prot_S-dermatodea_contig1141.911.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1141.911.1
Unique Nameprot_S-dermatodea_contig1141.911.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length122
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1141.911.1 vs. uniprot
Match: D8LKL9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL9_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 7.500e-28
Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = 0 
Query:    1 VHQLTAHFATGQTPLSSAEMLEMLAAVAPQMYDNVTLPEAIERSLTPMGGRLLVAQLGQAYPAFAGGVCGFFLLDLAKSAHRLAAVRLAEAENLQHR 97
            V  L    A G   L+SAEML+M+AAV+PQ++DN  LP+ IER+L+PMG ++L  QLGQAYPAF GGV G FLLDL  S HRLAAVRLAEAEN Q R
Sbjct:  683 VQWLIEQLAGGPNVLNSAEMLKMMAAVSPQLFDNTGLPDLIERNLSPMGRKMLEVQLGQAYPAFTGGVSGPFLLDLRFSRHRLAAVRLAEAENFQTR 779
[Close]
BLAST of mRNA_S-dermatodea_contig1141.911.1 vs. uniprot
Match: A0A6H5K9H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.150e-9
Identity = 43/93 (46.24%), Postives = 48/93 (51.61%), Query Frame = 0 
Query:    5 TAHFATGQTPLSSAEMLEMLAAVAPQMYDNVTLPEAIERSLTPMGGRLLVAQLGQAYPAFAGGVCGFFLLDLAKSAHRLAAVRLAEAENLQHR 97
            T   A G   L+SAEML+++AAV+PQ Y                             PAF GGV G FLLDL  S HRLAAVRLAEAEN Q R
Sbjct:  571 TNQLAGGPNALNSAEMLKIMAAVSPQTY-----------------------------PAFTGGVSGPFLLDLRFSRHRLAAVRLAEAENFQTR 634
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1141.911.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKL9_ECTSI7.500e-2863.92Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K9H7_9PHAE4.150e-946.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableTMHMMTMhelixcoord: 52..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1141contigS-dermatodea_contig1141:6194..8058 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1141.911.1mRNA_S-dermatodea_contig1141.911.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1141 6192..8058 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1141.911.1 ID=prot_S-dermatodea_contig1141.911.1|Name=mRNA_S-dermatodea_contig1141.911.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=122bp
VHQLTAHFATGQTPLSSAEMLEMLAAVAPQMYDNVTLPEAIERSLTPMGG
RLLVAQLGQAYPAFAGGVCGFFLLDLAKSAHRLAAVRLAEAENLQHRRRQ
FADHEKDGDDENTGVLRLWPGF
back to top