
A0A812RGX4_SYMMI2.130e-5466.39Proliferating cell nuclear antigen n=1 Tax=Symbiod... [more]
B8BWU2_THAPS6.230e-5466.39Proliferating cell nuclear antigen n=1 Tax=Thalass... [more]
M1FBH3_9STRA1.430e-5366.12PCNA (Fragment) n=1 Tax=Ditylum brightwellii TaxID... [more]
A0A7S2EL74_TRICV4.080e-5367.77Proliferating cell nuclear antigen n=1 Tax=Trieres... [more]
A0A7R9WGG0_9STRA9.320e-5365.29Proliferating cell nuclear antigen n=2 Tax=Odontel... [more]
A0A6V2BXY5_9STRA2.710e-5266.12Proliferating cell nuclear antigen n=7 Tax=Lithode... [more]
A0A835ZEE1_9STRA2.790e-5266.39Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
Q6Y858_SKECO1.270e-5165.29Proliferating cell nuclear antigen (Fragment) n=1 ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000730Proliferating cell nuclear antigen, PCNAPRINTSPR00339PCNACYCLINcoord: 103..120
score: 56.08
coord: 65..79
score: 58.41
IPR000730Proliferating cell nuclear antigen, PCNATIGRFAMTIGR00590TIGR00590coord: 1..121
e-value: 1.1E-43
score: 147.6
IPR022649Proliferating cell nuclear antigen, PCNA, C-terminalPFAMPF02747PCNA_Ccoord: 1..116
e-value: 5.1E-43
score: 146.3
NoneNo IPR availableGENE3D3.10.150.10coord: 1..121
e-value: 3.4E-44
score: 151.9
NoneNo IPR availablePANTHERPTHR11352:SF8coord: 1..120
NoneNo IPR availablePANTHERPTHR11352PROLIFERATING CELL NUCLEAR ANTIGENcoord: 1..120
NoneNo IPR availableSUPERFAMILY55979DNA clampcoord: 1..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11685contigS-dermatodea_contig11685:2638..3825 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11685.1071.1mRNA_S-dermatodea_contig11685.1071.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11685 2635..3825 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11685.1071.1 ID=prot_S-dermatodea_contig11685.1071.1|Name=mRNA_S-dermatodea_contig11685.1071.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=123bp
MPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSV
DKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVE
YPIDTFGYIRYYLAPKIDDQEE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000730Pr_cel_nuc_antig
IPR022649Pr_cel_nuc_antig_C