mRNA_S-dermatodea_contig11685.1071.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11685.1071.1
Unique NamemRNA_S-dermatodea_contig11685.1071.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: D7FVX7_ECTSI (Proliferating cell nuclear antigen n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX7_ECTSI)

HSP 1 Score: 209 bits (532), Expect = 4.780e-66
Identity = 98/123 (79.67%), Postives = 111/123 (90.24%), Query Frame = 1 
Query:    1 QMPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQEE 369
            QMPSAEFARI++DL +IGDTC I C K+GV FSVSGD+G G+IMV+NN SVDKEE+KV VTM EP+TLKFALRYL LF KATPLGPTVTISMTPD+PVVVEYPIDTFGY+RYYLAPKID+ +E
Sbjct:  138 QMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEEDKVTVTMEEPVTLKFALRYLSLFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDEADE 260
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BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: A0A835YRT1_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRT1_9STRA)

HSP 1 Score: 181 bits (459), Expect = 5.500e-55
Identity = 83/123 (67.48%), Postives = 101/123 (82.11%), Query Frame = 1 
Query:    1 QMPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQEE 369
            +MPS +F RI++DL +IGDTC I  TKEGVRFSV GDLG G+I VK NP+ +KEEEKV V + EP++L FALRYL  FTKATPLGP V +SM+PD P+VVEYPIDT G++R+YLAPKID+ EE
Sbjct:  138 RMPSTDFQRIIRDLQVIGDTCTISATKEGVRFSVEGDLGAGNIAVKQNPNAEKEEEKVEVHIEEPVSLTFALRYLNFFTKATPLGPIVALSMSPDVPIVVEYPIDTTGFVRFYLAPKIDEDEE 260
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BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: B8BWU2_THAPS (Proliferating cell nuclear antigen n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWU2_THAPS)

HSP 1 Score: 180 bits (457), Expect = 1.140e-54
Identity = 82/123 (66.67%), Postives = 103/123 (83.74%), Query Frame = 1 
Query:    1 QMPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQEE 369
            QMPSAEF RI++DL ++GDTC I CTKEGV+FSVSGDLG+G+++V+ N + +K+EEKVM+ M EP+ L FALRYL  FTKAT LGPTV +SM+P+ PVVVEYPI   G+I+YYLAPKID+ EE
Sbjct:  138 QMPSAEFQRIIRDLQVLGDTCTISCTKEGVKFSVSGDLGSGNVLVRQNSAAEKDEEKVMIEMDEPVELTFALRYLNFFTKATSLGPTVILSMSPEVPVVVEYPIGETGHIKYYLAPKIDEDEE 260
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BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: A0A812RGX4_SYMMI (Proliferating cell nuclear antigen n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RGX4_SYMMI)

HSP 1 Score: 180 bits (456), Expect = 1.560e-54
Identity = 79/120 (65.83%), Postives = 103/120 (85.83%), Query Frame = 1 
Query:    1 QMPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDD 360
            ++PS+EF RI++DL ++GDTC I CTKEGVRFS SGDLGTG+I++K+N SVDK+E+ V++ M EP+ L FALRYL  FTKATPLGPTVT+S++PD P++VEYP+   GY+RYYLAPKID+
Sbjct:  139 RLPSSEFQRIMRDLTVLGDTCTIACTKEGVRFSASGDLGTGNILLKHNASVDKDEDAVVIDMQEPVELLFALRYLNTFTKATPLGPTVTLSLSPDLPILVEYPVGDLGYVRYYLAPKIDE 258
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BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: A0A7S2EL74_TRICV (Proliferating cell nuclear antigen n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EL74_TRICV)

HSP 1 Score: 180 bits (456), Expect = 7.510e-54
Identity = 83/122 (68.03%), Postives = 101/122 (82.79%), Query Frame = 1 
Query:    1 QMPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQE 366
            QMPSAEF RI++DL  +GDTC+I C KEGVRFSVSGDLGTG+++V++N S DK+EEKV++ M EP+ L FALRYL  FTKAT LGP V ISM+PD P+VVEYPI+  G I+YYLAPKID+ E
Sbjct:  194 QMPSAEFQRIIRDLGSLGDTCNISCNKEGVRFSVSGDLGTGNVLVRSNASADKDEEKVLIDMEEPVELTFALRYLNFFTKATALGPQVVISMSPDVPIVVEYPIEGVGDIKYYLAPKIDENE 315
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BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: M1FBH3_9STRA (PCNA (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=M1FBH3_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.050e-53
Identity = 80/122 (65.57%), Postives = 101/122 (82.79%), Query Frame = 1 
Query:    1 QMPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQE 366
            +MPS EF RIV+D+ ++GDTC I  TKEGVRFSVSGDLGTG+++V++N   DKEEE+V++ M EP+ L FALRYL  FTKAT LGPTV ISM+P+ P+VVEYPI+  G+I+YYLAPKID+ E
Sbjct:   41 KMPSGEFQRIVRDMQVLGDTCTISVTKEGVRFSVSGDLGTGNVLVRSNGVADKEEEQVLIDMDEPVELTFALRYLNFFTKATGLGPTVVISMSPEVPIVVEYPIEEVGHIKYYLAPKIDENE 162
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BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: A0A7R9WGG0_9STRA (Proliferating cell nuclear antigen n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7R9WGG0_9STRA)

HSP 1 Score: 177 bits (449), Expect = 6.860e-53
Identity = 79/122 (64.75%), Postives = 103/122 (84.43%), Query Frame = 1 
Query:    1 QMPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQE 366
            +MPS EF RIV+D+ ++GDTC I CTKEGVRFSVSGDLGTG+++++NN + +KEE++V++ M EP+ L FALRYL  FTKAT LGP+V ISM+PD P+VVEYPI++ G I+YYLAPKID+ E
Sbjct:  187 KMPSTEFQRIVRDMQVLGDTCVISCTKEGVRFSVSGDLGTGNVLIRNNANAEKEEDQVLIDMEEPVELTFALRYLNFFTKATALGPSVIISMSPDVPIVVEYPIESSGEIKYYLAPKIDENE 308
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BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: A0A6V2BXY5_9STRA (Proliferating cell nuclear antigen n=7 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6V2BXY5_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.990e-52
Identity = 80/122 (65.57%), Postives = 101/122 (82.79%), Query Frame = 1 
Query:    1 QMPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQE 366
            +MPS EF RIV+D+ ++GDTC I  TKEGVRFSVSGDLGTG+++V++N   DKEEE+V++ M EP+ L FALRYL  FTKAT LGPTV ISM+P+ P+VVEYPI+  G+I+YYLAPKID+ E
Sbjct:  138 KMPSGEFQRIVRDMQVLGDTCTISVTKEGVRFSVSGDLGTGNVLVRSNGVADKEEEQVLIDMDEPVELTFALRYLNFFTKATGLGPTVVISMSPEVPIVVEYPIEEVGHIKYYLAPKIDENE 259
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BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: A0A835ZEE1_9STRA (Proliferating cell nuclear antigen n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE1_9STRA)

HSP 1 Score: 174 bits (442), Expect = 2.050e-52
Identity = 81/123 (65.85%), Postives = 100/123 (81.30%), Query Frame = 1 
Query:    1 QMPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQEE 369
            +MPSAEF RI++DL++IGDTC I   K+GVRF V GDLG+GSI VK N + +KEEE+V V M EP+ L FALRYL  F KATPLGP V +SM+PD PVVVE+PI+T GY+R+YLAPKID++EE
Sbjct:  138 RMPSAEFQRIIRDLSVIGDTCSIAVGKDGVRFGVEGDLGSGSISVKQNTAAEKEEERVEVHMEEPVELTFALRYLNFFAKATPLGPIVALSMSPDVPVVVEFPIETVGYLRFYLAPKIDEEEE 260
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BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Match: Q6Y858_SKECO (Proliferating cell nuclear antigen (Fragment) n=1 Tax=Skeletonema costatum TaxID=2843 RepID=Q6Y858_SKECO)

HSP 1 Score: 172 bits (437), Expect = 2.300e-52
Identity = 80/122 (65.57%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:    1 QMPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSVDKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVEYPIDTFGYIRYYLAPKIDDQE 366
            QMPS EF RI++D+ ++GDT  I CTKEGVRFSVSGDLGTG+++V+ N S +KEEE+VM+ M EP+ L FALRYL  FTKAT LG TV +SM+P+ PVVVEYPI   GYI+YYLAPKI++ E
Sbjct:   84 QMPSGEFQRIIRDMQVLGDTATISCTKEGVRFSVSGDLGTGNVLVRQNSSHEKEEERVMIEMQEPVELTFALRYLNFFTKATSLGGTVILSMSPEVPVVVEYPIGETGYIKYYLAPKIEEDE 205
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11685.1071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVX7_ECTSI4.780e-6679.67Proliferating cell nuclear antigen n=2 Tax=Ectocar... [more]
A0A835YRT1_9STRA5.500e-5567.48Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
B8BWU2_THAPS1.140e-5466.67Proliferating cell nuclear antigen n=1 Tax=Thalass... [more]
A0A812RGX4_SYMMI1.560e-5465.83Proliferating cell nuclear antigen n=1 Tax=Symbiod... [more]
A0A7S2EL74_TRICV7.510e-5468.03Proliferating cell nuclear antigen n=1 Tax=Trieres... [more]
M1FBH3_9STRA1.050e-5365.57PCNA (Fragment) n=1 Tax=Ditylum brightwellii TaxID... [more]
A0A7R9WGG0_9STRA6.860e-5364.75Proliferating cell nuclear antigen n=2 Tax=Odontel... [more]
A0A6V2BXY5_9STRA1.990e-5265.57Proliferating cell nuclear antigen n=7 Tax=Lithode... [more]
A0A835ZEE1_9STRA2.050e-5265.85Proliferating cell nuclear antigen n=1 Tax=Tribone... [more]
Q6Y858_SKECO2.300e-5265.57Proliferating cell nuclear antigen (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11685contigS-dermatodea_contig11685:2635..3825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue1.9e-51
Seed eggNOG ortholog2880.D7FVX7
Preferred namePCNA
KEGG koko:K04802
KEGG Pathwayko03030,ko03410,ko03420,ko03430,ko04110,ko04530,ko05161,ko05166,map03030,map03410,map03420,map03430,map04110,map04530,map05161,map05166
KEGG ModuleM00295
GOsGO:0000003,GO:0000075,GO:0000077,GO:0000082,GO:0000083,GO:0000122,GO:0000226,GO:0000228,GO:0000278,GO:0000302,GO:0000307,GO:0000700,GO:0000701,GO:0000723,GO:0000731,GO:0001101,GO:0001889,GO:0002064,GO:0002065,GO:0002066,GO:0002376,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003684,GO:0003690,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005657,GO:0005663,GO:0005694,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006275,GO:0006277,GO:0006281,GO:0006282,GO:0006283,GO:0006284,GO:0006287,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006355,GO:0006357,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006955,GO:0006959,GO:0006974,GO:0006977,GO:0006979,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007507,GO:0007584,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009314,GO:0009410,GO:0009411,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010927,GO:0010948,GO:0014070,GO:0014823,GO:0015630,GO:0016043,GO:0016070,GO:0016567,GO:0016604,GO:0016787,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019730,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0019985,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022616,GO:0023052,GO:0030154,GO:0030234,GO:0030330,GO:0030331,GO:0030337,GO:0030703,GO:0030707,GO:0030855,GO:0030894,GO:0030971,GO:0030983,GO:0031099,GO:0031100,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031570,GO:0031571,GO:0031667,GO:0031960,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032075,GO:0032077,GO:0032135,GO:0032139,GO:0032200,GO:0032201,GO:0032355,GO:0032404,GO:0032405,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033683,GO:0033993,GO:0034399,GO:0034599,GO:0034614,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035035,GO:0035257,GO:0035258,GO:0035556,GO:0035690,GO:0036211,GO:0042221,GO:0042276,GO:0042493,GO:0042542,GO:0042592,GO:0042698,GO:0042769,GO:0042770,GO:0042802,GO:0043085,GO:0043170,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043596,GO:0043626,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044773,GO:0044774,GO:0044783,GO:0044786,GO:0044796,GO:0044819,GO:0044843,GO:0044849,GO:0044877,GO:0045005,GO:0045739,GO:0045740,GO:0045786,GO:0045787,GO:0045892,GO:0045930,GO:0045934,GO:0045935,GO:0046483,GO:0046677,GO:0046686,GO:0048468,GO:0048477,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051259,GO:0051260,GO:0051276,GO:0051336,GO:0051345,GO:0051384,GO:0051427,GO:0051606,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0060429,GO:0061008,GO:0061695,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070182,GO:0070206,GO:0070207,GO:0070301,GO:0070557,GO:0070647,GO:0070887,GO:0070987,GO:0071156,GO:0071158,GO:0071214,GO:0071236,GO:0071466,GO:0071478,GO:0071482,GO:0071548,GO:0071704,GO:0071840,GO:0071897,GO:0072331,GO:0072359,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090304,GO:0090305,GO:0097159,GO:0097237,GO:0097327,GO:0097421,GO:0098772,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901654,GO:1901698,GO:1901700,GO:1901701,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902065,GO:1902400,GO:1902402,GO:1902403,GO:1902494,GO:1902554,GO:1902679,GO:1902806,GO:1902807,GO:1902850,GO:1902911,GO:1902990,GO:1903047,GO:1903506,GO:1903507,GO:1990234,GO:1990782,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001020,GO:2001022,GO:2001141
EggNOG free text desc.DNA polymerase processivity factor activity
EggNOG OGsCOG0592@1,KOG1636@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPCNA
Ec32 orthologEc-01_002530.1
Exons2
Model size372
Cds size369
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11685.1071.1prot_S-dermatodea_contig11685.1071.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11685 2638..3825 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.7288957-UTR-S-dermatodea_contig11685:2634..26371622924213.7288957-UTR-S-dermatodea_contig11685:2634..2637Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11685 2635..2637 +
1694079097.674136-UTR-S-dermatodea_contig11685:2634..26371694079097.674136-UTR-S-dermatodea_contig11685:2634..2637Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11685 2635..2637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924213.7412434-CDS-S-dermatodea_contig11685:2637..27991622924213.7412434-CDS-S-dermatodea_contig11685:2637..2799Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11685 2638..2799 +
1694079097.6839263-CDS-S-dermatodea_contig11685:2637..27991694079097.6839263-CDS-S-dermatodea_contig11685:2637..2799Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11685 2638..2799 +
1622924213.752557-CDS-S-dermatodea_contig11685:3618..38251622924213.752557-CDS-S-dermatodea_contig11685:3618..3825Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11685 3619..3825 +
1694079097.691366-CDS-S-dermatodea_contig11685:3618..38251694079097.691366-CDS-S-dermatodea_contig11685:3618..3825Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11685 3619..3825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11685.1071.1

>prot_S-dermatodea_contig11685.1071.1 ID=prot_S-dermatodea_contig11685.1071.1|Name=mRNA_S-dermatodea_contig11685.1071.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=123bp
MPSAEFARIVKDLAIIGDTCDIECTKEGVRFSVSGDLGTGSIMVKNNPSV
DKEEEKVMVTMAEPLTLKFALRYLGLFTKATPLGPTVTISMTPDHPVVVE
YPIDTFGYIRYYLAPKIDDQEE*
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mRNA from alignment at S-dermatodea_contig11685:2635..3825+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11685.1071.1 ID=mRNA_S-dermatodea_contig11685.1071.1|Name=mRNA_S-dermatodea_contig11685.1071.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1191bp|location=Sequence derived from alignment at S-dermatodea_contig11685:2635..3825+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGATGCCGTCGGCGGAGTTCGCGCGCATCGTTAAGGACCTAGCGATCAT
CGGGGACACCTGCGATATCGAGTGCACGAAGGAGGGGGTCAGGTTTTCTG
TGTCAGGGGATCTCGGAACGGGTAGCATCATGGTCAAAAACAACCCGTCG
GTGGATAAGGAGGAGGTAAATGGAAAGCGCAGCCCGTTGGTTCTTTGGCG
TTGGTGTGATGTGTGTGTGTGCCGCGTGGATATCGGCCGTCTCTCGCCTT
CCCCGCCGGCGAGTTTTGCTTGGGCGGGGGCTCCGGTTTATATATGTATC
GGCAGCAGCCGACAGGAATGCCGTATTTATATTTCGTCGGAATGGACGAG
TACAGAATGGTTTTCGTGCCTTGGTTCTCATGTCATGGTTGTCGTAGAGG
GGAGATTTTGTGCACGAGAGGGTAGGGTATCTGACCACAAGTCGGGTCGG
ATTAAGCCGATCGGCTATACGTGTGCAAATCAATCAATCAATCAATCAAT
CAAGGGGCGGGGGCAACGAACGGCGTTCCCCTCCACATGTGCAGTATAGT
TATGATCGAGGTAAAAGAACCGGGCGCCAACGGCTTGGGTCCTCCCGCGG
ACCAAAACAAAGCCGAGCGAGTTTATCCTCAGTACATAGTACTTTTAATA
CAGAGAGAACTATAATATTAACATAGAGAGGTAATCACGCCTCAGGACGG
GAACTTCTTTACACGGACCGTGTGTCGAATACGAGTGCGAGAGGTGTTGT
TTTTTGTTATTTCCTGTATCCGATACAAGTGCTTGGCGTAAACGAACCAT
GGCCAAATCGAATAAATCCTTGTGCAAGTTTGGTGGCGACCTTCGGAAGA
AGGAACCACTCTTATGCTGGCTCCATGTCATGCCCCGCGATTCTCTTTAC
CCCCCTAACCCCTCCCCCCCACCTCCGTCCTCCCTCCCTCCCGTCGTCTG
TCTCCATCCGATTTGTTTTTCGCGATATGATCAGGAGAAGGTTATGGTAA
CAATGGCGGAACCCCTCACCCTCAAGTTCGCGCTCCGGTACCTTGGTCTC
TTCACGAAGGCGACCCCGTTGGGGCCCACGGTAACGATCTCCATGACGCC
GGACCATCCGGTCGTGGTCGAGTACCCTATCGATACCTTCGGCTACATTC
GATACTACCTCGCACCCAAGATCGATGACCAGGAAGAGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11685:2635..3825+

>mRNA_S-dermatodea_contig11685.1071.1 ID=mRNA_S-dermatodea_contig11685.1071.1|Name=mRNA_S-dermatodea_contig11685.1071.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at S-dermatodea_contig11685:2635..3825+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGTCGGCGGAGTTCGCGCGCATCGTTAAGGACCTAGCGATCATCGG
GGACACCTGCGATATCGAGTGCACGAAGGAGGGGGTCAGGTTTTCTGTGT
CAGGGGATCTCGGAACGGGTAGCATCATGGTCAAAAACAACCCGTCGGTG
GATAAGGAGGAGATGCCGTCGGCGGAGTTCGCGCGCATCGTTAAGGACCT
AGCGATCATCGGGGACACCTGCGATATCGAGTGCACGAAGGAGGGGGTCA
GGTTTTCTGTGTCAGGGGATCTCGGAACGGGTAGCATCATGGTCAAAAAC
AACCCGTCGGTGGATAAGGAGGAGGAGAAGGTTATGGTAACAATGGCGGA
ACCCCTCACCCTCAAGTTCGCGCTCCGGTACCTTGGTCTCTTCACGAAGG
CGACCCCGTTGGGGCCCACGGTAACGATCTCCATGACGCCGGACCATCCG
GTCGTGGTCGAGTACCCTATCGATACCTTCGGCTACATTCGATACTACCT
CGCACCCAAGATCGATGACCAGGAAGAGTAGGAGAAGGTTATGGTAACAA
TGGCGGAACCCCTCACCCTCAAGTTCGCGCTCCGGTACCTTGGTCTCTTC
ACGAAGGCGACCCCGTTGGGGCCCACGGTAACGATCTCCATGACGCCGGA
CCATCCGGTCGTGGTCGAGTACCCTATCGATACCTTCGGCTACATTCGAT
ACTACCTCGCACCCAAGATCGATGACCAGGAAGAGTAG
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