prot_S-dermatodea_contig11569.1001.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11569.1001.1
Unique Nameprot_S-dermatodea_contig11569.1001.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length215
Homology
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 8.590e-61
Identity = 116/204 (56.86%), Postives = 138/204 (67.65%), Query Frame = 0
Query:   10 VPAGRTTDVVKAAADKLRRAAAADGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILELADPIFGPPDELAAGNRVRLY 213
            V A + +  +KAA D +R  A A+  L+ +DIEW IS  GAP N PATIQLAAGK VV+F VLHGQ   P++LPDP+ D+L D  L KTG  I GDCTRL   YGV V  AVDL   A    V++G  RGLADL  HLLG+ L KD  VRLS WN  +LS +Q+RYAALDAYA L +H RI EL+D IF   +EL  G+RVRLY
Sbjct:  227 VKANQDSPCLKAAVDAIRMQAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKRYAALDAYACLLLHGRIGELSDSIFRDAEELHVGDRVRLY 430          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A6G1C5K1_9ORYZ (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1C5K1_9ORYZ)

HSP 1 Score: 94.7 bits (234), Expect = 1.750e-20
Identity = 54/161 (33.54%), Postives = 86/161 (53.42%), Query Frame = 0
Query:   33 DGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGC-GVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 192
            D  ++G+D+EW            A +Q+  G++ ++F++LH   V     PD + D L D      G  I  D  +L++HYG+ V++A+DL   AA   G    R+ GL  L   ++G    K  HVR+SAW+SR+L+ +Q  YA  DA+AS  + R + +
Sbjct:   50 DHLIVGLDVEWRPVIFFCVPGPVAVLQICVGRLCLIFQILHADYV-----PDQLGDFLADDRFTFVGVGIHDDVAKLKEHYGLEVENAMDLRNLAAQTLGKPALRSTGLQGLVWEVMGVWPEKPHHVRVSAWDSRQLTLDQVMYACADAFASFEVGRSLYD 205          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A0E0JIE8_ORYPU (3'-5' exonuclease domain-containing protein n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0JIE8_ORYPU)

HSP 1 Score: 92.8 bits (229), Expect = 9.500e-20
Identity = 54/161 (33.54%), Postives = 84/161 (52.17%), Query Frame = 0
Query:   33 DGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDL-VKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 192
            D  ++G+D+EW  +         A +Q+  G+  +VF+++H   V     PD + D L D      G  I  D  +LR+HY + V++AVDL   AA   G    R+ GL  L   ++   + K  HVR+SAW+SR+L+ EQ  YA  D +AS  + R + +
Sbjct:   50 DHLIVGLDVEWRPASGFCAPGPVAVLQICIGRRCLVFQIIHADYV-----PDQLGDFLGDGRFTFVGVGISDDVDKLREHYELEVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMSVWMEKPHHVRVSAWDSRQLTLEQVMYACADPFASFEVGRSLYD 205          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: B9FDW5_ORYSJ (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9FDW5_ORYSJ)

HSP 1 Score: 90.9 bits (224), Expect = 1.940e-19
Identity = 58/157 (36.94%), Postives = 82/157 (52.23%), Query Frame = 0
Query:   36 LIGMDIEWAISKRGAPENAP-ATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGC-GVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRI 190
            ++G+D+EW   +  AP   P A +QL   +  +VF++LH   V     PD ++  L D      G  +  D  RLR  YG+ V  AVDL   AA   G    R  GL  L   ++G  + K  HVR+SAW+ R LS +Q +YA  DA+AS  + RR+
Sbjct:   10 VVGLDVEW---RPAAPVPGPVAVLQLCVDRRCLVFQILHADYV-----PDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFASREVGRRL 158          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A0E0IQK6_ORYNI (3'-5' exonuclease domain-containing protein n=8 Tax=Oryza TaxID=4527 RepID=A0A0E0IQK6_ORYNI)

HSP 1 Score: 90.5 bits (223), Expect = 7.660e-19
Identity = 58/157 (36.94%), Postives = 82/157 (52.23%), Query Frame = 0
Query:   36 LIGMDIEWAISKRGAPENAP-ATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGC-GVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRI 190
            ++G+D+EW   +  AP   P A +QL   +  +VF++LH        LPD ++  L D      G  +  D  RLR  YG+ V  AVDL   AA   G    R  GL  L   ++G  + K  HVR+SAW+ R LS +Q +YA  DA+AS  + RR+
Sbjct:   55 VVGLDVEW---RPAAPVPGPVAVLQLCVDRRCLVFQILHADY-----LPDALSRFLADPRYTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFASREVGRRL 203          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A2ZXL8_ORYSJ (3'-5' exonuclease domain-containing protein n=4 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A2ZXL8_ORYSJ)

HSP 1 Score: 92.0 bits (227), Expect = 8.210e-19
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 0
Query:   33 DGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDL-VKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 192
            D  ++G+D+EW  +         A +Q+  G+  +VF+++H   V     PD + D L D      G  I  D  +LR+HY + V++AVDL   AA   G    R+ GL  L   ++   + K  HVR+SAW+SR+L+ +Q  YA  DA+AS  + R + +
Sbjct:  129 DHLIVGLDVEWNPASGFCALGPVAVLQICVGRRCLVFQIIHADYV-----PDQLGDFLGDGRFTFVGVGIHDDVDKLREHYDLEVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVMYACADAFASFEVGRSLYD 284          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: Q5JND5_ORYSJ (Uncharacterized protein OSJNBb0021A09.19 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q5JND5_ORYSJ)

HSP 1 Score: 92.0 bits (227), Expect = 1.440e-18
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 0
Query:   33 DGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDL-VKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 192
            D  ++G+D+EW  +         A +Q+  G+  +VF+++H   V     PD + D L D      G  I  D  +LR+HY + V++AVDL   AA   G    R+ GL  L   ++   + K  HVR+SAW+SR+L+ +Q  YA  DA+AS  + R + +
Sbjct:  169 DHLIVGLDVEWNPASGFCALGPVAVLQICVGRRCLVFQIIHADYV-----PDQLGDFLGDGRFTFVGVGIHDDVDKLREHYDLEVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVMYACADAFASFEVGRSLYD 324          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A4D6NIA3_VIGUN (Werner syndrome ATP-dependent helicase n=2 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6NIA3_VIGUN)

HSP 1 Score: 89.4 bits (220), Expect = 3.160e-18
Identity = 56/170 (32.94%), Postives = 88/170 (51.76%), Query Frame = 0
Query:   27 RRAAAADGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAG----CGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 192
            R A    G ++G+D+EW  + R   +N  AT+QL  G   +VF+++H   +     P  +A +L + ++   G  I  D  +L + Y +HV +  DL   AA     C     R  GL  L  H+LG  + K + +  S W++R L+ EQ +YAA+DA+ S  I RR+ E
Sbjct:   65 RNAGRRQGLMVGLDVEWRPNTRANMQNPVATLQLCVGHACLVFQIIHSPYI-----PRSLASLLQNPNVTFFGVGIRDDAEKLLRDYDLHVANVCDLRSLAADKIWRC--PHLRQAGLKTLCVHVLGVDVEKPQRISRSFWDNRWLTGEQVQYAAIDAFLSYEIGRRLNE 227          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A0G2HBP8_9EURO (Putative ring finger domain-containing protein n=1 Tax=Phaeomoniella chlamydospora TaxID=158046 RepID=A0A0G2HBP8_9EURO)

HSP 1 Score: 92.8 bits (229), Expect = 3.750e-18
Identity = 64/175 (36.57%), Postives = 91/175 (52.00%), Query Frame = 0
Query:   35 NLIGMDIEWAIS-KRGAP-ENAPATIQLAAGKVVVVFRV----------LHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKA-------AAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRI 190
            N++G D+EW+ S K G P E   + IQLA    +V+F V          L  Q+V   KL   +A +L D ++RK GASI  DCTRL +H G+ V+ A++L            G  V   +   LA+L        L KD+ +RL  W++  LS +   YAA DAYA L ++RR+
Sbjct: 1522 NVVGFDLEWSPSAKIGDPVEKNVSMIQLAGEHCIVLFHVARLFKSGERYLRKQTVLDQKLR-ALASLLKDPNIRKVGASIKADCTRLERHLGIQVQGALELSHLHSQLEYHTGGRQVPDKKATSLANLVQQYFQMQLPKDREIRLHDWSNSSLSLDHISYAAADAYAGLQLYRRM 1695          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A6P6Q611_CARAU (DNA helicase n=7 Tax=Cyprininae TaxID=2743694 RepID=A0A6P6Q611_CARAU)

HSP 1 Score: 92.4 bits (228), Expect = 4.890e-18
Identity = 61/172 (35.47%), Postives = 88/172 (51.16%), Query Frame = 0
Query:   28 RAAAADGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILELADPIFG 199
            R++ A G+ +G D+EW  S         A +QL A +        H  S+  S  P  +  +L D++++K G  I GD  +L   Y + +KS V+L   A    +  G    L  L  HLL K L KDKHVR S W+  +L+ +Q+RYAA DAYA L I++ + EL     G
Sbjct:   57 RSSLASGSAVGFDLEWPPSFTKGKTKKVAVVQLCASEEKCYL--FHISSM--SGFPPGLKMLLEDENIKKVGVGIEGDKWKLLSDYDIKLKSIVELSDLANET-LRCGEKWSLDGLVKHLLKKQLFKDKHVRCSHWDDYDLTEDQKRYAATDAYAGLLIYQSLQELTSGCSG 223          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE8.590e-6156.863'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6G1C5K1_9ORYZ1.750e-2033.543'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A0E0JIE8_ORYPU9.500e-2033.543'-5' exonuclease domain-containing protein n=7 Ta... [more]
B9FDW5_ORYSJ1.940e-1936.943'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A0E0IQK6_ORYNI7.660e-1936.943'-5' exonuclease domain-containing protein n=8 Ta... [more]
A2ZXL8_ORYSJ8.210e-1933.543'-5' exonuclease domain-containing protein n=4 Ta... [more]
Q5JND5_ORYSJ1.440e-1833.54Uncharacterized protein OSJNBb0021A09.19 n=1 Tax=O... [more]
A0A4D6NIA3_VIGUN3.160e-1832.94Werner syndrome ATP-dependent helicase n=2 Tax=Vig... [more]
A0A0G2HBP8_9EURO3.750e-1836.57Putative ring finger domain-containing protein n=1... [more]
A0A6P6Q611_CARAU4.890e-1835.47DNA helicase n=7 Tax=Cyprininae TaxID=2743694 RepI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainSMARTSM0047435exoneu6coord: 10..195
e-value: 1.6E-5
score: 34.4
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 31..191
e-value: 1.2E-13
score: 51.2
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 6..196
e-value: 6.1E-43
score: 148.3
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 10..186
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 33..190

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11569contigS-dermatodea_contig11569:1105..2019 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11569.1001.1mRNA_S-dermatodea_contig11569.1001.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11569 1084..2019 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11569.1001.1 ID=prot_S-dermatodea_contig11569.1001.1|Name=mRNA_S-dermatodea_contig11569.1001.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=215bp
MPEDVSVMVVPAGRTTDVVKAAADKLRRAAAADGNLIGMDIEWAISKRGA
PENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGA
SIGGDCTRLRKHYGVHVKSAVDLVKAAAGCGVDIGRNRGLADLTSHLLGK
GLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILELADPIFGP
PDELAAGNRVRLYIS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf