prot_S-dermatodea_contig11225.789.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11225.789.1
Unique Nameprot_S-dermatodea_contig11225.789.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length157
Homology
BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 1.290e-91
Identity = 145/151 (96.03%), Postives = 148/151 (98.01%), Query Frame = 0
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 151
            VVITSGTLSPLDLYPKLLGF PVVRTAL+MSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMI+LA IVPDGVVCFFTSYSYME IVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGA+FLSVARGKV
Sbjct:  497 VVITSGTLSPLDLYPKLLGFSPVVRTALSMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIELAAIVPDGVVCFFTSYSYMEMIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAIFLSVARGKV 647          
BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A7S3Y1X9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1X9_HETAK)

HSP 1 Score: 254 bits (649), Expect = 5.300e-81
Identity = 121/151 (80.13%), Postives = 137/151 (90.73%), Query Frame = 0
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 151
            VVITSGTLSP+DLYPKLLGF+PVVR +L MS  R CICP+VVTRGSDQ+P+STKFD R+D SVVRNYG L+I+LAG  PDG+V FF SY YME I++KWDE+GVL++VLEKKL+FIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV
Sbjct:   72 VVITSGTLSPIDLYPKLLGFRPVVRRSLPMSIARPCICPMVVTRGSDQVPISTKFDTREDSSVVRNYGGLLIELAGCTPDGIVAFFPSYLYMEKIIAKWDEIGVLRKVLEKKLVFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 222          
BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 250 bits (639), Expect = 1.840e-75
Identity = 120/151 (79.47%), Postives = 136/151 (90.07%), Query Frame = 0
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 151
            VVITSGTLSP+DLYPKLL F PVVR++L MST R+CICPLVVTRGSDQL +STKFD R+DPSVVRNYG+L+I+LA  +PDG+VCFFTSYSYME IV++W E GVL +V EKKLIF+ETKDVVETTLALDNFKRACD GRGA+F SVARGKV
Sbjct:  500 VVITSGTLSPIDLYPKLLNFHPVVRSSLPMSTFRRCICPLVVTRGSDQLAISTKFDLREDPSVVRNYGSLIIELAAAIPDGIVCFFTSYSYMERIVAQWQESGVLSKVYEKKLIFLETKDVVETTLALDNFKRACDSGRGAIFFSVARGKV 650          
BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A392M3U0_9FABA (DNA repair helicase UVH6-like n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M3U0_9FABA)

HSP 1 Score: 231 bits (588), Expect = 1.030e-74
Identity = 104/151 (68.87%), Postives = 129/151 (85.43%), Query Frame = 0
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 151
            VVITSGTL P+DLYP+LL F PVV  + TMS  R CICP+V+TRGSDQLP+STKFD R D  VVRNYG L++++A +VPDG+VCFF SYSYM+ IV+ W+E G+LK +++ KL+FIET+DVVETTLALDN+++ACDCGRGA+F SVARGKV
Sbjct:   30 VVITSGTLCPMDLYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMASVVPDGIVCFFVSYSYMDGIVNSWNENGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAIFFSVARGKV 180          
BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A446JMA2_TRITD (HELICc2 domain-containing protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446JMA2_TRITD)

HSP 1 Score: 234 bits (596), Expect = 1.770e-74
Identity = 106/151 (70.20%), Postives = 130/151 (86.09%), Query Frame = 0
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 151
            VVITSGTLSP+DLYP+LL F PV+  + TMS  R CICP+V+TRGSDQLP+STKFD R DP VVRNYG L++++A  VPDGVVCFF SYSYM+ IV+ W+E+G+L+ +++ KL+FIET DVVETTLALDN+++ACDCGRGAVF SVARGKV
Sbjct:  102 VVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASSVPDGVVCFFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFFSVARGKV 252          
BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A7C9E1G5_OPUST (HELICc2 domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9E1G5_OPUST)

HSP 1 Score: 233 bits (595), Expect = 1.650e-73
Identity = 105/151 (69.54%), Postives = 129/151 (85.43%), Query Frame = 0
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 151
            VVITSGTLSP+DLYP+LL F PVV  + TMS  R CICP+V+TRGSDQLP+STK+D R DP V RNYG L++++  +VPDG+VCFF SYSYM+ IV+ W+E G+LK +++ KL+FIET+DVVETTLALDN++RACDCGRGAVF SVARGKV
Sbjct:   72 VVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKYDMRSDPGVARNYGRLLLEMVSVVPDGIVCFFVSYSYMDAIVNTWNETGILKDIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVARGKV 222          
BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A7J9GF11_9ROSI (DNA helicase n=1 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9GF11_9ROSI)

HSP 1 Score: 235 bits (599), Expect = 1.730e-73
Identity = 105/151 (69.54%), Postives = 130/151 (86.09%), Query Frame = 0
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 151
            VVITSGTLSP+DLYP+LL F PVV  + TMS  R CICP+V+TRGSDQLP+STKFD R DP VVRNYG L++++  +VPDG+VCFF SYSYM+ I++ W++ G+LK +++ KL+FIET+DVVETTLALDN++RACDCGRGAVF SVARGKV
Sbjct:  186 VVITSGTLSPIDLYPRLLNFHPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLLEMVSVVPDGIVCFFVSYSYMDGIINTWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVARGKV 336          
BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A830CDY5_9LAMI (DNA repair helicase uvh6 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CDY5_9LAMI)

HSP 1 Score: 231 bits (589), Expect = 1.740e-73
Identity = 105/151 (69.54%), Postives = 128/151 (84.77%), Query Frame = 0
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 151
            VVITSGTLSP+DLYP+LL F PVV  + TMS  R CICP+V+TRGSDQLP+STK+D R DP V +NYG L++++  +VPDGVVCFF SYSYM+ IV+ W E G+LK +++ KL+FIET+DVVETTLALDN++RACDCGRGAVF SVARGKV
Sbjct:   56 VVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKYDLRSDPGVEKNYGKLLLEMVSVVPDGVVCFFVSYSYMDGIVNSWHESGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVARGKV 206          
BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A452XYN9_AEGTS (HELICc2 domain-containing protein n=4 Tax=Poaceae TaxID=4479 RepID=A0A452XYN9_AEGTS)

HSP 1 Score: 233 bits (595), Expect = 1.740e-73
Identity = 105/151 (69.54%), Postives = 130/151 (86.09%), Query Frame = 0
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 151
            VVITSGTLSP+DLYP+LL F PV+  + TMS  R CICP+V+TRGSDQLP+STKFD R DP VVRNYG L++++A  VPDG+VCFF SYSYM+ IV+ W+E+G+L+ +++ KL+FIET DVVETTLALDN+++ACDCGRGAVF SVARGKV
Sbjct:  102 VVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASSVPDGIVCFFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFFSVARGKV 252          
BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A087GZK3_ARAAL (HELICc2 domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087GZK3_ARAAL)

HSP 1 Score: 231 bits (589), Expect = 8.870e-73
Identity = 106/151 (70.20%), Postives = 128/151 (84.77%), Query Frame = 0
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 151
            VVITSGTLSP+DLYP+LL F PVV  +  MS  R CICP+V+TRGSDQLP+STKFD R DP VVRNYG L++++  IVPDGVVCFF SYSYM+ I++ W E G+LK ++++KL+FIET+DVVETTLALDN++RACD GRGAVF SVARGKV
Sbjct:   60 VVITSGTLSPIDLYPRLLSFNPVVSRSFKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFVSYSYMDGIIATWSETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDRGRGAVFFSVARGKV 210          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI1.290e-9196.03General transcription and DNA repair factor IIH he... [more]
A0A7S3Y1X9_HETAK5.300e-8180.13Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CJZ4_9STRA1.840e-7579.47General transcription and DNA repair factor IIH he... [more]
A0A392M3U0_9FABA1.030e-7468.87DNA repair helicase UVH6-like n=1 Tax=Trifolium me... [more]
A0A446JMA2_TRITD1.770e-7470.20HELICc2 domain-containing protein n=2 Tax=Triticum... [more]
A0A7C9E1G5_OPUST1.650e-7369.54HELICc2 domain-containing protein n=1 Tax=Opuntia ... [more]
A0A7J9GF11_9ROSI1.730e-7369.54DNA helicase n=1 Tax=Gossypium harknessii TaxID=34... [more]
A0A830CDY5_9LAMI1.740e-7369.54DNA repair helicase uvh6 n=1 Tax=Phtheirospermum j... [more]
A0A452XYN9_AEGTS1.740e-7369.54HELICc2 domain-containing protein n=4 Tax=Poaceae ... [more]
A0A087GZK3_ARAAL8.870e-7370.20HELICc2 domain-containing protein n=1 Tax=Arabis a... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006555ATP-dependent helicase, C-terminalPFAMPF13307Helicase_C_2coord: 73..151
e-value: 1.2E-10
score: 41.8
NoneNo IPR availableGENE3D3.40.50.300coord: 47..152
e-value: 3.7E-10
score: 41.7
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 1..151
IPR001945RAD3/XPD familyPANTHERPTHR11472:SF1GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPDcoord: 1..151

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11225contigS-dermatodea_contig11225:168..5557 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11225.789.1mRNA_S-dermatodea_contig11225.789.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11225 168..5557 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11225.789.1 ID=prot_S-dermatodea_contig11225.789.1|Name=mRNA_S-dermatodea_contig11225.789.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=157bp
VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLP
MSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWD
ELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGK
VRLTKQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006555ATP-dep_Helicase_C
IPR001945RAD3/XPD