mRNA_S-dermatodea_contig11533.986.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11533.986.1
Unique NamemRNA_S-dermatodea_contig11533.986.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11533.986.1 vs. uniprot
Match: A0A6H5JYH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYH5_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.130e-30
Identity = 69/162 (42.59%), Postives = 93/162 (57.41%), Query Frame = 1 
Query:   19 AVDVLRVVALSGAVRPSEMELVCLAVCTACREGGS-YSLVVRPSNAHVLRRAQASSACVSTXXXXXXXXXXXXXXXXXDDISDNQ-----PARAELLEPHRRVWQLAFNLNLPLTRIAWPKDLRVLKFGWAFNHPLEPPMPTSLLEVDLGSGFNRHIEDVDW 486
            A  VLRVV LSG V P+E+ELVCL++C ACRE  + YS+VV   N  +          VS                   DI+ +      PA    + PHRR+ +LAF ++LPL+++ WP+ LR LKFGW F+HPL+ P+P SL+++ LG  FN HIE V W
Sbjct:    6 AAGVLRVVVLSGVVWPAEVELVCLSICNACRESSTNYSMVVTAKNVRL----------VSPSRRQDEGGASSPLPLCGGDINSDSAVPVIPAENSRVLPHRRISRLAFRVDLPLSQVVWPEGLRGLKFGWRFDHPLDHPLPDSLIDLHLGGTFNHHIEGVTW 157
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11533.986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYH5_9PHAE1.130e-3042.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11533contigS-dermatodea_contig11533:4497..5411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004590.1
Exons1
Model size915
Cds size915
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924207.35342-CDS-S-dermatodea_contig11533:4496..54111622924207.35342-CDS-S-dermatodea_contig11533:4496..5411Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11533 4497..5411 -
1694079093.0214128-CDS-S-dermatodea_contig11533:4496..54111694079093.0214128-CDS-S-dermatodea_contig11533:4496..5411Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11533 4497..5411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11533.986.1prot_S-dermatodea_contig11533.986.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11533 4497..5411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11533.986.1

>prot_S-dermatodea_contig11533.986.1 ID=prot_S-dermatodea_contig11533.986.1|Name=mRNA_S-dermatodea_contig11533.986.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=305bp
MKDEISAVDVLRVVALSGAVRPSEMELVCLAVCTACREGGSYSLVVRPSN
AHVLRRAQASSACVSTTSISSNSSSSSSSSSSNDDISDNQPARAELLEPH
RRVWQLAFNLNLPLTRIAWPKDLRVLKFGWAFNHPLEPPMPTSLLEVDLG
SGFNRHIEDVDWPPELLKLRFGDKFNRPVELAAWPATLQSLSFGASFNQP
IASVEWPAALEQLSLGDAFNHPVRGVAWRATSLKTLEFGSAFRQPVDGVG
WPSRLKELAFGHCFDQALETRELPRTLEVLRLSDLCEAGPEGYLLAGLPR
GCELR
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mRNA from alignment at S-dermatodea_contig11533:4497..5411-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11533.986.1 ID=mRNA_S-dermatodea_contig11533.986.1|Name=mRNA_S-dermatodea_contig11533.986.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=915bp|location=Sequence derived from alignment at S-dermatodea_contig11533:4497..5411- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGGACGAAATCAGCGCCGTCGACGTCCTGCGCGTGGTCGCCCTGTC
CGGCGCCGTCCGCCCCTCTGAGATGGAGCTGGTTTGCCTTGCCGTCTGCA
CCGCCTGCCGAGAGGGCGGTAGCTACTCCCTCGTCGTCAGGCCTAGTAAC
GCCCACGTCCTGCGCCGGGCACAAGCATCCTCGGCCTGTGTAAGCACCAC
CAGCATCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACG
ATGACATCAGCGACAACCAGCCCGCAAGGGCGGAGCTGCTGGAGCCGCAC
CGCCGGGTCTGGCAACTAGCCTTCAACCTAAACTTACCGCTGACGCGAAT
CGCCTGGCCCAAAGACCTGCGGGTGCTCAAGTTCGGGTGGGCGTTCAATC
ACCCCCTCGAACCCCCCATGCCGACTTCCCTGCTCGAGGTAGACCTTGGC
AGCGGCTTCAACCGCCACATTGAGGACGTCGATTGGCCGCCCGAGCTGCT
GAAGCTCCGCTTCGGGGACAAGTTCAACCGCCCCGTCGAGCTCGCGGCGT
GGCCCGCGACGCTCCAGAGCCTCTCGTTCGGCGCTTCGTTCAACCAGCCT
ATTGCCTCGGTCGAGTGGCCCGCCGCCCTGGAGCAGCTCTCCCTCGGAGA
CGCCTTCAACCACCCGGTGCGTGGGGTGGCCTGGAGAGCGACGAGCCTAA
AGACGCTGGAGTTTGGCTCTGCATTTCGCCAGCCCGTTGACGGCGTGGGG
TGGCCATCGAGGCTCAAGGAGCTGGCGTTTGGGCACTGCTTCGACCAGGC
GCTGGAGACGCGCGAACTTCCTCGCACCCTAGAAGTGCTCCGATTGTCGG
ACCTCTGCGAGGCGGGCCCCGAGGGGTACCTGTTGGCGGGGCTGCCGCGC
GGGTGCGAGCTGCGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig11533:4497..5411-

>mRNA_S-dermatodea_contig11533.986.1 ID=mRNA_S-dermatodea_contig11533.986.1|Name=mRNA_S-dermatodea_contig11533.986.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1830bp|location=Sequence derived from alignment at S-dermatodea_contig11533:4497..5411- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAAGGACGAAATCAGCGCCGTCGACGTCCTGCGCGTGGTCGCCCTGTC
CGGCGCCGTCCGCCCCTCTGAGATGGAGCTGGTTTGCCTTGCCGTCTGCA
CCGCCTGCCGAGAGGGCGGTAGCTACTCCCTCGTCGTCAGGCCTAGTAAC
GCCCACGTCCTGCGCCGGGCACAAGCATCCTCGGCCTGTGTAAGCACCAC
CAGCATCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACG
ATGACATCAGCGACAACCAGCCCGCAAGGGCGGAGCTGCTGGAGCCGCAC
CGCCGGGTCTGGCAACTAGCCTTCAACCTAAACTTACCGCTGACGCGAAT
CGCCTGGCCCAAAGACCTGCGGGTGCTCAAGTTCGGGTGGGCGTTCAATC
ACCCCCTCGAACCCCCCATGCCGACTTCCCTGCTCGAGGTAGACCTTGGC
AGCGGCTTCAACCGCCACATTGAGGACGTCGATTGGCCGCCCGAGCTGCT
GAAGCTCCGCTTCGGGGACAAGTTCAACCGCCCCGTCGAGCTCGCGGCGT
GGCCCGCGACGCTCCAGAGCCTCTCGTTCGGCGCTTCGTTCAACCAGCCT
ATTGCCTCGGTCGAGTGGCCCGCCGCCCTGGAGCAGCTCTCCCTCGGAGA
CGCCTTCAACCACCCGGTGCGTGGGGTGGCCTGGAGAGCGACGAGCCTAA
AGACGCTGGAGTTTGGCTCTGCATTTCGCCAGCCCGTTGACGGCGTGGGG
TGGCCATCGAGGCTCAAGGAGCTGGCGTTTGGGCACTGCTTCGACCAGGC
GCTGGAGACGCGCGAACTTCCTCGCACCCTAGAAGTGCTCCGATTGTCGG
ACCTCTGCGAGGCGGGCCCCGAGGGGTACCTGTTGGCGGGGCTGCCGCGC
GGGTGCGAGCTGCGCATGAAGGACGAAATCAGCGCCGTCGACGTCCTGCG
CGTGGTCGCCCTGTCCGGCGCCGTCCGCCCCTCTGAGATGGAGCTGGTTT
GCCTTGCCGTCTGCACCGCCTGCCGAGAGGGCGGTAGCTACTCCCTCGTC
GTCAGGCCTAGTAACGCCCACGTCCTGCGCCGGGCACAAGCATCCTCGGC
CTGTGTAAGCACCACCAGCATCAGCAGCAACAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAACGATGACATCAGCGACAACCAGCCCGCAAGGGCGGAG
CTGCTGGAGCCGCACCGCCGGGTCTGGCAACTAGCCTTCAACCTAAACTT
ACCGCTGACGCGAATCGCCTGGCCCAAAGACCTGCGGGTGCTCAAGTTCG
GGTGGGCGTTCAATCACCCCCTCGAACCCCCCATGCCGACTTCCCTGCTC
GAGGTAGACCTTGGCAGCGGCTTCAACCGCCACATTGAGGACGTCGATTG
GCCGCCCGAGCTGCTGAAGCTCCGCTTCGGGGACAAGTTCAACCGCCCCG
TCGAGCTCGCGGCGTGGCCCGCGACGCTCCAGAGCCTCTCGTTCGGCGCT
TCGTTCAACCAGCCTATTGCCTCGGTCGAGTGGCCCGCCGCCCTGGAGCA
GCTCTCCCTCGGAGACGCCTTCAACCACCCGGTGCGTGGGGTGGCCTGGA
GAGCGACGAGCCTAAAGACGCTGGAGTTTGGCTCTGCATTTCGCCAGCCC
GTTGACGGCGTGGGGTGGCCATCGAGGCTCAAGGAGCTGGCGTTTGGGCA
CTGCTTCGACCAGGCGCTGGAGACGCGCGAACTTCCTCGCACCCTAGAAG
TGCTCCGATTGTCGGACCTCTGCGAGGCGGGCCCCGAGGGGTACCTGTTG
GCGGGGCTGCCGCGCGGGTGCGAGCTGCGC
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