prot_S-dermatodea_contig11533.986.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11533.986.1
Unique Nameprot_S-dermatodea_contig11533.986.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length305
Homology
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BLAST of mRNA_S-dermatodea_contig11533.986.1 vs. uniprot
Match: A0A6H5JYH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYH5_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.130e-30
Identity = 69/162 (42.59%), Postives = 93/162 (57.41%), Query Frame = 0 
Query:    7 AVDVLRVVALSGAVRPSEMELVCLAVCTACREGGS-YSLVVRPSNAHVLRRAQASSACVSTXXXXXXXXXXXXXXXXXDDISDNQ-----PARAELLEPHRRVWQLAFNLNLPLTRIAWPKDLRVLKFGWAFNHPLEPPMPTSLLEVDLGSGFNRHIEDVDW 162
            A  VLRVV LSG V P+E+ELVCL++C ACRE  + YS+VV   N  +          VS                   DI+ +      PA    + PHRR+ +LAF ++LPL+++ WP+ LR LKFGW F+HPL+ P+P SL+++ LG  FN HIE V W
Sbjct:    6 AAGVLRVVVLSGVVWPAEVELVCLSICNACRESSTNYSMVVTAKNVRL----------VSPSRRQDEGGASSPLPLCGGDINSDSAVPVIPAENSRVLPHRRISRLAFRVDLPLSQVVWPEGLRGLKFGWRFDHPLDHPLPDSLIDLHLGGTFNHHIEGVTW 157
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11533.986.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYH5_9PHAE1.130e-3042.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 114..291
e-value: 1.1E-5
score: 26.0
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 106..225
coord: 233..280
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 106..225
coord: 233..280
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 117..284

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11533contigS-dermatodea_contig11533:4497..5411 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11533.986.1mRNA_S-dermatodea_contig11533.986.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11533 4497..5411 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11533.986.1 ID=prot_S-dermatodea_contig11533.986.1|Name=mRNA_S-dermatodea_contig11533.986.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=305bp
MKDEISAVDVLRVVALSGAVRPSEMELVCLAVCTACREGGSYSLVVRPSN
AHVLRRAQASSACVSTTSISSNSSSSSSSSSSNDDISDNQPARAELLEPH
RRVWQLAFNLNLPLTRIAWPKDLRVLKFGWAFNHPLEPPMPTSLLEVDLG
SGFNRHIEDVDWPPELLKLRFGDKFNRPVELAAWPATLQSLSFGASFNQP
IASVEWPAALEQLSLGDAFNHPVRGVAWRATSLKTLEFGSAFRQPVDGVG
WPSRLKELAFGHCFDQALETRELPRTLEVLRLSDLCEAGPEGYLLAGLPR
GCELR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf