mRNA_S-dermatodea_contig11569.1001.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE) HSP 1 Score: 219 bits (557), Expect = 4.970e-62 Identity = 121/218 (55.50%), Postives = 146/218 (66.97%), Query Frame = 1
Query: 10 PLLEMPEDVSV-MVVPAGRTTDVVKAAADKLRRAAAADGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILELADPIFGPPDELAAGNRVRLY 660
P+L +P DV + V A + + +KAA D +R A A+ L+ +DIEW IS GAP N PATIQLAAGK VV+F VLHGQ P++LPDP+ D+L D L KTG I GDCTRL YGV V AVDL A V++G RGLADL HLLG+ L KD VRLS WN +LS +Q+RYAALDAYA L +H RI EL+D IF +EL G+RVRLY
Sbjct: 213 PVLHLPPDVVLGEPVKANQDSPCLKAAVDAIRMQAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKRYAALDAYACLLLHGRIGELSDSIFRDAEELHVGDRVRLY 430
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A6G1C5K1_9ORYZ (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1C5K1_9ORYZ) HSP 1 Score: 94.7 bits (234), Expect = 2.100e-20 Identity = 54/161 (33.54%), Postives = 86/161 (53.42%), Query Frame = 1
Query: 118 DGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGC-GVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 597
D ++G+D+EW A +Q+ G++ ++F++LH V PD + D L D G I D +L++HYG+ V++A+DL AA G R+ GL L ++G K HVR+SAW+SR+L+ +Q YA DA+AS + R + +
Sbjct: 50 DHLIVGLDVEWRPVIFFCVPGPVAVLQICVGRLCLIFQILHADYV-----PDQLGDFLADDRFTFVGVGIHDDVAKLKEHYGLEVENAMDLRNLAAQTLGKPALRSTGLQGLVWEVMGVWPEKPHHVRVSAWDSRQLTLDQVMYACADAFASFEVGRSLYD 205
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A0E0JIE8_ORYPU (3'-5' exonuclease domain-containing protein n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0JIE8_ORYPU) HSP 1 Score: 92.8 bits (229), Expect = 1.140e-19 Identity = 54/161 (33.54%), Postives = 84/161 (52.17%), Query Frame = 1
Query: 118 DGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDL-VKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 597
D ++G+D+EW + A +Q+ G+ +VF+++H V PD + D L D G I D +LR+HY + V++AVDL AA G R+ GL L ++ + K HVR+SAW+SR+L+ EQ YA D +AS + R + +
Sbjct: 50 DHLIVGLDVEWRPASGFCAPGPVAVLQICIGRRCLVFQIIHADYV-----PDQLGDFLGDGRFTFVGVGISDDVDKLREHYELEVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMSVWMEKPHHVRVSAWDSRQLTLEQVMYACADPFASFEVGRSLYD 205
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: B9FDW5_ORYSJ (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9FDW5_ORYSJ) HSP 1 Score: 90.9 bits (224), Expect = 2.310e-19 Identity = 58/157 (36.94%), Postives = 82/157 (52.23%), Query Frame = 1
Query: 127 LIGMDIEWAISKRGAPENAP-ATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGC-GVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRI 591
++G+D+EW + AP P A +QL + +VF++LH V PD ++ L D G + D RLR YG+ V AVDL AA G R GL L ++G + K HVR+SAW+ R LS +Q +YA DA+AS + RR+
Sbjct: 10 VVGLDVEW---RPAAPVPGPVAVLQLCVDRRCLVFQILHADYV-----PDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFASREVGRRL 158
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A0E0IQK6_ORYNI (3'-5' exonuclease domain-containing protein n=8 Tax=Oryza TaxID=4527 RepID=A0A0E0IQK6_ORYNI) HSP 1 Score: 90.5 bits (223), Expect = 9.150e-19 Identity = 58/157 (36.94%), Postives = 82/157 (52.23%), Query Frame = 1
Query: 127 LIGMDIEWAISKRGAPENAP-ATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGC-GVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRI 591
++G+D+EW + AP P A +QL + +VF++LH LPD ++ L D G + D RLR YG+ V AVDL AA G R GL L ++G + K HVR+SAW+ R LS +Q +YA DA+AS + RR+
Sbjct: 55 VVGLDVEW---RPAAPVPGPVAVLQLCVDRRCLVFQILHADY-----LPDALSRFLADPRYTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFASREVGRRL 203
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A2ZXL8_ORYSJ (3'-5' exonuclease domain-containing protein n=4 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A2ZXL8_ORYSJ) HSP 1 Score: 92.0 bits (227), Expect = 9.820e-19 Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 1
Query: 118 DGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDL-VKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 597
D ++G+D+EW + A +Q+ G+ +VF+++H V PD + D L D G I D +LR+HY + V++AVDL AA G R+ GL L ++ + K HVR+SAW+SR+L+ +Q YA DA+AS + R + +
Sbjct: 129 DHLIVGLDVEWNPASGFCALGPVAVLQICVGRRCLVFQIIHADYV-----PDQLGDFLGDGRFTFVGVGIHDDVDKLREHYDLEVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVMYACADAFASFEVGRSLYD 284
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: Q5JND5_ORYSJ (Uncharacterized protein OSJNBb0021A09.19 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q5JND5_ORYSJ) HSP 1 Score: 92.0 bits (227), Expect = 1.720e-18 Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 1
Query: 118 DGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDL-VKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 597
D ++G+D+EW + A +Q+ G+ +VF+++H V PD + D L D G I D +LR+HY + V++AVDL AA G R+ GL L ++ + K HVR+SAW+SR+L+ +Q YA DA+AS + R + +
Sbjct: 169 DHLIVGLDVEWNPASGFCALGPVAVLQICVGRRCLVFQIIHADYV-----PDQLGDFLGDGRFTFVGVGIHDDVDKLREHYDLEVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVMYACADAFASFEVGRSLYD 324
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A4D6NIA3_VIGUN (Werner syndrome ATP-dependent helicase n=2 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6NIA3_VIGUN) HSP 1 Score: 89.4 bits (220), Expect = 3.760e-18 Identity = 56/170 (32.94%), Postives = 88/170 (51.76%), Query Frame = 1
Query: 100 RRAAAADGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAG----CGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 597
R A G ++G+D+EW + R +N AT+QL G +VF+++H + P +A +L + ++ G I D +L + Y +HV + DL AA C R GL L H+LG + K + + S W++R L+ EQ +YAA+DA+ S I RR+ E
Sbjct: 65 RNAGRRQGLMVGLDVEWRPNTRANMQNPVATLQLCVGHACLVFQIIHSPYI-----PRSLASLLQNPNVTFFGVGIRDDAEKLLRDYDLHVANVCDLRSLAADKIWRC--PHLRQAGLKTLCVHVLGVDVEKPQRISRSFWDNRWLTGEQVQYAAIDAFLSYEIGRRLNE 227
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A0G2HBP8_9EURO (Putative ring finger domain-containing protein n=1 Tax=Phaeomoniella chlamydospora TaxID=158046 RepID=A0A0G2HBP8_9EURO) HSP 1 Score: 92.8 bits (229), Expect = 4.570e-18 Identity = 64/175 (36.57%), Postives = 91/175 (52.00%), Query Frame = 1
Query: 124 NLIGMDIEWAIS-KRGAP-ENAPATIQLAAGKVVVVFRV----------LHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKA-------AAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRI 591
N++G D+EW+ S K G P E + IQLA +V+F V L Q+V KL +A +L D ++RK GASI DCTRL +H G+ V+ A++L G V + LA+L L KD+ +RL W++ LS + YAA DAYA L ++RR+
Sbjct: 1522 NVVGFDLEWSPSAKIGDPVEKNVSMIQLAGEHCIVLFHVARLFKSGERYLRKQTVLDQKLR-ALASLLKDPNIRKVGASIKADCTRLERHLGIQVQGALELSHLHSQLEYHTGGRQVPDKKATSLANLVQQYFQMQLPKDREIRLHDWSNSSLSLDHISYAAADAYAGLQLYRRM 1695
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A6P6Q611_CARAU (DNA helicase n=7 Tax=Cyprininae TaxID=2743694 RepID=A0A6P6Q611_CARAU) HSP 1 Score: 92.4 bits (228), Expect = 5.940e-18 Identity = 61/172 (35.47%), Postives = 88/172 (51.16%), Query Frame = 1
Query: 103 RAAAADGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILELADPIFG 618
R++ A G+ +G D+EW S A +QL A + H S+ S P + +L D++++K G I GD +L Y + +KS V+L A + G L L HLL K L KDKHVR S W+ +L+ +Q+RYAA DAYA L I++ + EL G
Sbjct: 57 RSSLASGSAVGFDLEWPPSFTKGKTKKVAVVQLCASEEKCYL--FHISSM--SGFPPGLKMLLEDENIKKVGVGIEGDKWKLLSDYDIKLKSIVELSDLANET-LRCGEKWSLDGLVKHLLKKQLFKDKHVRCSHWDDYDLTEDQKRYAATDAYAGLLIYQSLQELTSGCSG 223 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11569.1001.1 >prot_S-dermatodea_contig11569.1001.1 ID=prot_S-dermatodea_contig11569.1001.1|Name=mRNA_S-dermatodea_contig11569.1001.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=215bp MPEDVSVMVVPAGRTTDVVKAAADKLRRAAAADGNLIGMDIEWAISKRGAback to top mRNA from alignment at S-dermatodea_contig11569:1084..2019+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig11569.1001.1 ID=mRNA_S-dermatodea_contig11569.1001.1|Name=mRNA_S-dermatodea_contig11569.1001.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=936bp|location=Sequence derived from alignment at S-dermatodea_contig11569:1084..2019+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig11569:1084..2019+ >mRNA_S-dermatodea_contig11569.1001.1 ID=mRNA_S-dermatodea_contig11569.1001.1|Name=mRNA_S-dermatodea_contig11569.1001.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at S-dermatodea_contig11569:1084..2019+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |