mRNA_S-dermatodea_contig1141.911.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1141.911.1
Unique NamemRNA_S-dermatodea_contig1141.911.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1141.911.1 vs. uniprot
Match: D8LKL9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL9_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 7.500e-28
Identity = 62/97 (63.92%), Postives = 73/97 (75.26%), Query Frame = 1 
Query:    1 VHQLTAHFATGQTPLSSAEMLEMLAAVAPQMYDNVTLPEAIERSLTPMGGRLLVAQLGQAYPAFAGGVCGFFLLDLAKSAHRLAAVRLAEAENLQHR 291
            V  L    A G   L+SAEML+M+AAV+PQ++DN  LP+ IER+L+PMG ++L  QLGQAYPAF GGV G FLLDL  S HRLAAVRLAEAEN Q R
Sbjct:  683 VQWLIEQLAGGPNVLNSAEMLKMMAAVSPQLFDNTGLPDLIERNLSPMGRKMLEVQLGQAYPAFTGGVSGPFLLDLRFSRHRLAAVRLAEAENFQTR 779
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BLAST of mRNA_S-dermatodea_contig1141.911.1 vs. uniprot
Match: A0A6H5K9H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.150e-9
Identity = 43/93 (46.24%), Postives = 48/93 (51.61%), Query Frame = 1 
Query:   13 TAHFATGQTPLSSAEMLEMLAAVAPQMYDNVTLPEAIERSLTPMGGRLLVAQLGQAYPAFAGGVCGFFLLDLAKSAHRLAAVRLAEAENLQHR 291
            T   A G   L+SAEML+++AAV+PQ Y                             PAF GGV G FLLDL  S HRLAAVRLAEAEN Q R
Sbjct:  571 TNQLAGGPNALNSAEMLKIMAAVSPQTY-----------------------------PAFTGGVSGPFLLDLRFSRHRLAAVRLAEAENFQTR 634
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1141.911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKL9_ECTSI7.500e-2863.92Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5K9H7_9PHAE4.150e-946.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1141contigS-dermatodea_contig1141:6192..8058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue5.3e-25
Seed eggNOG ortholog2880.D8LKL9
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size369
Cds size366
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1141.911.1prot_S-dermatodea_contig1141.911.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1141 6194..8058 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924201.8904247-CDS-S-dermatodea_contig1141:6193..62691622924201.8904247-CDS-S-dermatodea_contig1141:6193..6269Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 6194..6269 -
1694079088.827986-CDS-S-dermatodea_contig1141:6193..62691694079088.827986-CDS-S-dermatodea_contig1141:6193..6269Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 6194..6269 -
1622924201.9005127-CDS-S-dermatodea_contig1141:6788..69011622924201.9005127-CDS-S-dermatodea_contig1141:6788..6901Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 6789..6901 -
1694079088.8393948-CDS-S-dermatodea_contig1141:6788..69011694079088.8393948-CDS-S-dermatodea_contig1141:6788..6901Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 6789..6901 -
1622924201.9137404-CDS-S-dermatodea_contig1141:7499..75861622924201.9137404-CDS-S-dermatodea_contig1141:7499..7586Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 7500..7586 -
1694079088.8471174-CDS-S-dermatodea_contig1141:7499..75861694079088.8471174-CDS-S-dermatodea_contig1141:7499..7586Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 7500..7586 -
1622924201.9324248-CDS-S-dermatodea_contig1141:7968..80581622924201.9324248-CDS-S-dermatodea_contig1141:7968..8058Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 7969..8058 -
1694079088.8570588-CDS-S-dermatodea_contig1141:7968..80581694079088.8570588-CDS-S-dermatodea_contig1141:7968..8058Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1141 7969..8058 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1141.911.1

>prot_S-dermatodea_contig1141.911.1 ID=prot_S-dermatodea_contig1141.911.1|Name=mRNA_S-dermatodea_contig1141.911.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=122bp
VHQLTAHFATGQTPLSSAEMLEMLAAVAPQMYDNVTLPEAIERSLTPMGG
RLLVAQLGQAYPAFAGGVCGFFLLDLAKSAHRLAAVRLAEAENLQHRRRQ
FADHEKDGDDENTGVLRLWPGF
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mRNA from alignment at S-dermatodea_contig1141:6192..8058-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1141.911.1 ID=mRNA_S-dermatodea_contig1141.911.1|Name=mRNA_S-dermatodea_contig1141.911.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1867bp|location=Sequence derived from alignment at S-dermatodea_contig1141:6192..8058- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCATCAGCTGACGGCACACTTTGCTACTGGTCAGACACCGTTAAGCTC
TGCCGAGATGCTCGAAATGCTGGCCGCTGTAGCGCCCCAGGTACGGACAT
CAAGCGAGCAGAGCGGTCCGGAGTATATTTTTGTGGTTTTCGTTGTGGAC
AGGCAGAGCGAGCAGATTGAAAAGAGGAACGTAAAGAAAGGTGCATGCGC
TAGCAAGCCGTGGTTCAAATGCGTGTGAAATGACGACACAAACGTGTAGC
TTCTCGTCAAGCGCGTACTGCGTTTGACGCCCGCGGCCACCGTGTGGGTG
GCTCCATGAATCTACTTAAATAACTTTAATCGGCCCAAAGGCGTCAACCG
TTAGCTCGATACTGTAATCGATGCTCTTTCGCGGTTTTGTTATCATGCGG
CGCGAGCAAGCGTGATCGCTCTCCTACCCTATTGTCCCTTGTGTGGTGCT
TGTTTTGCACTTCTGCCCTAAGATGTACGATAACGTCACGCTACCGGAAG
CGATCGAGCGCAGCTTGACTCCAATGGGGGGAAGGCTTCTCGTGGCCCAG
CTTGGACAGGTAAGCACATTGGCCAAGTTAACACCTTCGAAACTACGTGC
AGCACACTGCACGTTGAATGCAAACCGTGTCGGATGTCAATCCCTGTTGT
GAGACATCACACATGTCCTGCGGTTGTCTTTGATCAATCACGAACCCCAT
CACCGGCACTACCATGGTAGGCAAGGAGGTATACCCTGCGCTGCGCAAGT
AGTTTTGTCGTTCAAACCAATCCCTACCCCAATTCAGCTGCGGCGTTTCA
CCCTCATCAGGTTAGAGACACAGACGTTGCTTGGTAGAAATGAGTGTACG
AGCAAGTGTAGTCAAGGGGGCGATATCTGGAGTTCTACGAAAGTTGGCGG
GGATGGTAAGGATGATCAAAACAACGAGTTAGGCAGCGCGTATCATACTT
GTATACGGCTGACGCGCTCGCACTATTTAGTGCCTCCGGGAGGGAGGGAG
GGCTTCAACACATCTGCAGAACAACACACATATCGCGTGGTCTCTAGGCT
TCGTATTTCATTGTTGTTGCACGTCAATAAATTACCCAACAGCTAAAGCA
TGCAAAACTTGAGTGCCCCCCACCCCTCGCTTCATATCACAACGACGTAT
TTTGGAGGCCTATCCGGCTTTCGCAGGGGGCGTATGTGGCTTCTTCTTGT
TGGATCTGGCGAAAAGCGCACATCGCCTGGCCGCCGTCCGACTGGCCGAG
GCCGAGAACCTTCAGCATAGGTGAGCTAGAGGAGGGGTTTCGCCTGCCGC
AGCTTTAGATTCTGTCAAGGGCATGAAACTGGTTTATTTGAAGCCTCCAA
AATAGGAGAGAGCTGCGTGTGTGTGTGTGTATGTGTGTGTGTGTGTTTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTATATCGTTTACCACCATAAGCTGTTTGAGCTTGCATCA
GTAGCCTGCATCAGTAGTCGGGCGCGAAAAGACGATTGGGCTCCACTCGG
ACGACGAAACTCGCGCCTGTTCAAGAGAGACGGACAAATCGAAAACTGTT
TTTTCCACGTTATACGGCAAACATTCCGCACGACGCAAAACAATCAGACC
TGGAATACGTCCCGCTGCACGGGATGCCCACGCAACATCTGCCTTACCCG
CGTAATTTGCTTTACTCCCATGAAGTTGTGACGGCGCTCGATTGCGCCCG
ATGTCTTGTTACGTAAGCCCTCTTCCTTCTTTCAAGCAGGCGCCGGCAGT
TCGCGGACCACGAGAAAGATGGCGACGATGAAAACACGGGTGTGTTGCGT
CTTTGGCCAGGCTTCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1141:6192..8058-

>mRNA_S-dermatodea_contig1141.911.1 ID=mRNA_S-dermatodea_contig1141.911.1|Name=mRNA_S-dermatodea_contig1141.911.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at S-dermatodea_contig1141:6192..8058- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCCATCAGCTGACGGCACACTTTGCTACTGGTCAGACACCGTTAAGCTC
TGCCGAGATGCTCGAAATGCTGGCCGCTGTAGCGCCCCAGGTCCATCAGC
TGACGGCACACTTTGCTACTGGTCAGACACCGTTAAGCTCTGCCGAGATG
CTCGAAATGCTGGCCGCTGTAGCGCCCCAGATGTACGATAACGTCACGCT
ACCGGAAGCGATCGAGCGCAGCTTGACTCCAATGGGGGGAAGGCTTCTCG
TGGCCCAGCTTGGACAGATGTACGATAACGTCACGCTACCGGAAGCGATC
GAGCGCAGCTTGACTCCAATGGGGGGAAGGCTTCTCGTGGCCCAGCTTGG
ACAGGCCTATCCGGCTTTCGCAGGGGGCGTATGTGGCTTCTTCTTGTTGG
ATCTGGCGAAAAGCGCACATCGCCTGGCCGCCGTCCGACTGGCCGAGGCC
GAGAACCTTCAGCATAGGCCTATCCGGCTTTCGCAGGGGGCGTATGTGGC
TTCTTCTTGTTGGATCTGGCGAAAAGCGCACATCGCCTGGCCGCCGTCCG
ACTGGCCGAGGCCGAGAACCTTCAGCATAGGCGCCGGCAGTTCGCGGACC
ACGAGAAAGATGGCGACGATGAAAACACGGGTGTGTTGCGTCTTTGGCCA
GGCTTCGCGCCGGCAGTTCGCGGACCACGAGAAAGATGGCGACGATGAAA
ACACGGGTGTGTTGCGTCTTTGGCCAGGCTTC
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