prot_S-dermatodea_contig11434.929.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11434.929.1
Unique Nameprot_S-dermatodea_contig11434.929.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length101
Homology
BLAST of mRNA_S-dermatodea_contig11434.929.1 vs. uniprot
Match: D7FLZ6_ECTSI (Eukaryotic translation initiation factor 4C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ6_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.320e-66
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0
Query:    1 MLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDGI 100
            MLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFD I
Sbjct:   41 MLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDEI 140          
BLAST of mRNA_S-dermatodea_contig11434.929.1 vs. uniprot
Match: A0A7S2UW94_9STRA (Eukaryotic translation initiation factor 4C n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2UW94_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.480e-63
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0
Query:    1 MLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDGI 100
            MLGNGR EC+CYDG+TRLGHIRGKMRKKVWVSAGDIVLVG RDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVD+AMEGDGA+DDIGIDFD I
Sbjct:   41 MLGNGRCECFCYDGITRLGHIRGKMRKKVWVSAGDIVLVGLRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDIAMEGDGADDDIGIDFDDI 140          
BLAST of mRNA_S-dermatodea_contig11434.929.1 vs. uniprot
Match: B5YN42_THAPS (Eukaryotic translation initiation factor 4C n=2 Tax=Thalassiosira TaxID=35127 RepID=B5YN42_THAPS)

HSP 1 Score: 181 bits (458), Expect = 7.500e-57
Identity = 84/100 (84.00%), Postives = 94/100 (94.00%), Query Frame = 0
Query:    1 MLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDGI 100
            MLGNGR EC+CYDGVTRLGHIRGKMRKKVW++AGDIVLVGKRD+QD+KVDI+H+Y+ADEARNLKQYGELPE ARINETAVD AM G+G +DDIGIDFD I
Sbjct:   41 MLGNGRCECFCYDGVTRLGHIRGKMRKKVWITAGDIVLVGKRDFQDEKVDILHKYSADEARNLKQYGELPETARINETAVDQAMAGEGDDDDIGIDFDDI 140          
BLAST of mRNA_S-dermatodea_contig11434.929.1 vs. uniprot
Match: B7FP79_PHATC (Eukaryotic translation initiation factor 4C (Fragment) n=6 Tax=Bacillariophycidae TaxID=33850 RepID=B7FP79_PHATC)

HSP 1 Score: 177 bits (449), Expect = 1.500e-55
Identity = 82/100 (82.00%), Postives = 93/100 (93.00%), Query Frame = 0
Query:    1 MLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDGI 100
            MLGNGR EC+C+DGVTRLGHIRGKMRKKVW++AGDIVLV KRD+QD+KVDI+H+Y+ADEARNLKQYGELPE ARINETAVD+AM GD  +DDIGIDFD I
Sbjct:   36 MLGNGRCECFCFDGVTRLGHIRGKMRKKVWITAGDIVLVAKRDFQDEKVDIVHKYSADEARNLKQYGELPETARINETAVDMAMAGDENDDDIGIDFDDI 135          
BLAST of mRNA_S-dermatodea_contig11434.929.1 vs. uniprot
Match: A0A7S2A929_TRICV (Eukaryotic translation initiation factor 4C n=10 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S2A929_TRICV)

HSP 1 Score: 177 bits (450), Expect = 2.420e-55
Identity = 84/100 (84.00%), Postives = 92/100 (92.00%), Query Frame = 0
Query:    1 MLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDGI 100
            MLGNGR EC+C+DGVTRLGHIRGKMRKKVWV+AGDIVLVGKRD+QD+KVDI+H+Y ADEARNLKQYGELPE ARINETAVDLAM  +  EDDIGIDFD I
Sbjct:   62 MLGNGRCECFCFDGVTRLGHIRGKMRKKVWVTAGDIVLVGKRDFQDEKVDILHKYTADEARNLKQYGELPETARINETAVDLAMTTEDGEDDIGIDFDDI 161          
BLAST of mRNA_S-dermatodea_contig11434.929.1 vs. uniprot
Match: A0A7S2WRV7_9STRA (Eukaryotic translation initiation factor 4C n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2WRV7_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.500e-55
Identity = 86/100 (86.00%), Postives = 90/100 (90.00%), Query Frame = 0
Query:    1 MLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDGI 100
            MLGNGR ECYC+DG TRLGHIRGKMRKKVWVSAGDIVLVG R++QDDKVDIIH+YNADEARNLK YGELPE ARINETAVDLAMEG    DDIGIDFD I
Sbjct:   41 MLGNGRCECYCFDGQTRLGHIRGKMRKKVWVSAGDIVLVGLREFQDDKVDIIHKYNADEARNLKTYGELPETARINETAVDLAMEGGDEVDDIGIDFDEI 140          
BLAST of mRNA_S-dermatodea_contig11434.929.1 vs. uniprot
Match: K0RYS9_THAOC (Eukaryotic translation initiation factor 4C n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RYS9_THAOC)

HSP 1 Score: 172 bits (437), Expect = 6.100e-54
Identity = 81/100 (81.00%), Postives = 91/100 (91.00%), Query Frame = 0
Query:    1 MLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDGI 100
            MLGNGR EC+CYDGVTRLGHIRGKMRKK+W++AGDIVLVGKRD+QD+KVDI+H+Y+ADEARNLKQYGELPE ARINETAVD AM     +DDIGIDFD I
Sbjct:   20 MLGNGRCECFCYDGVTRLGHIRGKMRKKIWITAGDIVLVGKRDFQDEKVDILHKYSADEARNLKQYGELPETARINETAVDQAMGFANDDDDIGIDFDDI 119          
BLAST of mRNA_S-dermatodea_contig11434.929.1 vs. uniprot
Match: K3WDU9_GLOUD (Eukaryotic translation initiation factor 4C n=28 Tax=Oomycota TaxID=4762 RepID=K3WDU9_GLOUD)

HSP 1 Score: 163 bits (412), Expect = 7.160e-50
Identity = 78/100 (78.00%), Postives = 88/100 (88.00%), Query Frame = 0
Query:    1 MLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDGI 100
            MLGNGR E YC+DGVTRLGHIRGKMRKKVWV AGDI+LV  R+YQD KVDIIH+YNADEAR+LK YGELP++ARINET VD+AMEGD  +DDIG +FD I
Sbjct:   41 MLGNGRLEAYCFDGVTRLGHIRGKMRKKVWVGAGDIILVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETTVDMAMEGD--DDDIGFEFDDI 138          
BLAST of mRNA_S-dermatodea_contig11434.929.1 vs. uniprot
Match: W7TWV5_9STRA (Eukaryotic translation initiation factor 4C n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWV5_9STRA)

HSP 1 Score: 161 bits (407), Expect = 4.540e-49
Identity = 77/101 (76.24%), Postives = 88/101 (87.13%), Query Frame = 0
Query:    1 MLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDG-AEDDIGIDFDGI 100
            MLGNGR E YC+DG  RL HIRGKMRKKVWVSAGDIVL+G RDYQ+DKVDIIH+YNADEARNLK +GELPE A+INETA+DL +EG   +ED+IG+DFD I
Sbjct:   41 MLGNGRCEVYCFDGKNRLAHIRGKMRKKVWVSAGDIVLLGMRDYQEDKVDIIHKYNADEARNLKAFGELPETAKINETAIDLTLEGGSDSEDEIGVDFDEI 141          
BLAST of mRNA_S-dermatodea_contig11434.929.1 vs. uniprot
Match: W4GJ99_9STRA (Eukaryotic translation initiation factor 4C n=8 Tax=Saprolegniaceae TaxID=4764 RepID=W4GJ99_9STRA)

HSP 1 Score: 156 bits (395), Expect = 3.050e-47
Identity = 76/100 (76.00%), Postives = 85/100 (85.00%), Query Frame = 0
Query:    1 MLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVDIIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDGI 100
            MLGNGR E YCYDGVTRLGHIRGKMRKKVWV  GDIVLV  R+YQD KVDIIH+YNADEAR+LK YGELP++ARINET+VD  M+G G +DD G +FD I
Sbjct:   44 MLGNGRLEAYCYDGVTRLGHIRGKMRKKVWVGVGDIVLVSLREYQDGKVDIIHKYNADEARSLKAYGELPDNARINETSVD--MDGAGDDDDCGFEFDDI 141          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11434.929.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLZ6_ECTSI1.320e-6699.00Eukaryotic translation initiation factor 4C n=1 Ta... [more]
A0A7S2UW94_9STRA1.480e-6393.00Eukaryotic translation initiation factor 4C n=2 Ta... [more]
B5YN42_THAPS7.500e-5784.00Eukaryotic translation initiation factor 4C n=2 Ta... [more]
B7FP79_PHATC1.500e-5582.00Eukaryotic translation initiation factor 4C (Fragm... [more]
A0A7S2A929_TRICV2.420e-5584.00Eukaryotic translation initiation factor 4C n=10 T... [more]
A0A7S2WRV7_9STRA2.500e-5586.00Eukaryotic translation initiation factor 4C n=3 Ta... [more]
K0RYS9_THAOC6.100e-5481.00Eukaryotic translation initiation factor 4C n=1 Ta... [more]
K3WDU9_GLOUD7.160e-5078.00Eukaryotic translation initiation factor 4C n=28 T... [more]
W7TWV5_9STRA4.540e-4976.24Eukaryotic translation initiation factor 4C n=2 Ta... [more]
W4GJ99_9STRA3.050e-4776.00Eukaryotic translation initiation factor 4C n=8 Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001253Translation initiation factor 1A (eIF-1A)SMARTSM00652eIF1neu4coord: 1..70
e-value: 1.3E-29
score: 114.4
IPR001253Translation initiation factor 1A (eIF-1A)PANTHERPTHR21668EIF-1Acoord: 1..85
IPR006196RNA-binding domain, S1, IF1 typePFAMPF01176eIF-1acoord: 1..54
e-value: 6.8E-19
score: 67.4
IPR006196RNA-binding domain, S1, IF1 typePROSITEPS50832S1_IF1_TYPEcoord: 1..56
score: 26.097
NoneNo IPR availableGENE3D2.40.50.140coord: 1..99
e-value: 3.9E-35
score: 122.4
NoneNo IPR availablePRODOMPD005579coord: 13..69
e-value: 6.0E-18
score: 216.0
IPR018104Translation initiation factor 1A (eIF-1A), conserved sitePROSITEPS01262IF1Acoord: 1..23
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 1..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11434contigS-dermatodea_contig11434:2006..4318 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11434.929.1mRNA_S-dermatodea_contig11434.929.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11434 1897..5829 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11434.929.1 ID=prot_S-dermatodea_contig11434.929.1|Name=mRNA_S-dermatodea_contig11434.929.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MLGNGRAECYCYDGVTRLGHIRGKMRKKVWVSAGDIVLVGKRDYQDDKVD
IIHRYNADEARNLKQYGELPEHARINETAVDLAMEGDGAEDDIGIDFDGI
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001253TIF_eIF-1A
IPR006196RNA-binding_domain_S1_IF1
IPR018104TIF_eIF-1A_CS
IPR012340NA-bd_OB-fold