mRNA_S-dermatodea_contig11569.1001.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11569.1001.1
Unique NamemRNA_S-dermatodea_contig11569.1001.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 4.970e-62
Identity = 121/218 (55.50%), Postives = 146/218 (66.97%), Query Frame = 1
Query:   10 PLLEMPEDVSV-MVVPAGRTTDVVKAAADKLRRAAAADGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILELADPIFGPPDELAAGNRVRLY 660
            P+L +P DV +   V A + +  +KAA D +R  A A+  L+ +DIEW IS  GAP N PATIQLAAGK VV+F VLHGQ   P++LPDP+ D+L D  L KTG  I GDCTRL   YGV V  AVDL   A    V++G  RGLADL  HLLG+ L KD  VRLS WN  +LS +Q+RYAALDAYA L +H RI EL+D IF   +EL  G+RVRLY
Sbjct:  213 PVLHLPPDVVLGEPVKANQDSPCLKAAVDAIRMQAEANNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQKRYAALDAYACLLLHGRIGELSDSIFRDAEELHVGDRVRLY 430          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A6G1C5K1_9ORYZ (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1C5K1_9ORYZ)

HSP 1 Score: 94.7 bits (234), Expect = 2.100e-20
Identity = 54/161 (33.54%), Postives = 86/161 (53.42%), Query Frame = 1
Query:  118 DGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGC-GVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 597
            D  ++G+D+EW            A +Q+  G++ ++F++LH   V     PD + D L D      G  I  D  +L++HYG+ V++A+DL   AA   G    R+ GL  L   ++G    K  HVR+SAW+SR+L+ +Q  YA  DA+AS  + R + +
Sbjct:   50 DHLIVGLDVEWRPVIFFCVPGPVAVLQICVGRLCLIFQILHADYV-----PDQLGDFLADDRFTFVGVGIHDDVAKLKEHYGLEVENAMDLRNLAAQTLGKPALRSTGLQGLVWEVMGVWPEKPHHVRVSAWDSRQLTLDQVMYACADAFASFEVGRSLYD 205          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A0E0JIE8_ORYPU (3'-5' exonuclease domain-containing protein n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0JIE8_ORYPU)

HSP 1 Score: 92.8 bits (229), Expect = 1.140e-19
Identity = 54/161 (33.54%), Postives = 84/161 (52.17%), Query Frame = 1
Query:  118 DGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDL-VKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 597
            D  ++G+D+EW  +         A +Q+  G+  +VF+++H   V     PD + D L D      G  I  D  +LR+HY + V++AVDL   AA   G    R+ GL  L   ++   + K  HVR+SAW+SR+L+ EQ  YA  D +AS  + R + +
Sbjct:   50 DHLIVGLDVEWRPASGFCAPGPVAVLQICIGRRCLVFQIIHADYV-----PDQLGDFLGDGRFTFVGVGISDDVDKLREHYELEVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMSVWMEKPHHVRVSAWDSRQLTLEQVMYACADPFASFEVGRSLYD 205          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: B9FDW5_ORYSJ (3'-5' exonuclease domain-containing protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=B9FDW5_ORYSJ)

HSP 1 Score: 90.9 bits (224), Expect = 2.310e-19
Identity = 58/157 (36.94%), Postives = 82/157 (52.23%), Query Frame = 1
Query:  127 LIGMDIEWAISKRGAPENAP-ATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGC-GVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRI 591
            ++G+D+EW   +  AP   P A +QL   +  +VF++LH   V     PD ++  L D      G  +  D  RLR  YG+ V  AVDL   AA   G    R  GL  L   ++G  + K  HVR+SAW+ R LS +Q +YA  DA+AS  + RR+
Sbjct:   10 VVGLDVEW---RPAAPVPGPVAVLQLCVDRRCLVFQILHADYV-----PDALSRFLADPRFTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFASREVGRRL 158          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A0E0IQK6_ORYNI (3'-5' exonuclease domain-containing protein n=8 Tax=Oryza TaxID=4527 RepID=A0A0E0IQK6_ORYNI)

HSP 1 Score: 90.5 bits (223), Expect = 9.150e-19
Identity = 58/157 (36.94%), Postives = 82/157 (52.23%), Query Frame = 1
Query:  127 LIGMDIEWAISKRGAPENAP-ATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGC-GVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRI 591
            ++G+D+EW   +  AP   P A +QL   +  +VF++LH        LPD ++  L D      G  +  D  RLR  YG+ V  AVDL   AA   G    R  GL  L   ++G  + K  HVR+SAW+ R LS +Q +YA  DA+AS  + RR+
Sbjct:   55 VVGLDVEW---RPAAPVPGPVAVLQLCVDRRCLVFQILHADY-----LPDALSRFLADPRYTFVGVGVRDDAARLRVGYGLEVPRAVDLRALAADTLGRPDLRRAGLRALVREVMGVQMDKPHHVRVSAWDKRNLSEDQFKYACADAFASREVGRRL 203          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A2ZXL8_ORYSJ (3'-5' exonuclease domain-containing protein n=4 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A2ZXL8_ORYSJ)

HSP 1 Score: 92.0 bits (227), Expect = 9.820e-19
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  118 DGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDL-VKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 597
            D  ++G+D+EW  +         A +Q+  G+  +VF+++H   V     PD + D L D      G  I  D  +LR+HY + V++AVDL   AA   G    R+ GL  L   ++   + K  HVR+SAW+SR+L+ +Q  YA  DA+AS  + R + +
Sbjct:  129 DHLIVGLDVEWNPASGFCALGPVAVLQICVGRRCLVFQIIHADYV-----PDQLGDFLGDGRFTFVGVGIHDDVDKLREHYDLEVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVMYACADAFASFEVGRSLYD 284          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: Q5JND5_ORYSJ (Uncharacterized protein OSJNBb0021A09.19 n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q5JND5_ORYSJ)

HSP 1 Score: 92.0 bits (227), Expect = 1.720e-18
Identity = 54/161 (33.54%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  118 DGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDL-VKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 597
            D  ++G+D+EW  +         A +Q+  G+  +VF+++H   V     PD + D L D      G  I  D  +LR+HY + V++AVDL   AA   G    R+ GL  L   ++   + K  HVR+SAW+SR+L+ +Q  YA  DA+AS  + R + +
Sbjct:  169 DHLIVGLDVEWNPASGFCALGPVAVLQICVGRRCLVFQIIHADYV-----PDQLGDFLGDGRFTFVGVGIHDDVDKLREHYDLEVENAVDLRYLAAQTIGKPALRSTGLQGLVWEVMDVWMEKPHHVRVSAWDSRQLTLDQVMYACADAFASFEVGRSLYD 324          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A4D6NIA3_VIGUN (Werner syndrome ATP-dependent helicase n=2 Tax=Vigna unguiculata TaxID=3917 RepID=A0A4D6NIA3_VIGUN)

HSP 1 Score: 89.4 bits (220), Expect = 3.760e-18
Identity = 56/170 (32.94%), Postives = 88/170 (51.76%), Query Frame = 1
Query:  100 RRAAAADGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAG----CGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILE 597
            R A    G ++G+D+EW  + R   +N  AT+QL  G   +VF+++H   +     P  +A +L + ++   G  I  D  +L + Y +HV +  DL   AA     C     R  GL  L  H+LG  + K + +  S W++R L+ EQ +YAA+DA+ S  I RR+ E
Sbjct:   65 RNAGRRQGLMVGLDVEWRPNTRANMQNPVATLQLCVGHACLVFQIIHSPYI-----PRSLASLLQNPNVTFFGVGIRDDAEKLLRDYDLHVANVCDLRSLAADKIWRC--PHLRQAGLKTLCVHVLGVDVEKPQRISRSFWDNRWLTGEQVQYAAIDAFLSYEIGRRLNE 227          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A0G2HBP8_9EURO (Putative ring finger domain-containing protein n=1 Tax=Phaeomoniella chlamydospora TaxID=158046 RepID=A0A0G2HBP8_9EURO)

HSP 1 Score: 92.8 bits (229), Expect = 4.570e-18
Identity = 64/175 (36.57%), Postives = 91/175 (52.00%), Query Frame = 1
Query:  124 NLIGMDIEWAIS-KRGAP-ENAPATIQLAAGKVVVVFRV----------LHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKA-------AAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRI 591
            N++G D+EW+ S K G P E   + IQLA    +V+F V          L  Q+V   KL   +A +L D ++RK GASI  DCTRL +H G+ V+ A++L            G  V   +   LA+L        L KD+ +RL  W++  LS +   YAA DAYA L ++RR+
Sbjct: 1522 NVVGFDLEWSPSAKIGDPVEKNVSMIQLAGEHCIVLFHVARLFKSGERYLRKQTVLDQKLR-ALASLLKDPNIRKVGASIKADCTRLERHLGIQVQGALELSHLHSQLEYHTGGRQVPDKKATSLANLVQQYFQMQLPKDREIRLHDWSNSSLSLDHISYAAADAYAGLQLYRRM 1695          
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Match: A0A6P6Q611_CARAU (DNA helicase n=7 Tax=Cyprininae TaxID=2743694 RepID=A0A6P6Q611_CARAU)

HSP 1 Score: 92.4 bits (228), Expect = 5.940e-18
Identity = 61/172 (35.47%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  103 RAAAADGNLIGMDIEWAISKRGAPENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGASIGGDCTRLRKHYGVHVKSAVDLVKAAAGCGVDIGRNRGLADLTSHLLGKGLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILELADPIFG 618
            R++ A G+ +G D+EW  S         A +QL A +        H  S+  S  P  +  +L D++++K G  I GD  +L   Y + +KS V+L   A    +  G    L  L  HLL K L KDKHVR S W+  +L+ +Q+RYAA DAYA L I++ + EL     G
Sbjct:   57 RSSLASGSAVGFDLEWPPSFTKGKTKKVAVVQLCASEEKCYL--FHISSM--SGFPPGLKMLLEDENIKKVGVGIEGDKWKLLSDYDIKLKSIVELSDLANET-LRCGEKWSLDGLVKHLLKKQLFKDKHVRCSHWDDYDLTEDQKRYAATDAYAGLLIYQSLQELTSGCSG 223          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11569.1001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE4.970e-6255.503'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6G1C5K1_9ORYZ2.100e-2033.543'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A0E0JIE8_ORYPU1.140e-1933.543'-5' exonuclease domain-containing protein n=7 Ta... [more]
B9FDW5_ORYSJ2.310e-1936.943'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A0E0IQK6_ORYNI9.150e-1936.943'-5' exonuclease domain-containing protein n=8 Ta... [more]
A2ZXL8_ORYSJ9.820e-1933.543'-5' exonuclease domain-containing protein n=4 Ta... [more]
Q5JND5_ORYSJ1.720e-1833.54Uncharacterized protein OSJNBb0021A09.19 n=1 Tax=O... [more]
A0A4D6NIA3_VIGUN3.760e-1832.94Werner syndrome ATP-dependent helicase n=2 Tax=Vig... [more]
A0A0G2HBP8_9EURO4.570e-1836.57Putative ring finger domain-containing protein n=1... [more]
A0A6P6Q611_CARAU5.940e-1835.47DNA helicase n=7 Tax=Cyprininae TaxID=2743694 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11569contigS-dermatodea_contig11569:1084..2019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue3.6e-21
Seed eggNOG ortholog2880.D7G3Q9
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size666
Cds size645
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11569.1001.1prot_S-dermatodea_contig11569.1001.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11569 1105..2019 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924208.5399175-UTR-S-dermatodea_contig11569:1083..11041622924208.5399175-UTR-S-dermatodea_contig11569:1083..1104Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11569 1084..1104 +
1694079093.849938-UTR-S-dermatodea_contig11569:1083..11041694079093.849938-UTR-S-dermatodea_contig11569:1083..1104Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11569 1084..1104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924208.553425-CDS-S-dermatodea_contig11569:1104..16251622924208.553425-CDS-S-dermatodea_contig11569:1104..1625Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11569 1105..1625 +
1694079093.8627203-CDS-S-dermatodea_contig11569:1104..16251694079093.8627203-CDS-S-dermatodea_contig11569:1104..1625Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11569 1105..1625 +
1622924208.566-CDS-S-dermatodea_contig11569:1895..20191622924208.566-CDS-S-dermatodea_contig11569:1895..2019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11569 1896..2019 +
1694079093.870552-CDS-S-dermatodea_contig11569:1895..20191694079093.870552-CDS-S-dermatodea_contig11569:1895..2019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11569 1896..2019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11569.1001.1

>prot_S-dermatodea_contig11569.1001.1 ID=prot_S-dermatodea_contig11569.1001.1|Name=mRNA_S-dermatodea_contig11569.1001.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=215bp
MPEDVSVMVVPAGRTTDVVKAAADKLRRAAAADGNLIGMDIEWAISKRGA
PENAPATIQLAAGKVVVVFRVLHGQSVTPSKLPDPVADILTDKDLRKTGA
SIGGDCTRLRKHYGVHVKSAVDLVKAAAGCGVDIGRNRGLADLTSHLLGK
GLCKDKHVRLSAWNSRELSAEQERYAALDAYASLAIHRRILELADPIFGP
PDELAAGNRVRLYIS
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mRNA from alignment at S-dermatodea_contig11569:1084..2019+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11569.1001.1 ID=mRNA_S-dermatodea_contig11569.1001.1|Name=mRNA_S-dermatodea_contig11569.1001.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=936bp|location=Sequence derived from alignment at S-dermatodea_contig11569:1084..2019+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGTCCCTGCCGCTATTGGAAATGCCAGAGGACGTGAGCGTGATGGTTGT TCCAGCCGGCAGGACGACAGATGTGGTCAAAGCTGCGGCCGACAAGCTCA GGCGTGCAGCTGCCGCTGATGGAAACTTGATTGGAATGGACATTGAGTGG GCGATCTCCAAGCGAGGAGCCCCGGAGAACGCTCCAGCGACAATCCAACT AGCCGCGGGAAAAGTTGTGGTGGTGTTCCGAGTGCTGCACGGTCAATCGG TTACTCCGAGCAAGTTGCCGGATCCCGTCGCCGACATCTTGACGGACAAG GACCTTCGTAAAACTGGCGCTAGCATCGGTGGTGACTGCACACGCCTGCG CAAGCACTACGGCGTGCATGTGAAGAGTGCGGTCGACCTGGTGAAGGCAG CCGCCGGGTGTGGCGTGGATATCGGGCGCAACAGGGGGCTGGCGGACTTG ACTTCGCACTTGCTCGGGAAGGGTCTTTGCAAGGACAAGCACGTCAGGCT GTCGGCATGGAACTCTAGGGAGCTGAGCGCAGAGCAAGAGAGGTCAGTGG GTTATCTGGGTGCAACGTGCGTTATATTCCGGGATTTGTTTTTCTTCGAG TGCGGGGGTTTTTGCGTCCGTTAGAGCTCTAGGTCACCTCGTCGAAATCC TGTCGGCACTTGCGATGAGTTGGGACGGAGTGGCAGGTACAAATATAACC AGTGCTCGTGTTGTTGTGCATCAGATGCTGTTACTACTGTACCTGATGAC GATGCCTTCAACTTGAATATGCCTTCGCTCTCCTTTTTTACCGTATATCC TCGGCTACGTAGGTATGCGGCTCTGGACGCGTATGCGTCTCTGGCTATTC ACCGCCGTATCCTGGAGCTGGCTGACCCGATCTTTGGGCCTCCGGACGAG CTCGCGGCAGGAAACCGTGTTCGCTTGTACATCAGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11569:1084..2019+

>mRNA_S-dermatodea_contig11569.1001.1 ID=mRNA_S-dermatodea_contig11569.1001.1|Name=mRNA_S-dermatodea_contig11569.1001.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at S-dermatodea_contig11569:1084..2019+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCAGAGGACGTGAGCGTGATGGTTGTTCCAGCCGGCAGGACGACAGA
TGTGGTCAAAGCTGCGGCCGACAAGCTCAGGCGTGCAGCTGCCGCTGATG
GAAACTTGATTGGAATGGACATTGAGTGGGCGATCTCCAAGCGAGGAGCC
CCGGAGAACGCTCCAGCGACAATCCAACTAGCCGCGGGAAAAGTTGTGGT
GGTGTTCCGAGTGCTGCACGGTCAATCGGTTACTCCGAGCAAGTTGCCGG
ATCCCGTCGCCGACATCTTGACGGACAAGGACCTTCGTAAAACTGGCGCT
AGCATCGGTGGTGACTGCACACGCCTGCGCAAGCACTACGGCGTGCATGT
GAAGAGTGCGGTCGACCTGGTGAAGGCAGCCGCCGGGTGTGGCGTGGATA
TCGGGCGCAACAGGGGGCTGGCGGACTTGACTTCGCACTTGCTCGGGAAG
GGTCTTTGCAAGGACAAGCACGTCAGGCTGTCGGCATGGAACTCTAGGGA
GCTGAGCGCAGAGCAAGAGAGATGCCAGAGGACGTGAGCGTGATGGTTGT
TCCAGCCGGCAGGACGACAGATGTGGTCAAAGCTGCGGCCGACAAGCTCA
GGCGTGCAGCTGCCGCTGATGGAAACTTGATTGGAATGGACATTGAGTGG
GCGATCTCCAAGCGAGGAGCCCCGGAGAACGCTCCAGCGACAATCCAACT
AGCCGCGGGAAAAGTTGTGGTGGTGTTCCGAGTGCTGCACGGTCAATCGG
TTACTCCGAGCAAGTTGCCGGATCCCGTCGCCGACATCTTGACGGACAAG
GACCTTCGTAAAACTGGCGCTAGCATCGGTGGTGACTGCACACGCCTGCG
CAAGCACTACGGCGTGCATGTGAAGAGTGCGGTCGACCTGGTGAAGGCAG
CCGCCGGGTGTGGCGTGGATATCGGGCGCAACAGGGGGCTGGCGGACTTG
ACTTCGCACTTGCTCGGGAAGGGTCTTTGCAAGGACAAGCACGTCAGGCT
GTCGGCATGGAACTCTAGGGAGCTGAGCGCAGAGCAAGAGAGGTATGCGG
CTCTGGACGCGTATGCGTCTCTGGCTATTCACCGCCGTATCCTGGAGCTG
GCTGACCCGATCTTTGGGCCTCCGGACGAGCTCGCGGCAGGAAACCGTGT
TCGCTTGTACATCAGTGTATGCGGCTCTGGACGCGTATGCGTCTCTGGCT
ATTCACCGCCGTATCCTGGAGCTGGCTGACCCGATCTTTGGGCCTCCGGA
CGAGCTCGCGGCAGGAAACCGTGTTCGCTTGTACATCAGT
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