prot_S-dermatodea_contig1165.1054.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1165.1054.1
Unique Nameprot_S-dermatodea_contig1165.1054.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length150
Homology
BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 4.290e-94
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAESG 149
            MR DLDGLDVFFPY+FMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFA+PEVGKLIYCTRTVPEMMKCIEELKRVIGYR +QLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAE+G
Sbjct:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG 149          
BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A482RW16_9ARCH (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW16_9ARCH)

HSP 1 Score: 242 bits (618), Expect = 2.020e-77
Identity = 113/149 (75.84%), Postives = 130/149 (87.25%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAESG 149
            M+F+L+GL+VFFPY++MY EQYDYML LKR++DAKGH LLEMPTGTGKTVCLISLITSYQF  P+ GKLIYCTRTVPEM KC++E+K+VI YR + LGPEG +VLALCLSSRRN+CIH RV EESDRE VD  CRDMTASWVR  A+ G
Sbjct:   22 MKFNLEGLEVFFPYDYMYKEQYDYMLNLKRAIDAKGHALLEMPTGTGKTVCLISLITSYQFQYPQTGKLIYCTRTVPEMAKCMDEIKKVIEYRQKLLGPEGGRVLALCLSSRRNMCIHPRVQEESDRETVDTKCRDMTASWVRASAQKG 170          
BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 253 bits (647), Expect = 1.820e-76
Identity = 118/145 (81.38%), Postives = 136/145 (93.79%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKK 145
            +RFDLDGLD+FFPY+ +Y EQY+YMLELKR+LDAKGHCLLEMPTGTGKTVCLISLITSYQFA+PEVGKLIYCTRTVPEM+KC+EE+++VI YR + +G EG KVLA+CLSSRRNLCIHERV+EESDREAVD ACR MTASWVR++
Sbjct:    2 VRFDLDGLDLFFPYDRLYEEQYNYMLELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMVKCVEEVRKVIDYRVKCIGAEGGKVLAVCLSSRRNLCIHERVMEESDREAVDSACRSMTASWVRQR 146          
BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 246 bits (627), Expect = 7.370e-74
Identity = 114/146 (78.08%), Postives = 132/146 (90.41%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA 146
            M F L  + V+FPY++ YPEQY YM ELK +LDAKGHCLLEMPTGTGKTVCLI+LIT+YQ+ +PEVGKLIYCTRTVPEM+KC+EE+KRVI YR EQLGP G KVLALCLSSRRNLCIH+RV+E++DREAVDGACRDMTASWVR++A
Sbjct:    1 MIFTLGDITVWFPYDYCYPEQYAYMSELKTTLDAKGHCLLEMPTGTGKTVCLIALITAYQYQHPEVGKLIYCTRTVPEMVKCVEEIKRVIRYREEQLGPAGSKVLALCLSSRRNLCIHQRVLEDADREAVDGACRDMTASWVRQRA 146          
BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A7R9U4D1_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4D1_9STRA)

HSP 1 Score: 241 bits (615), Expect = 7.260e-72
Identity = 112/149 (75.17%), Postives = 131/149 (87.92%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAESG 149
            MRF L+ +DVFFPY  +Y EQ+DYM+ELKR+L+A GH  LEMPTGTGKTVCL+SLITS QFA PE+GK IYCTRTVPEM+KC+EELKRV+ YRAE +G EG K+LALCLSSRRN+CIH+RV+EESDREAVD ACR MTASWVRK+A+ G
Sbjct:   45 MRFRLEDVDVFFPYPSVYREQFDYMVELKRALEAPGHAALEMPTGTGKTVCLMSLITSVQFARPEMGKFIYCTRTVPEMVKCVEELKRVVNYRAECVGAEGRKILALCLSSRRNMCIHDRVLEESDREAVDAACRSMTASWVRKRAQEG 193          
BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A7S1CFN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFN5_9STRA)

HSP 1 Score: 216 bits (551), Expect = 1.340e-67
Identity = 106/155 (68.39%), Postives = 122/155 (78.71%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLD----------AKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKK 145
            M+F LDGL V+FPY ++Y EQ  YM ELKR+LD          AKGHC+LEMPTGTGKTV L+SLITSYQ A+P VGKL+YCTRTVPEM KC+ ELKRVI YR ++LGPEG  VLA CLSSRRN+CIHERV+ E+DRE VD ACR  TA WVR+K
Sbjct:    1 MKFLLDGLQVYFPYPYVYSEQLKYMRELKRALDVAFAPGVSTTAKGHCMLEMPTGTGKTVALLSLITSYQLAHPTVGKLMYCTRTVPEMTKCVGELKRVIEYRVKELGPEGGNVLACCLSSRRNMCIHERVMAEADREQVDAACRKRTAPWVREK 155          
BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A7S0S086_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S086_9CHLO)

HSP 1 Score: 215 bits (548), Expect = 2.380e-67
Identity = 100/148 (67.57%), Postives = 123/148 (83.11%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAES 148
            MRF L+GL V+FPYE++YPEQY YMLELKRSLDA+GH LLEMPTGTGKT+ L+SLITSYQ A+PEVGKL+YCTRTVPEM K + EL+ +I YR++ LGP+   ++AL LSSR+NLC+H  V EE  RE+VD  CR +TASWVR++A S
Sbjct:    1 MRFKLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHSLLEMPTGTGKTITLLSLITSYQLAHPEVGKLVYCTRTVPEMEKVLAELQELIAYRSKYLGPDAAPIMALGLSSRKNLCVHPTVAEEGSRESVDSGCRKLTASWVRERAVS 148          
BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A7R9TIP8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TIP8_9VIRI)

HSP 1 Score: 210 bits (535), Expect = 2.600e-67
Identity = 101/151 (66.89%), Postives = 122/151 (80.79%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIE--ESDREAVDGACRDMTASWVRKKAESG 149
            M+F+LDG+DV+FPY+++YPEQY+YMLELKR+LDAKGHCLLEMPTGTGKT+ L+SLITSYQ ANP VGKL+YCTRTVPEM K + ELK +   RA  LG   +  LAL LSSRRN+CI+E V+    +DRE+VD  CR +TASWVR  AE G
Sbjct:    1 MKFNLDGMDVYFPYDYIYPEQYEYMLELKRTLDAKGHCLLEMPTGTGKTITLLSLITSYQVANPGVGKLVYCTRTVPEMEKVMAELKHLHSMRAHDLGERAKNFLALVLSSRRNMCINESVLAGAATDRESVDSRCRRLTASWVRDSAEVG 151          
BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A835XSX7_9CHLO (Helicase ATP-binding domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XSX7_9CHLO)

HSP 1 Score: 211 bits (536), Expect = 5.820e-66
Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA 146
            M+F+L+GL V+FPYE++YPEQY YMLELKRSLDA+GHCLLEMPTGTGKT+ L+SLITSYQ A+ EVGKLIYCTRTVPEM K + EL  ++ YR++ L      +LAL LSSR+NLC+H RV EE  RE+VD  CR +TASWVR++A
Sbjct:    1 MKFNLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHCLLEMPTGTGKTITLLSLITSYQLAHKEVGKLIYCTRTVPEMEKVLSELSELVSYRSQHLPQGAGSILALGLSSRKNLCVHPRVAEEGSRESVDAGCRRLTASWVRERA 146          
BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: B8C2D9_THAPS (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2D9_THAPS)

HSP 1 Score: 218 bits (556), Expect = 2.730e-64
Identity = 105/147 (71.43%), Postives = 121/147 (82.31%), Query Frame = 0
Query:    1 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAE 147
            MRF+L+GLDVFFPY+ +Y EQY YM  LK++LDA GHCLLEMPTGTGKTVCL+SLITSYQ ANP  GKL+YCTRTVPEM   +EEL  V+ YR+EQLG  G  VLALCLSSRRN+CIHERV+ ESDRE +D ACR MTA W  +KA+
Sbjct:    1 MRFNLEGLDVFFPYDRIYLEQYQYMRALKQTLDAGGHCLLEMPTGTGKTVCLLSLITSYQLANPNCGKLVYCTRTVPEMNSVMEELGTVLAYRSEQLGA-GSGVLALCLSSRRNMCIHERVLRESDREGIDAACRSMTAPWAIEKAQ 146          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI4.290e-9495.97General transcription and DNA repair factor IIH he... [more]
A0A482RW16_9ARCH2.020e-7775.84Helicase ATP-binding domain-containing protein (Fr... [more]
K8YZX4_NANGC1.820e-7681.38General transcription and DNA repair factor IIH he... [more]
A0A836CJZ4_9STRA7.370e-7478.08General transcription and DNA repair factor IIH he... [more]
A0A7R9U4D1_9STRA7.260e-7275.17General transcription and DNA repair factor IIH he... [more]
A0A7S1CFN5_9STRA1.340e-6768.39Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0S086_9CHLO2.380e-6767.57Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7R9TIP8_9VIRI2.600e-6766.89Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A835XSX7_9CHLO5.820e-6667.12Helicase ATP-binding domain-containing protein n=1... [more]
B8C2D9_THAPS2.730e-6471.43General transcription and DNA repair factor IIH he... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006554Helicase-like, DEXD box c2 typeSMARTSM00488deadxpdcoord: 8..148
e-value: 3.4E-9
score: 4.2
IPR010614DEAD2PFAMPF06733DEAD_2coord: 71..145
e-value: 4.0E-16
score: 59.1
NoneNo IPR availableGENE3D3.40.50.300coord: 16..148
e-value: 1.5E-25
score: 91.8
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 3..147
IPR006935Helicase/UvrB, N-terminalPFAMPF04851ResIIIcoord: 19..63
e-value: 1.8E-5
score: 24.8
IPR001945RAD3/XPD familyPANTHERPTHR11472:SF1GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPDcoord: 3..147
IPR014013Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typePROSITEPS51193HELICASE_ATP_BIND_2coord: 7..149
score: 19.967
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 7..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1165contigS-dermatodea_contig1165:17695..22464 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1165.1054.1mRNA_S-dermatodea_contig1165.1054.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1165 17388..22464 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1165.1054.1 ID=prot_S-dermatodea_contig1165.1054.1|Name=mRNA_S-dermatodea_contig1165.1054.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=150bp
MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTV
CLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPE
GEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAESG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006554Helicase-like_DEXD_c2
IPR010614DEAD_2
IPR006935Helicase/UvrB_N
IPR001945RAD3/XPD
IPR014013Helic_SF1/SF2_ATP-bd_DinG/Rad3
IPR027417P-loop_NTPase