prot_S-dermatodea_contig11275.813.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11275.813.1
Unique Nameprot_S-dermatodea_contig11275.813.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length34
Homology
BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: D7FV68_ECTSI (Probable chromatin remodelling complex ATPase chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV68_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.950e-9
Identity = 29/34 (85.29%), Postives = 30/34 (88.24%), Query Frame = 0
Query:    1 MDRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR 34
            MDRAHRIGQKRPVSVYRLVTENTVEEKV  R  +
Sbjct:  676 MDRAHRIGQKRPVSVYRLVTENTVEEKVVERAQQ 709          
BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A5Q4VBM6_9DELT (DEAD/DEAH box helicase n=1 Tax=Desulfobotulus mexicanus TaxID=2586642 RepID=A0A5Q4VBM6_9DELT)

HSP 1 Score: 51.6 bits (122), Expect = 6.520e-8
Identity = 22/27 (81.48%), Postives = 27/27 (100.00%), Query Frame = 0
Query:    2 DRAHRIGQKRPVSVYRLVTENTVEEKV 28
            DRAHRIGQ+RPV++YRLVT+NTVEEK+
Sbjct:   10 DRAHRIGQQRPVTIYRLVTKNTVEEKI 36          
BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A353XZS4_9GAMM (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A353XZS4_9GAMM)

HSP 1 Score: 51.6 bits (122), Expect = 1.360e-7
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 0
Query:    1 MDRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR 34
            MDRAHRIGQ+ PV VY+L+TENTVEEK+ A   R
Sbjct:   20 MDRAHRIGQENPVFVYKLITENTVEEKILAMQER 53          
BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A6S6S6A7_9BACT (COG0553: Superfamily II DNA/RNA helicases, SNF2 family n=2 Tax=Aureispira TaxID=365032 RepID=A0A6S6S6A7_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.560e-7
Identity = 23/27 (85.19%), Postives = 27/27 (100.00%), Query Frame = 0
Query:    2 DRAHRIGQKRPVSVYRLVTENTVEEKV 28
            DRAHRIGQKRPV+VYRL+TENT+EEK+
Sbjct: 1310 DRAHRIGQKRPVTVYRLITENTIEEKI 1336          
BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A1V4X1V8_9DELT (Helicase C-terminal domain-containing protein n=1 Tax=Syntrophus sp. PtaB.Bin001 TaxID=1811710 RepID=A0A1V4X1V8_9DELT)

HSP 1 Score: 52.0 bits (123), Expect = 1.580e-7
Identity = 22/27 (81.48%), Postives = 27/27 (100.00%), Query Frame = 0
Query:    2 DRAHRIGQKRPVSVYRLVTENTVEEKV 28
            DRAHRIGQ+RPV+VYRLVT+NT+EEK+
Sbjct:   48 DRAHRIGQRRPVTVYRLVTKNTIEEKI 74          
BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A7S4NH32_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NH32_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.130e-7
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0
Query:    2 DRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR 34
            DR HR+GQK+PVSVYRLVTENTVEEK+  R  +
Sbjct:  712 DRCHRLGQKKPVSVYRLVTENTVEEKIVERAQQ 744          
BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A0G4G977_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G977_VITBC)

HSP 1 Score: 53.9 bits (128), Expect = 2.130e-7
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 0
Query:    1 MDRAHRIGQKRPVSVYRLVTENTVEEKVPARCS 33
            MDRAHRIGQK+PV+VYRLV ENT+EEKV  R +
Sbjct:  569 MDRAHRIGQKKPVNVYRLVHENTIEEKVIERAN 601          
BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A7S4NFM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NFM4_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.140e-7
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0
Query:    2 DRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR 34
            DR HR+GQK+PVSVYRLVTENTVEEK+  R  +
Sbjct:  317 DRCHRLGQKKPVSVYRLVTENTVEEKIVERAQQ 349          
BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: F0Y4E7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4E7_AURAN)

HSP 1 Score: 53.9 bits (128), Expect = 2.140e-7
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 0
Query:    1 MDRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR 34
            MDRAHRIGQK+PV VYRLVT NT+EEK+  R  +
Sbjct:  550 MDRAHRIGQKKPVHVYRLVTANTIEEKIVERAKK 583          
BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A378UA01_MYCFO (Conserved protein of uncharacterized function, possibly SNF2-related n=1 Tax=Mycolicibacterium fortuitum TaxID=1766 RepID=A0A378UA01_MYCFO)

HSP 1 Score: 52.8 bits (125), Expect = 2.260e-7
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0
Query:    1 MDRAHRIGQKRPVSVYRLVTENTVEEKVPA 30
            +DRAHRIGQ RPVSVYRLV ENT+EEKV A
Sbjct:  109 VDRAHRIGQVRPVSVYRLVAENTIEEKVVA 138          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV68_ECTSI1.950e-985.29Probable chromatin remodelling complex ATPase chai... [more]
A0A5Q4VBM6_9DELT6.520e-881.48DEAD/DEAH box helicase n=1 Tax=Desulfobotulus mexi... [more]
A0A353XZS4_9GAMM1.360e-770.59Helicase C-terminal domain-containing protein (Fra... [more]
A0A6S6S6A7_9BACT1.560e-785.19COG0553: Superfamily II DNA/RNA helicases, SNF2 fa... [more]
A0A1V4X1V8_9DELT1.580e-781.48Helicase C-terminal domain-containing protein n=1 ... [more]
A0A7S4NH32_9STRA2.130e-772.73Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A0G4G977_VITBC2.130e-775.76Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S4NFM4_9STRA2.140e-772.73Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
F0Y4E7_AURAN2.140e-770.59Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A378UA01_MYCFO2.260e-783.33Conserved protein of uncharacterized function, pos... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..34
e-value: 1.5E-13
score: 52.5
NoneNo IPR availablePANTHERPTHR10799:SF879SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A MEMBER 5coord: 1..31
NoneNo IPR availablePANTHERPTHR10799SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATEDcoord: 1..31
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11275contigS-dermatodea_contig11275:2140..2241 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11275.813.1mRNA_S-dermatodea_contig11275.813.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11275 2140..2256 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11275.813.1 ID=prot_S-dermatodea_contig11275.813.1|Name=mRNA_S-dermatodea_contig11275.813.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=34bp
MDRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase