mRNA_S-dermatodea_contig11275.813.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11275.813.1
Unique NamemRNA_S-dermatodea_contig11275.813.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: D7FV68_ECTSI (Probable chromatin remodelling complex ATPase chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV68_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.760e-12
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 ADLQAMDRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR 117
            ADLQAMDRAHRIGQKRPVSVYRLVTENTVEEKV  R  +
Sbjct:  671 ADLQAMDRAHRIGQKRPVSVYRLVTENTVEEKVVERAQQ 709
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BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A7S4NH32_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NH32_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.170e-10
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ADLQAMDRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR 117
            ADLQA DR HR+GQK+PVSVYRLVTENTVEEK+  R  +
Sbjct:  706 ADLQAQDRCHRLGQKKPVSVYRLVTENTVEEKIVERAQQ 744
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BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A7S4NFM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NFM4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.190e-10
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ADLQAMDRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR 117
            ADLQA DR HR+GQK+PVSVYRLVTENTVEEK+  R  +
Sbjct:  311 ADLQAQDRCHRLGQKKPVSVYRLVTENTVEEKIVERAQQ 349
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BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: F0Y4E7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4E7_AURAN)

HSP 1 Score: 61.6 bits (148), Expect = 5.190e-10
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ADLQAMDRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR 117
            ADLQAMDRAHRIGQK+PV VYRLVT NT+EEK+  R  +
Sbjct:  545 ADLQAMDRAHRIGQKKPVHVYRLVTANTIEEKIVERAKK 583
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BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A7S2LE64_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LE64_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.650e-10
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ADLQAMDRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR 117
            ADLQA DR HRIGQK+PV++YRLVTENTVEEK+  R  +
Sbjct:  690 ADLQAQDRVHRIGQKKPVNIYRLVTENTVEEKIVERAQQ 728
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BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A7K7KZA0_9AVES (SMCA1 protein (Fragment) n=73 Tax=Neognathae TaxID=8825 RepID=A0A7K7KZA0_9AVES)

HSP 1 Score: 57.8 bits (138), Expect = 1.590e-9
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    4 DLQAMDRAHRIGQKRPVSVYRLVTENTVEEKVPAR 108
            DLQAMDRAHRIGQK+PV V+RL+T+NTVEE++  R
Sbjct:   78 DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVER 112
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BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A4D9CV79_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV79_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.800e-9
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ADLQAMDRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR 117
            ADLQA DRAHRIGQKRPV++YRLVT+ T+EEK+  R  +
Sbjct:  677 ADLQAQDRAHRIGQKRPVNIYRLVTQGTIEEKIVERAQK 715
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BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: K8YUK2_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YUK2_NANGC)

HSP 1 Score: 60.1 bits (144), Expect = 1.810e-9
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ADLQAMDRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR 117
            ADLQA DRAHRIGQKRPV++YRLVT+ T+EEK+  R  +
Sbjct:  695 ADLQAQDRAHRIGQKRPVNIYRLVTQGTIEEKIVERAQK 733
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BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A7S2LVA9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LVA9_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.810e-9
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 ADLQAMDRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR 117
            ADLQA DR HR+GQK+PVSV+RLVTENTVEEK+  R  +
Sbjct:  534 ADLQAQDRCHRLGQKKPVSVFRLVTENTVEEKIVERAQQ 572
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BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Match: A0A0G4G977_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G977_VITBC)

HSP 1 Score: 60.1 bits (144), Expect = 1.810e-9
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    4 DLQAMDRAHRIGQKRPVSVYRLVTENTVEEKVPARCS 114
            DLQAMDRAHRIGQK+PV+VYRLV ENT+EEKV  R +
Sbjct:  565 DLQAMDRAHRIGQKKPVNVYRLVHENTIEEKVIERAN 601
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11275.813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV68_ECTSI4.760e-1287.18Probable chromatin remodelling complex ATPase chai... [more]
A0A7S4NH32_9STRA5.170e-1074.36Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A7S4NFM4_9STRA5.190e-1074.36Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
F0Y4E7_AURAN5.190e-1074.36Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2LE64_9STRA9.650e-1071.79Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7K7KZA0_9AVES1.590e-974.29SMCA1 protein (Fragment) n=73 Tax=Neognathae TaxID... [more]
A0A4D9CV79_9STRA1.800e-969.23Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YUK2_NANGC1.810e-969.23Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2LVA9_9STRA1.810e-971.79Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A0G4G977_VITBC1.810e-978.38Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11275contigS-dermatodea_contig11275:2140..2256 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size102
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.3259745-CDS-S-dermatodea_contig11275:2139..22411622924194.3259745-CDS-S-dermatodea_contig11275:2139..2241Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11275 2140..2241 -
1694079083.2954345-CDS-S-dermatodea_contig11275:2139..22411694079083.2954345-CDS-S-dermatodea_contig11275:2139..2241Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11275 2140..2241 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924194.3380916-UTR-S-dermatodea_contig11275:2241..22561622924194.3380916-UTR-S-dermatodea_contig11275:2241..2256Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11275 2242..2256 -
1694079083.3052757-UTR-S-dermatodea_contig11275:2241..22561694079083.3052757-UTR-S-dermatodea_contig11275:2241..2256Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11275 2242..2256 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11275.813.1prot_S-dermatodea_contig11275.813.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11275 2140..2241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11275.813.1

>prot_S-dermatodea_contig11275.813.1 ID=prot_S-dermatodea_contig11275.813.1|Name=mRNA_S-dermatodea_contig11275.813.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=34bp
MDRAHRIGQKRPVSVYRLVTENTVEEKVPARCSR
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mRNA from alignment at S-dermatodea_contig11275:2140..2256-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11275.813.1 ID=mRNA_S-dermatodea_contig11275.813.1|Name=mRNA_S-dermatodea_contig11275.813.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=117bp|location=Sequence derived from alignment at S-dermatodea_contig11275:2140..2256- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGATTTGCAGGCAATGGACCGGGCGCACCGCATCGGACAGAAGCGGCC
GGTTAGCGTCTACCGCCTCGTGACCGAGAACACGGTAGAGGAGAAGGTGC
CCGCGCGTTGCTCTCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig11275:2140..2256-

>mRNA_S-dermatodea_contig11275.813.1 ID=mRNA_S-dermatodea_contig11275.813.1|Name=mRNA_S-dermatodea_contig11275.813.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=204bp|location=Sequence derived from alignment at S-dermatodea_contig11275:2140..2256- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACCGGGCGCACCGCATCGGACAGAAGCGGCCGGTTAGCGTCTACCG
CCTCGTGACCGAGAACACGGTAGAGGAGAAGGTGCCCGCGCGTTGCTCTC
GGATGGACCGGGCGCACCGCATCGGACAGAAGCGGCCGGTTAGCGTCTAC
CGCCTCGTGACCGAGAACACGGTAGAGGAGAAGGTGCCCGCGCGTTGCTC
TCGG
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