mRNA_S-dermatodea_contig1165.1054.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1165.1054.1
Unique NamemRNA_S-dermatodea_contig1165.1054.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 2.250e-93
Identity = 143/149 (95.97%), Postives = 147/149 (98.66%), Query Frame = 2 
Query:  308 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAESG 754
            MR DLDGLDVFFPY+FMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFA+PEVGKLIYCTRTVPEMMKCIEELKRVIGYR +QLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAE+G
Sbjct:    1 MRLDLDGLDVFFPYDFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAEAG 149
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BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A482RW16_9ARCH (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW16_9ARCH)

HSP 1 Score: 245 bits (625), Expect = 8.800e-77
Identity = 113/149 (75.84%), Postives = 130/149 (87.25%), Query Frame = 2 
Query:  308 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAESG 754
            M+F+L+GL+VFFPY++MY EQYDYML LKR++DAKGH LLEMPTGTGKTVCLISLITSYQF  P+ GKLIYCTRTVPEM KC++E+K+VI YR + LGPEG +VLALCLSSRRN+CIH RV EESDRE VD  CRDMTASWVR  A+ G
Sbjct:   22 MKFNLEGLEVFFPYDYMYKEQYDYMLNLKRAIDAKGHALLEMPTGTGKTVCLISLITSYQFQYPQTGKLIYCTRTVPEMAKCMDEIKKVIEYRQKLLGPEGGRVLALCLSSRRNMCIHPRVQEESDRETVDTKCRDMTASWVRASAQKG 170
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BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 256 bits (654), Expect = 9.310e-76
Identity = 118/145 (81.38%), Postives = 136/145 (93.79%), Query Frame = 2 
Query:  308 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKK 742
            +RFDLDGLD+FFPY+ +Y EQY+YMLELKR+LDAKGHCLLEMPTGTGKTVCLISLITSYQFA+PEVGKLIYCTRTVPEM+KC+EE+++VI YR + +G EG KVLA+CLSSRRNLCIHERV+EESDREAVD ACR MTASWVR++
Sbjct:    2 VRFDLDGLDLFFPYDRLYEEQYNYMLELKRALDAKGHCLLEMPTGTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMVKCVEEVRKVIDYRVKCIGAEGGKVLAVCLSSRRNLCIHERVMEESDREAVDSACRSMTASWVRQR 146
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BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 248 bits (634), Expect = 3.680e-73
Identity = 114/146 (78.08%), Postives = 132/146 (90.41%), Query Frame = 2 
Query:  308 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA 745
            M F L  + V+FPY++ YPEQY YM ELK +LDAKGHCLLEMPTGTGKTVCLI+LIT+YQ+ +PEVGKLIYCTRTVPEM+KC+EE+KRVI YR EQLGP G KVLALCLSSRRNLCIH+RV+E++DREAVDGACRDMTASWVR++A
Sbjct:    1 MIFTLGDITVWFPYDYCYPEQYAYMSELKTTLDAKGHCLLEMPTGTGKTVCLIALITAYQYQHPEVGKLIYCTRTVPEMVKCVEEIKRVIRYREEQLGPAGSKVLALCLSSRRNLCIHQRVLEDADREAVDGACRDMTASWVRQRA 146
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BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A7R9U4D1_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4D1_9STRA)

HSP 1 Score: 246 bits (628), Expect = 5.160e-72
Identity = 113/152 (74.34%), Postives = 133/152 (87.50%), Query Frame = 2 
Query:  299 EATMRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAESG 754
            +A MRF L+ +DVFFPY  +Y EQ+DYM+ELKR+L+A GH  LEMPTGTGKTVCL+SLITS QFA PE+GK IYCTRTVPEM+KC+EELKRV+ YRAE +G EG K+LALCLSSRRN+CIH+RV+EESDREAVD ACR MTASWVRK+A+ G
Sbjct:   42 DAAMRFRLEDVDVFFPYPSVYREQFDYMVELKRALEAPGHAALEMPTGTGKTVCLMSLITSVQFARPEMGKFIYCTRTVPEMVKCVEELKRVVNYRAECVGAEGRKILALCLSSRRNMCIHDRVLEESDREAVDAACRSMTASWVRKRAQEG 193
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BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A7S1CFN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFN5_9STRA)

HSP 1 Score: 219 bits (558), Expect = 5.420e-67
Identity = 106/155 (68.39%), Postives = 122/155 (78.71%), Query Frame = 2 
Query:  308 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLD----------AKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKK 742
            M+F LDGL V+FPY ++Y EQ  YM ELKR+LD          AKGHC+LEMPTGTGKTV L+SLITSYQ A+P VGKL+YCTRTVPEM KC+ ELKRVI YR ++LGPEG  VLA CLSSRRN+CIHERV+ E+DRE VD ACR  TA WVR+K
Sbjct:    1 MKFLLDGLQVYFPYPYVYSEQLKYMRELKRALDVAFAPGVSTTAKGHCMLEMPTGTGKTVALLSLITSYQLAHPTVGKLMYCTRTVPEMTKCVGELKRVIEYRVKELGPEGGNVLACCLSSRRNMCIHERVMAEADREQVDAACRKRTAPWVREK 155
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BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A7S0S086_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S086_9CHLO)

HSP 1 Score: 218 bits (555), Expect = 9.580e-67
Identity = 100/148 (67.57%), Postives = 123/148 (83.11%), Query Frame = 2 
Query:  308 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAES 751
            MRF L+GL V+FPYE++YPEQY YMLELKRSLDA+GH LLEMPTGTGKT+ L+SLITSYQ A+PEVGKL+YCTRTVPEM K + EL+ +I YR++ LGP+   ++AL LSSR+NLC+H  V EE  RE+VD  CR +TASWVR++A S
Sbjct:    1 MRFKLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHSLLEMPTGTGKTITLLSLITSYQLAHPEVGKLVYCTRTVPEMEKVLAELQELIAYRSKYLGPDAAPIMALGLSSRKNLCVHPTVAEEGSRESVDSGCRKLTASWVRERAVS 148
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BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A7R9TIP8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TIP8_9VIRI)

HSP 1 Score: 213 bits (542), Expect = 1.010e-66
Identity = 101/151 (66.89%), Postives = 122/151 (80.79%), Query Frame = 2 
Query:  308 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIE--ESDREAVDGACRDMTASWVRKKAESG 754
            M+F+LDG+DV+FPY+++YPEQY+YMLELKR+LDAKGHCLLEMPTGTGKT+ L+SLITSYQ ANP VGKL+YCTRTVPEM K + ELK +   RA  LG   +  LAL LSSRRN+CI+E V+    +DRE+VD  CR +TASWVR  AE G
Sbjct:    1 MKFNLDGMDVYFPYDYIYPEQYEYMLELKRTLDAKGHCLLEMPTGTGKTITLLSLITSYQVANPGVGKLVYCTRTVPEMEKVMAELKHLHSMRAHDLGERAKNFLALVLSSRRNMCINESVLAGAATDRESVDSRCRRLTASWVRDSAEVG 151
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BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A835XSX7_9CHLO (Helicase ATP-binding domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XSX7_9CHLO)

HSP 1 Score: 213 bits (543), Expect = 2.290e-65
Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = 2 
Query:  308 MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA 745
            M+F+L+GL V+FPYE++YPEQY YMLELKRSLDA+GHCLLEMPTGTGKT+ L+SLITSYQ A+ EVGKLIYCTRTVPEM K + EL  ++ YR++ L      +LAL LSSR+NLC+H RV EE  RE+VD  CR +TASWVR++A
Sbjct:    1 MKFNLEGLTVYFPYEYIYPEQYRYMLELKRSLDARGHCLLEMPTGTGKTITLLSLITSYQLAHKEVGKLIYCTRTVPEMEKVLSELSELVSYRSQHLPQGAGSILALGLSSRKNLCVHPRVAEEGSRESVDAGCRRLTASWVRERA 146
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BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Match: A0A7S2IEH0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEH0_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.090e-63
Identity = 118/235 (50.21%), Postives = 135/235 (57.45%), Query Frame = 2 
Query:  236 TLVSDTQLQPAGSRHCCCRA*EATMRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTVCLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQL-----------------------------------------------------------------GPEGEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKA 745
            T  S+ Q Q   ++H  C A    MRFDLDGLDVFFPYE +Y EQ+ YM  LK++LDA GHCLLEMPTGTGKTVCL+SLITSYQFANP  GKL+YCTRTVPEM   +EEL  V+ YRAEQL                                                                 G  G  VLALCLSSRRN+C+HERV+EESDREAVD ACR MTA+WV ++A
Sbjct:    7 TAGSEWQQQ---AQHTSCTA-YFNMRFDLDGLDVFFPYERIYLEQHQYMRSLKQALDAGGHCLLEMPTGTGKTVCLLSLITSYQFANPSAGKLVYCTRTVPEMNSVMEELATVLSYRAEQLQDDQNQQEVGDNGGTAMDGSGAKDIEDVVSADTPESNNGVRKXXXXXXXXXXXXXXXMGSIPDNGGAGGSGVLALCLSSRRNMCVHERVMEESDREAVDAACRSMTATWVLERA 237
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1165.1054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI2.250e-9395.97General transcription and DNA repair factor IIH he... [more]
A0A482RW16_9ARCH8.800e-7775.84Helicase ATP-binding domain-containing protein (Fr... [more]
K8YZX4_NANGC9.310e-7681.38General transcription and DNA repair factor IIH he... [more]
A0A836CJZ4_9STRA3.680e-7378.08General transcription and DNA repair factor IIH he... [more]
A0A7R9U4D1_9STRA5.160e-7274.34General transcription and DNA repair factor IIH he... [more]
A0A7S1CFN5_9STRA5.420e-6768.39Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0S086_9CHLO9.580e-6767.57Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7R9TIP8_9VIRI1.010e-6666.89Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A835XSX7_9CHLO2.290e-6567.12Helicase ATP-binding domain-containing protein n=1... [more]
A0A7S2IEH0_9STRA1.090e-6350.21Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1165contigS-dermatodea_contig1165:17388..22464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.6
Seed ortholog evalue2e-79
Seed eggNOG ortholog2880.D8LDN2
Preferred nameERCC2
KEGG koko:K10844
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
GOsGO:0000018,GO:0000019,GO:0000109,GO:0000112,GO:0000166,GO:0000428,GO:0000439,GO:0000717,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0001503,GO:0001701,GO:0001942,GO:0002244,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0005694,GO:0005700,GO:0005703,GO:0005705,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007272,GO:0007275,GO:0007346,GO:0007348,GO:0007399,GO:0007417,GO:0007568,GO:0008022,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008366,GO:0008544,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009650,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009794,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009913,GO:0009987,GO:0010001,GO:0010389,GO:0010467,GO:0010468,GO:0010525,GO:0010528,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010927,GO:0010948,GO:0010972,GO:0012501,GO:0014003,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0021510,GO:0021700,GO:0021782,GO:0022008,GO:0022010,GO:0022402,GO:0022404,GO:0022405,GO:0022607,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030198,GO:0030218,GO:0030282,GO:0030554,GO:0030855,GO:0030880,GO:0031214,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032288,GO:0032289,GO:0032291,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032806,GO:0032989,GO:0032991,GO:0033043,GO:0033554,GO:0033683,GO:0034101,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035315,GO:0035639,GO:0036094,GO:0036211,GO:0036260,GO:0040007,GO:0040016,GO:0042063,GO:0042303,GO:0042552,GO:0042592,GO:0042623,GO:0042633,GO:0043009,GO:0043062,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043249,GO:0043254,GO:0043388,GO:0043412,GO:0043588,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045786,GO:0045893,GO:0045911,GO:0045930,GO:0045935,GO:0045944,GO:0045951,GO:0045995,GO:0046483,GO:0047485,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048646,GO:0048699,GO:0048709,GO:0048731,GO:0048820,GO:0048821,GO:0048856,GO:0048863,GO:0048869,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051716,GO:0051726,GO:0051783,GO:0051983,GO:0055029,GO:0060218,GO:0060255,GO:0060429,GO:0061515,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070816,GO:0070911,GO:0071103,GO:0071695,GO:0071704,GO:0071817,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097367,GO:0097659,GO:0098687,GO:0098773,GO:0140097,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902554,GO:1902680,GO:1902749,GO:1902750,GO:1902911,GO:1903506,GO:1903508,GO:1990234,GO:1990391,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1131@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size757
Cds size450
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1165.1054.1prot_S-dermatodea_contig1165.1054.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1165 17695..22464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924212.58172-UTR-S-dermatodea_contig1165:17387..176941622924212.58172-UTR-S-dermatodea_contig1165:17387..17694Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1165 17388..17694 +
1694079096.9287791-UTR-S-dermatodea_contig1165:17387..176941694079096.9287791-UTR-S-dermatodea_contig1165:17387..17694Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1165 17388..17694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924212.5900133-CDS-S-dermatodea_contig1165:17694..178271622924212.5900133-CDS-S-dermatodea_contig1165:17694..17827Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 17695..17827 +
1694079096.939-CDS-S-dermatodea_contig1165:17694..178271694079096.939-CDS-S-dermatodea_contig1165:17694..17827Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 17695..17827 +
1622924212.6021712-CDS-S-dermatodea_contig1165:20355..205311622924212.6021712-CDS-S-dermatodea_contig1165:20355..20531Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 20356..20531 +
1694079096.9470634-CDS-S-dermatodea_contig1165:20355..205311694079096.9470634-CDS-S-dermatodea_contig1165:20355..20531Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 20356..20531 +
1622924212.6141431-CDS-S-dermatodea_contig1165:21203..212541622924212.6141431-CDS-S-dermatodea_contig1165:21203..21254Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 21204..21254 +
1694079096.955907-CDS-S-dermatodea_contig1165:21203..212541694079096.955907-CDS-S-dermatodea_contig1165:21203..21254Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 21204..21254 +
1622924212.6237314-CDS-S-dermatodea_contig1165:22374..224641622924212.6237314-CDS-S-dermatodea_contig1165:22374..22464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 22375..22464 +
1694079096.9649324-CDS-S-dermatodea_contig1165:22374..224641694079096.9649324-CDS-S-dermatodea_contig1165:22374..22464Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1165 22375..22464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1165.1054.1

>prot_S-dermatodea_contig1165.1054.1 ID=prot_S-dermatodea_contig1165.1054.1|Name=mRNA_S-dermatodea_contig1165.1054.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=150bp
MRFDLDGLDVFFPYEFMYPEQYDYMLELKRSLDAKGHCLLEMPTGTGKTV
CLISLITSYQFANPEVGKLIYCTRTVPEMMKCIEELKRVIGYRAEQLGPE
GEKVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRKKAESG*
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mRNA from alignment at S-dermatodea_contig1165:17388..22464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1165.1054.1 ID=mRNA_S-dermatodea_contig1165.1054.1|Name=mRNA_S-dermatodea_contig1165.1054.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5077bp|location=Sequence derived from alignment at S-dermatodea_contig1165:17388..22464+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACAGCAAGCACAATCAGCCAGGTGCCTTGTGCGTTGCCTTCTTAGCCCG
AAGAAATAACATATCGTGAACTCGTGAGAAAAAACGCCAGCCACCAGCTC
GCTGCTTGACATCGTGGTCGCACAGCAGCGCTTGGGAGCAAGGTGACCTC
AAACACCAGGCACCAGGCACTCCCTGGACGGGACTGTCAGGATATTTGCT
GGAGTATCAGGACCAGGCAGGAGCGACTTGAGGTAACCTTGGTCAGCGAT
ACACAGCTCCAACCAGCAGGCAGCCGGCACTGTTGTTGCCGCGCTTGAGA
AGCTACCATGAGGTTCGATCTCGACGGCCTGGATGTCTTCTTCCCGTACG
AGTTCATGTACCCGGAGCAGTACGACTACATGCTCGAGCTCAAGCGATCC
CTGGACGCCAAGGGGCACTGCTTGCTTGAGATGCCGACAGGTTCGATCTC
TAAGCCAACCTCTCTAGACAAAACAGCCGGTCGTGTTGCCTACGCCCTAC
CCATGTTGCTGTCATTTGCGGATAGGATATATTGAGCAGTAACTACTGCT
GTCTGTGCTGGTGTGTTATATAGCACCCTTCGGCATTCCAGAGGTTTTGG
CCCCGCCATGTTCATTCACGCCACTCCATGTGTCGATCAACATTAGCATT
GGACTCAGAGAGACGAAGGCGGTTGGCTGTTGGGTCCTGTGTCCTGTGGG
CGTTTTTGGCGATAGCAAGCGGCACCACATGATTTGGAACGCATATAATG
GTGTTGTATGTATCGTATCATATGTGTTCCGCACAGGCGGGGCCGCGTAT
CCTTGATGTAGCTATGGAGCTTCAAGCATTCGGCGCACTCGGCGCTGCAG
AGGAGCGCGACTTTCTCCTTCGCTCCGCAGCATTTGAGGTTGAGGGTGGA
TGGCGCGGCGATGTGCTTATTTCTGTACATATCCAGACAGCACAACAAGC
AGTGCGGAGCAAATAGCAACAGCGCAGTGGCACAGCAGCAGCCAGCTCCA
ACTGTTCACTTCGACTGTCTTTTGTGGGGTGCACTGGCTGACACTGCTCG
TTCTGTCCACCTGTCCCAGAAGGCGGGGGGTGGCTCCCGCGCCCACTGGC
ACTGCTCGCAATTTCGGAGTAGCGTATTGTTATAGTAGATCGACCAAATC
AAGCCGCCTCCTCACGAGGTCTGTAGATGGATCAAAACGACAAGACTAAC
ACTTGTTCAAAAGCCAAACCCACATCGCTGGTGATGATGCAAGGCGCAAA
AATCCGCGCGCGATTGAGTGGCACACCAAACACGTCTAATGGAGTTGCGG
TAACCCGCGCTGCCTATTGTTGACCCCCTAAAACACTATTATAAAATGCA
TTCAAAACAAAACATGGGAGCGAGCGCTGGCGTCCCACCGTTTTTTTTTT
TTTTAACCCTTTTGGTACTATTAATAGAGCTCTAGAGCTCTATAGCATTA
GAGCTCTAGGAGTATTAATATATTTTTAATAGTAGGGCTCTCCGAAACGA
CCAAAAACCCTCTCAATGCCAGTCGACTGCTGCGACAGCCCCGCTTGGTT
CCCTTGAGTTCCGTTCTTTCTCATACAGCATATCCTGCGCCATAAGGCGT
GGGTTCCGTTCCCCAGAGCTCCGCTTCAAGCACGCCTCATTACGTGCATA
CGCCGCTACAAACAGGGGGCTAGTGCCAAAAGGGTTAAGGAAGGAAGGAA
GGAGAGATGGTGCAAGCTGTTATATTCTTCAAAGTATACACACCTTTACA
CGGGCATATGGGAAATATATTTTGTTTTTTATATATACAAGCTTGCGTTA
CGTACGATGCTACAGCAGCCGTACATATGCCTTACTGAGAGAGTAAAGGA
CTACTTGTACCTACTCTCGGTTTCCCCTGGAATGCGCCCGTGAGTTAGGG
ATGTACAGGTGAACTCGATTATGTTTTTTCATAAATTGGTTTTGTGTTTG
ATTGATTGAGTGACTGATTGATTGATTGCGTGACTGACTGATTGATTGAT
TTGCACACGGACAGCCGATCGGCTTAACCCGACCGGACTTGTGGTCAGAT
GCTATCGCAAAGAGTCAAGGATAAGTTTTATTTTTATTAGTACAACAAGG
AACCTTTTTTAAGAGCGAGTTAGAGAACGATTCTGTAACACGACGATATG
AGGCCGATTCGTATACTAAATTCCTATACGACTTTGTGATTTTTTTAATG
CGGTCGCTCACCTCACGGGCATCGCCAAGGCTGCCTATTAATAGAGCTAA
TCAGAGCTCTGCTTCTACTATTAATATACACAATACCGTCGTCCCTGGTA
CCAAGTATGGCACAAGACGAAATGTCACTGCTCCATGTATATTGCTATGG
AACCTCCACGCCCCCCCCCCCCCCCCCCCCCCCCCCAAAAAAACAAAAAT
CAAAAAAATATTCACGCGCCTTGAGCTCCTATCGAATCGTGAAGAAGTAT
TGATTGTACGTGTGTGGNNNNNNNNNNGGATGTGGCTTTTTCTATTAATA
AAAACAAAACCGTCCGCCCTGGTACCAAGTAGGGCACAAAAGGAAATGGC
ACTCCTCCATGTTTTTTGTTTTGGAACCCCCCCCCCCCCCCCCCCCCCCC
CGTCCCCAAGTAGACAGGATAGGAAATACATTTTTGCGCCACCTTTGGCA
GAGTAGGAAGGAACGATTGGCCGTCGGCGATCGATCGATCGATCCTGTTG
GAACAATGCTACCTCTGTCCTCTCGAGGACGCCTGGTCAATGCTCTAATA
GCTACGGCATGCAAAACATGAGTACCCCCCTGAAAACAGTAAACATTAAG
ATTTATGAACACAGAACTAGCACCCCCCCCCCCACACCCCTAAAACAATA
TAGATTTCAGAAACATAAAGCGAGCGTTGCCCCCCCGTAAACTGCTGTAA
ACCTGGCTCTTCTTCCTCGTTCGTATGTCGCCGCCGCCGCCGCCGCCGCC
GCCCGCGCTTTCGTATAGGCACCGGCAAAACGGTCTGCCTAATCTCCCTC
ATCACGTCTTACCAGTTCGCGAACCCTGAAGTGGGGAAGTTGATATACTG
CACCCGCACCGTTCCTGAGATGATGAAGTGCATCGAGGAGCTCAAGAGGG
TGATCGGTTACCGCGCGGAGCAGCTGGGGCCTGAGGGGGAGAAGGTGTGC
GCTTCCTTGTGCAGATGCGAGGAATCGGGTATATCGGTTGTTTTTTTTGG
CTGCGCGTCCTCGTGTGACTGGCCGGGCGAGACAGGCTGCCACGCTGTCA
GGACGTGCGCCTCGCGCTTGTAGAGTACACGTACAAGTAAAACTATTATA
GTGGTACAGACTTGGTATTTTGAAGGGATCTATTAATAGCTGTAGTATGA
TACGTTTTTTTGTTTTTTTAGTTTCGTTTTTCCGATCTTCGCGCGCGATC
GTTCGATTGTGTTACCCGAGATCATCAGGGCATGCTCCGATTACGCAGCA
CTTATTGCATTTACAAAAGTAAACGTTGACAGTACAAGGTGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAGGATCTGTGG
GCGTCTGTTGTTGTATTTTCGTAGGGAGCATATAACGTAGGCTTCCACTG
AGTTAACTTGGGCCATCTTTCTTCTCCTCTACCAAAATATTGGACCCCAA
CGCTTGTTCAGTGTTTATAAATCTGTATTGTTTTCAGGGGGCGTAGGGAG
AGATATGTGCGTTGGGTGCTAGGCTGCGCTGGGCTATATGCATCGCTGCT
ATATACCCTCCCTGCCGCGTATGTTGCTGACTGGCCTACGACGTGCGCGC
GCCGTGCTCTCGGCAGGTCCTGGCACTCTGTCTCAGCTCCCGGCGGAACC
TGTGCATTCACGAAAGGGTGAGTGCCTCTTGCGTTCTGATGTCGGTCCTA
AGCCGTCGACGCCAGTGTAACGATCATGCAGGATGTTGACTGTCTCTTAT
GCCACTAGACTCTCACTCGCATTGATATATTATTAGCTTGATTAGGTCGG
AAACGTCCCTATGAATAGCTCAAAGAAGTTATCAACAAGCGGGGAGGGCG
CTAACAGCAGCCCGCACCCGTTATACCCCAAATAAATACCTAATCTTGGG
ACTCACGTCCCCGGATATATAACGCCTACCTAACACTATAACAATATATC
AGTTACACGTGAAGCCTCCGCGTAGAGAGAGGGAGCCCACAAATGTCGAT
GTTCGTCTGAGCAGTGCTGCCAGTGGGTGGTTGCTTAGTGTTGGGGTACT
TTTACATAGCATGAATGGTGGTTGGCATACTTGGGGCGCTGGAGGCGCAT
TTGACCGTTACTTCCGAACCGGTACTTCGGGTGTTGGGTCGTGTTCTGTT
TTTTTTTGTCCGGGATGTTTGATATTTACGTTAGGCGCACGCCGTACACC
CCACTTCTCTCCGATGTGCAAAGCAAACGGTAATTTATTTTTTGATAGAA
AGAACCAGAAGACAGAAAGTGTATTGTACGATCCGTAACTCGTCGGACAG
GGCAGGACAGAACCTTCCCCGGGTGGACTTTTGCCGTGCACAAAGCTGAG
ATGATTCCATCGGCCGCCCGAAAGGAGATATACCCTTATCAATTCCAGTA
AATTATTAGTACAACATATGGTCCAGGCGACTCCCCCAGTGCAATGCTTG
GGTCAGCAGAACATATTGTTACCTCCGTCGCTGGTCGCCCATTAAGTCGT
ATCCTACCGATGCGCCGCCTACGGAATCAACCAACCGTCCACGAAGGCCT
TCTACTTATAATATACTTACTTATAACGTACTATTGGCTTTCTGCAGACG
TCACCGTCGCCGTTGAGACCCTACGCGCGATGCCCTCGAGGCCCACCTGT
GCAAGGCAAAGCCGGATCACGGGAAACGTATGTTTGTGTGTGTGTGGTCA
GTCGTGTGATCCATCGGCCCGGCCGTCTTTCTTCCTCCACCCTCTAATGT
CTGGCTGTTGCGTTGTTCTAACCACCTCTCGCCAAAGGTTATCGAGGAGA
GCGATCGGGAAGCTGTGGACGGCGCTTGCCGGGATATGACCGCGAGCTGG
GTCAGAAAAAAGGCGGAATCCGGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1165:17388..22464+

>mRNA_S-dermatodea_contig1165.1054.1 ID=mRNA_S-dermatodea_contig1165.1054.1|Name=mRNA_S-dermatodea_contig1165.1054.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=900bp|location=Sequence derived from alignment at S-dermatodea_contig1165:17388..22464+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGTTCGATCTCGACGGCCTGGATGTCTTCTTCCCGTACGAGTTCAT
GTACCCGGAGCAGTACGACTACATGCTCGAGCTCAAGCGATCCCTGGACG
CCAAGGGGCACTGCTTGCTTGAGATGCCGACAGATGAGGTTCGATCTCGA
CGGCCTGGATGTCTTCTTCCCGTACGAGTTCATGTACCCGGAGCAGTACG
ACTACATGCTCGAGCTCAAGCGATCCCTGGACGCCAAGGGGCACTGCTTG
CTTGAGATGCCGACAGGCACCGGCAAAACGGTCTGCCTAATCTCCCTCAT
CACGTCTTACCAGTTCGCGAACCCTGAAGTGGGGAAGTTGATATACTGCA
CCCGCACCGTTCCTGAGATGATGAAGTGCATCGAGGAGCTCAAGAGGGTG
ATCGGTTACCGCGCGGAGCAGCTGGGGCCTGAGGGGGAGAAGGCACCGGC
AAAACGGTCTGCCTAATCTCCCTCATCACGTCTTACCAGTTCGCGAACCC
TGAAGTGGGGAAGTTGATATACTGCACCCGCACCGTTCCTGAGATGATGA
AGTGCATCGAGGAGCTCAAGAGGGTGATCGGTTACCGCGCGGAGCAGCTG
GGGCCTGAGGGGGAGAAGGTCCTGGCACTCTGTCTCAGCTCCCGGCGGAA
CCTGTGCATTCACGAAAGGGTCCTGGCACTCTGTCTCAGCTCCCGGCGGA
ACCTGTGCATTCACGAAAGGGTTATCGAGGAGAGCGATCGGGAAGCTGTG
GACGGCGCTTGCCGGGATATGACCGCGAGCTGGGTCAGAAAAAAGGCGGA
ATCCGGGTGAGTTATCGAGGAGAGCGATCGGGAAGCTGTGGACGGCGCTT
GCCGGGATATGACCGCGAGCTGGGTCAGAAAAAAGGCGGAATCCGGGTGA
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