mRNA_S-dermatodea_contig11225.789.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11225.789.1
Unique NamemRNA_S-dermatodea_contig11225.789.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 1.290e-91
Identity = 145/151 (96.03%), Postives = 148/151 (98.01%), Query Frame = 1 
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 453
            VVITSGTLSPLDLYPKLLGF PVVRTAL+MSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMI+LA IVPDGVVCFFTSYSYME IVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGA+FLSVARGKV
Sbjct:  497 VVITSGTLSPLDLYPKLLGFSPVVRTALSMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIELAAIVPDGVVCFFTSYSYMEMIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAIFLSVARGKV 647
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BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A7S3Y1X9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1X9_HETAK)

HSP 1 Score: 254 bits (649), Expect = 5.300e-81
Identity = 121/151 (80.13%), Postives = 137/151 (90.73%), Query Frame = 1 
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 453
            VVITSGTLSP+DLYPKLLGF+PVVR +L MS  R CICP+VVTRGSDQ+P+STKFD R+D SVVRNYG L+I+LAG  PDG+V FF SY YME I++KWDE+GVL++VLEKKL+FIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV
Sbjct:   72 VVITSGTLSPIDLYPKLLGFRPVVRRSLPMSIARPCICPMVVTRGSDQVPISTKFDTREDSSVVRNYGGLLIELAGCTPDGIVAFFPSYLYMEKIIAKWDEIGVLRKVLEKKLVFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 222
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BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 250 bits (639), Expect = 1.840e-75
Identity = 120/151 (79.47%), Postives = 136/151 (90.07%), Query Frame = 1 
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 453
            VVITSGTLSP+DLYPKLL F PVVR++L MST R+CICPLVVTRGSDQL +STKFD R+DPSVVRNYG+L+I+LA  +PDG+VCFFTSYSYME IV++W E GVL +V EKKLIF+ETKDVVETTLALDNFKRACD GRGA+F SVARGKV
Sbjct:  500 VVITSGTLSPIDLYPKLLNFHPVVRSSLPMSTFRRCICPLVVTRGSDQLAISTKFDLREDPSVVRNYGSLIIELAAAIPDGIVCFFTSYSYMERIVAQWQESGVLSKVYEKKLIFLETKDVVETTLALDNFKRACDSGRGAIFFSVARGKV 650
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BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A392M3U0_9FABA (DNA repair helicase UVH6-like n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M3U0_9FABA)

HSP 1 Score: 231 bits (588), Expect = 1.030e-74
Identity = 104/151 (68.87%), Postives = 129/151 (85.43%), Query Frame = 1 
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 453
            VVITSGTL P+DLYP+LL F PVV  + TMS  R CICP+V+TRGSDQLP+STKFD R D  VVRNYG L++++A +VPDG+VCFF SYSYM+ IV+ W+E G+LK +++ KL+FIET+DVVETTLALDN+++ACDCGRGA+F SVARGKV
Sbjct:   30 VVITSGTLCPMDLYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMASVVPDGIVCFFVSYSYMDGIVNSWNENGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAIFFSVARGKV 180
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BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A446JMA2_TRITD (HELICc2 domain-containing protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446JMA2_TRITD)

HSP 1 Score: 234 bits (596), Expect = 1.770e-74
Identity = 106/151 (70.20%), Postives = 130/151 (86.09%), Query Frame = 1 
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 453
            VVITSGTLSP+DLYP+LL F PV+  + TMS  R CICP+V+TRGSDQLP+STKFD R DP VVRNYG L++++A  VPDGVVCFF SYSYM+ IV+ W+E+G+L+ +++ KL+FIET DVVETTLALDN+++ACDCGRGAVF SVARGKV
Sbjct:  102 VVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASSVPDGVVCFFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFFSVARGKV 252
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BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A7C9E1G5_OPUST (HELICc2 domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9E1G5_OPUST)

HSP 1 Score: 233 bits (595), Expect = 1.650e-73
Identity = 105/151 (69.54%), Postives = 129/151 (85.43%), Query Frame = 1 
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 453
            VVITSGTLSP+DLYP+LL F PVV  + TMS  R CICP+V+TRGSDQLP+STK+D R DP V RNYG L++++  +VPDG+VCFF SYSYM+ IV+ W+E G+LK +++ KL+FIET+DVVETTLALDN++RACDCGRGAVF SVARGKV
Sbjct:   72 VVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKYDMRSDPGVARNYGRLLLEMVSVVPDGIVCFFVSYSYMDAIVNTWNETGILKDIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVARGKV 222
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BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A7J9GF11_9ROSI (DNA helicase n=1 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9GF11_9ROSI)

HSP 1 Score: 235 bits (599), Expect = 1.730e-73
Identity = 105/151 (69.54%), Postives = 130/151 (86.09%), Query Frame = 1 
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 453
            VVITSGTLSP+DLYP+LL F PVV  + TMS  R CICP+V+TRGSDQLP+STKFD R DP VVRNYG L++++  +VPDG+VCFF SYSYM+ I++ W++ G+LK +++ KL+FIET+DVVETTLALDN++RACDCGRGAVF SVARGKV
Sbjct:  186 VVITSGTLSPIDLYPRLLNFHPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLLEMVSVVPDGIVCFFVSYSYMDGIINTWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVARGKV 336
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BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A830CDY5_9LAMI (DNA repair helicase uvh6 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CDY5_9LAMI)

HSP 1 Score: 231 bits (589), Expect = 1.740e-73
Identity = 105/151 (69.54%), Postives = 128/151 (84.77%), Query Frame = 1 
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 453
            VVITSGTLSP+DLYP+LL F PVV  + TMS  R CICP+V+TRGSDQLP+STK+D R DP V +NYG L++++  +VPDGVVCFF SYSYM+ IV+ W E G+LK +++ KL+FIET+DVVETTLALDN++RACDCGRGAVF SVARGKV
Sbjct:   56 VVITSGTLSPIDLYPRLLNFNPVVSRSFTMSLTRDCICPMVLTRGSDQLPVSTKYDLRSDPGVEKNYGKLLLEMVSVVPDGVVCFFVSYSYMDGIVNSWHESGILKEIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVARGKV 206
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BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A452XYN9_AEGTS (HELICc2 domain-containing protein n=4 Tax=Poaceae TaxID=4479 RepID=A0A452XYN9_AEGTS)

HSP 1 Score: 233 bits (595), Expect = 1.740e-73
Identity = 105/151 (69.54%), Postives = 130/151 (86.09%), Query Frame = 1 
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 453
            VVITSGTLSP+DLYP+LL F PV+  + TMS  R CICP+V+TRGSDQLP+STKFD R DP VVRNYG L++++A  VPDG+VCFF SYSYM+ IV+ W+E+G+L+ +++ KL+FIET DVVETTLALDN+++ACDCGRGAVF SVARGKV
Sbjct:  102 VVITSGTLSPIDLYPRLLNFNPVISRSFTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGRLLLEMASSVPDGIVCFFVSYSYMDGIVNSWNEMGILQDIMQHKLVFIETPDVVETTLALDNYRKACDCGRGAVFFSVARGKV 252
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BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Match: A0A087GZK3_ARAAL (HELICc2 domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087GZK3_ARAAL)

HSP 1 Score: 231 bits (589), Expect = 8.870e-73
Identity = 106/151 (70.20%), Postives = 128/151 (84.77%), Query Frame = 1 
Query:    1 VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLPMSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWDELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGKV 453
            VVITSGTLSP+DLYP+LL F PVV  +  MS  R CICP+V+TRGSDQLP+STKFD R DP VVRNYG L++++  IVPDGVVCFF SYSYM+ I++ W E G+LK ++++KL+FIET+DVVETTLALDN++RACD GRGAVF SVARGKV
Sbjct:   60 VVITSGTLSPIDLYPRLLSFNPVVSRSFKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFVSYSYMDGIIATWSETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDRGRGAVFFSVARGKV 210
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11225.789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI1.290e-9196.03General transcription and DNA repair factor IIH he... [more]
A0A7S3Y1X9_HETAK5.300e-8180.13Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CJZ4_9STRA1.840e-7579.47General transcription and DNA repair factor IIH he... [more]
A0A392M3U0_9FABA1.030e-7468.87DNA repair helicase UVH6-like n=1 Tax=Trifolium me... [more]
A0A446JMA2_TRITD1.770e-7470.20HELICc2 domain-containing protein n=2 Tax=Triticum... [more]
A0A7C9E1G5_OPUST1.650e-7369.54HELICc2 domain-containing protein n=1 Tax=Opuntia ... [more]
A0A7J9GF11_9ROSI1.730e-7369.54DNA helicase n=1 Tax=Gossypium harknessii TaxID=34... [more]
A0A830CDY5_9LAMI1.740e-7369.54DNA repair helicase uvh6 n=1 Tax=Phtheirospermum j... [more]
A0A452XYN9_AEGTS1.740e-7369.54HELICc2 domain-containing protein n=4 Tax=Poaceae ... [more]
A0A087GZK3_ARAAL8.870e-7370.20HELICc2 domain-containing protein n=1 Tax=Arabis a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11225contigS-dermatodea_contig11225:168..5557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.0
Seed ortholog evalue1.7e-76
Seed eggNOG ortholog2880.D8LDN2
Preferred nameERCC2
KEGG koko:K10844
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
GOsGO:0000018,GO:0000019,GO:0000109,GO:0000112,GO:0000166,GO:0000428,GO:0000439,GO:0000717,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0001503,GO:0001701,GO:0001942,GO:0002244,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0005694,GO:0005700,GO:0005703,GO:0005705,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007272,GO:0007275,GO:0007346,GO:0007348,GO:0007399,GO:0007417,GO:0007568,GO:0008022,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008366,GO:0008544,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009650,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009794,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009913,GO:0009987,GO:0010001,GO:0010389,GO:0010467,GO:0010468,GO:0010525,GO:0010528,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010927,GO:0010948,GO:0010972,GO:0012501,GO:0014003,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0021510,GO:0021700,GO:0021782,GO:0022008,GO:0022010,GO:0022402,GO:0022404,GO:0022405,GO:0022607,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030198,GO:0030218,GO:0030282,GO:0030554,GO:0030855,GO:0030880,GO:0031214,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032288,GO:0032289,GO:0032291,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032806,GO:0032989,GO:0032991,GO:0033043,GO:0033554,GO:0033683,GO:0034101,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035315,GO:0035639,GO:0036094,GO:0036211,GO:0036260,GO:0040007,GO:0040016,GO:0042063,GO:0042303,GO:0042552,GO:0042592,GO:0042623,GO:0042633,GO:0043009,GO:0043062,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043249,GO:0043254,GO:0043388,GO:0043412,GO:0043588,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045786,GO:0045893,GO:0045911,GO:0045930,GO:0045935,GO:0045944,GO:0045951,GO:0045995,GO:0046483,GO:0047485,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048646,GO:0048699,GO:0048709,GO:0048731,GO:0048820,GO:0048821,GO:0048856,GO:0048863,GO:0048869,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051716,GO:0051726,GO:0051783,GO:0051983,GO:0055029,GO:0060218,GO:0060255,GO:0060429,GO:0061515,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070816,GO:0070911,GO:0071103,GO:0071695,GO:0071704,GO:0071817,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097367,GO:0097659,GO:0098687,GO:0098773,GO:0140097,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902554,GO:1902680,GO:1902749,GO:1902750,GO:1902911,GO:1903506,GO:1903508,GO:1990234,GO:1990391,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1131@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size471
Cds size471
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11225.789.1prot_S-dermatodea_contig11225.789.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11225 168..5557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924192.6428754-CDS-S-dermatodea_contig11225:167..2811622924192.6428754-CDS-S-dermatodea_contig11225:167..281Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11225 168..281 -
1694079082.1241803-CDS-S-dermatodea_contig11225:167..2811694079082.1241803-CDS-S-dermatodea_contig11225:167..281Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11225 168..281 -
1622924192.652205-CDS-S-dermatodea_contig11225:739..8331622924192.652205-CDS-S-dermatodea_contig11225:739..833Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11225 740..833 -
1694079082.1345534-CDS-S-dermatodea_contig11225:739..8331694079082.1345534-CDS-S-dermatodea_contig11225:739..833Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11225 740..833 -
1622924192.6658733-CDS-S-dermatodea_contig11225:3980..41121622924192.6658733-CDS-S-dermatodea_contig11225:3980..4112Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11225 3981..4112 -
1694079082.1424844-CDS-S-dermatodea_contig11225:3980..41121694079082.1424844-CDS-S-dermatodea_contig11225:3980..4112Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11225 3981..4112 -
1622924192.6824713-CDS-S-dermatodea_contig11225:5426..55571622924192.6824713-CDS-S-dermatodea_contig11225:5426..5557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11225 5427..5557 -
1694079082.1500487-CDS-S-dermatodea_contig11225:5426..55571694079082.1500487-CDS-S-dermatodea_contig11225:5426..5557Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11225 5427..5557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11225.789.1

>prot_S-dermatodea_contig11225.789.1 ID=prot_S-dermatodea_contig11225.789.1|Name=mRNA_S-dermatodea_contig11225.789.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=157bp
VVITSGTLSPLDLYPKLLGFQPVVRTALTMSTVRKCICPLVVTRGSDQLP
MSTKFDQRDDPSVVRNYGALMIDLAGIVPDGVVCFFTSYSYMEHIVSKWD
ELGVLKRVLEKKLIFIETKDVVETTLALDNFKRACDCGRGAVFLSVARGK
VRLTKQ*
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mRNA from alignment at S-dermatodea_contig11225:168..5557-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11225.789.1 ID=mRNA_S-dermatodea_contig11225.789.1|Name=mRNA_S-dermatodea_contig11225.789.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5390bp|location=Sequence derived from alignment at S-dermatodea_contig11225:168..5557- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGTGATCACCTCCGGGACGCTCTCTCCTCTCGACCTGTACCCCAAGCT
CCTGGGGTTCCAGCCAGTGGTGCGGACCGCGTTGACGATGTCCACGGTCA
GGAAGTGCATCTGCCCGCTGGTCGTTACCAGGTTAGACACTCGATCGTGT
TTCGTTTGGGCGATGCAAGAGGGGGGGAGGGTGTGCGATACAGTGGGGTT
TTCAGGACTCAAATCTATGTTTTGGGTGTTGTATTTTTATCATCTCGACG
GCTGCCGCGGGGGGGGGGGGGGATGGCAGTAGCACCTTACCGCTTACTCG
TCTACACGCGGTGAGCTTACATTCAATCTTGACGGGCTCTCTCGCGCGGC
TTACGTCGGACCTTGGCTTGATTCTGATTCTGCTATGCTCATTTCCGTGG
AGTGCAGGATTGTGCCGGGTGTTTTGCGGTAGGTTACGGCTGTTTCGAAC
CAACTGCGTCTGTTTCACCGCCGCTGTTCATTATTTAGTATGGTGTTCCG
AGCCCAAAAGAGCAAATCGTCATTGCCGGAAGAGGTCATTTTATGCTCTG
TGGATTGCGCCAAGCCAAAACAACCCCTAGAAGCGATGGCTGCAGTGCAT
GAAGATTGGCTATATGCATAATATACACTGTCCATCATGGGTGTGGACAG
GCAAAGCCAATGACGGCTCTTCCCACCAACACTACAGTAAACCTGTCTAG
GACAACTCAATACACCAAAAATTATCGACACGCTGGCAACTGCTGCCGCC
CTGCGATGGTCGTGGTACAGTATCAACTACTCATAGCGTTCGCCGCGTGT
CCACGCACCCGCTCATTTATCGCCCTGGTTTGTCCACCTTACCCTCTACC
CCGACCGCCACGCCTCCATACCGTAAACTCCCTACTTAACGCCTACTACC
CTCCAGCACGCAGCCAAAATGCGATTATATTTTGCTACCCGCTCGTCGAT
ACCAAAGCACAGCACCTCAGGTACCGTACCGGATCCGAACGCTCTCGAGG
AGGCCCTGCCGCCCAAGTAGATAATCTTGGCTTAACCCTTTTGGGACTAA
GGCTGTTTTCGGGTTACTGTTTGCTGTTACTACATACCCTTTTGTTTTGG
TACTAACGATGTTTCGGGTGACTGTTTGCTATTATGGTAGCCAACAGTTA
TCCGAAAACAGGCTTCGTCCTCAGGCTTAGTCCGAAAAGGGCAAATAATA
AAAGCAAACAGTTACCCGAAAACAGCCTTAGTCCCAAAAGGGTTAAGTTT
ATCAGGAGGTGCTCGCCTCTGAACATCGTTAAAAAAATCAACAGGTTCTC
TAGTCCGGCTTCTTCGTCTACGTTGACGACAGGCCGACGTGTTGCAGGCG
CGAGAATAGGGTTGCCTCCATTGGCCTAAAAGTTTGGCTTTTCTTACGCG
AGGCACCCGCGGTCGCCCTTAATTTGCTATTTGTTGTCGAGGCAGGGGTT
CGGACCAGCTTCCGATGAGCACGAAGTTCGACCAGAGAGATGACCCCTCC
GTTGTGCGAAACTACGGAGCGCTGATGATCGACCTTGCCGGCATCGTCCC
TGATGGAGTGGTCTGCTTCTTCACCAGGTAATGCGGCGGCACGCAATAGT
CAGAACCACATATTTGTTACCCCTTTTGGTACTATACTATTAATAGTATA
ATAGTACTCCGGAGTATTAATATATTGCTAATAGTACAACTCTCCGAAAC
GACCAAAAACTCTCTCGATGCCAGTCGACAGCTACGACAGTCTCGGTTCC
CTTGGGCTAATTTCTTTCTCATATCCTGCGCCATAAGCCGTGGGTTCCGT
TCCCCAGGGCTCCGCTTCAAGCACGCCTCATTACGTGCTAACCGCCGCTC
CAAACAGGAGGCTAGTACCAAAAGGGTTCATGAATTCCACGTTGAAGCTT
TTTGTTTTTGTAATAACGATTCAGAGTTGAACAAAAGACCAATCCTTTAT
GTATGTACGATTAGTGTGAAAACTCAAATCCTACACAATTCTTGATGCCA
AATTGTGAGGCCACGACCTTGATTTTAGACAAGACGCACGCCTCACGGGC
GTATAGCCGTGGCTACCTGCTAGTTTATGCTCAATACAATAGTAGCAGCG
TATTCAAGTGTACTGTTTTATTAACGTTGGCCTCAACTCAACATCCACCT
TGTGTTTTTTTTGTTTTTTGAAGTTTTTATTGGTAACTGTATTTCAGGAT
GCAAGAAGATTGCAGATTATATTGTGAGGCCAGACCATATAAGTTTATGG
TGTGCTGTGCTGGGTACTACTGTACGTGCGTTTTGGCATATTTGGTCCTG
ACTACTCTCTAACTCCGCACTAGTATTGGTATGTTTGCCCGATGGAGTTT
TTTTTGTGTTTGTTTGTCTTTTTGCACACGTATAGCCGATCGGCTTAGTC
CGACCCGACTTGTGGTCAGATACGCAAAGAGTCAAGGAAAAAATTAACTA
ATCAGGACTATACTTCTACTATACACCGTACCGTCCCTGGTACATGCTAT
GTTACATTTATTTTTATTTTTATTTGATTTGCACAAGTATAGCCGATCGG
CTTAATCCAACCCGACTTGTGGTCAGAAGAAATAAGAAATAGTACCTACC
CCAGATATAGAAAAACGCTAGAAAATAACTCCGACTCAGACGGTGCTCCC
CCGCCTCTCCACAGGTCCTTATTGTACTACGGCCAGTTGCAACGCGGCAG
GGACATCAGTATAAGAGTTAGAGCAGATGGAAAAATAGGAAACAGAGAGA
AGAGAAGAAGGAAAAAACAGAAGACAGAAACACAGAAAGGCAGAGAAATG
GAGTGCGGCGGATATATGGTTCGCTGTTGTTCTGGGTGGCGTGGTACCCG
CCCCACGTGTGTACTGGTGGAGGTACACAGCAGTATTCAGGGCCAAACTA
TCCTCAAGCTATCCTCAATACAAGCGTATCCAAGTCTCGAATTTAGTGAA
ACGTTGGCCCGAACACCGTGTCAACAAAAGCATAGTTTTTTGTTCGAAAT
TTCACGCCGGAAGATTTGCAGATGCTGTACCGTATATAGAGAGAGCTCTA
AAAGGCCAGACCATATCGATTTATGATATCTTACGTTGGGTATACTGTTT
GACGTCTTTGGTCTTCATTACAGTTGTTGTTGTTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGGCACACATGTGATAGACATGGCCCCGAAGGTAGA
CATGGCACCGAAGATGCCCGCTCATTGTAAAAACTCTGCTTGCTTGCGTT
GTGGAGATTGCCCGACCGGATTCGTTCCTTTTGTCGCAAAAACATGCCGA
ACGCCTTCCAGCTTTTCACGGGTGGAATCGGGTAAAGCGTTTCTCGCCGT
GACATGATCGTTGTAGCCAACACACACACACACACACACACACACACACA
CACACACTCACACACACATGCCTCCGACTCACCAACAGACCCCTTCCTTT
TTTTGTTCGGAGCGATTTCCCACAATAGAAGGTACTGAGTGCCCCCCTCG
TGAGGGCGGGGCCCTTTGTTAAGGGGCCCTTTGTTAACGAGAGAAATGAA
ACATGTAGGATACATATCATATCTGTATTTTGTTCGTTGAGACACGTCCT
GACTAAGCTCTTCCCTATGGCGAACCGGATTTGTTTTTGTTCGGGTTTCA
TGGGCTCCCTTCTGTGTTGCATATGTTCCTCGAAGACGACACTGATCGTG
TTGACGGCCTCTGTCCCTGTCGGGTGACAGCGGGGTCAAGCAGCAAGCAA
ACGAGATCAAATCGTAGTGACATGGAGGAGACATATTGCCTCACCCCCAG
GCTTTTTCCGTCGTTCTCTTGACTGCACAGCTCCCACAGATGGACCTTGG
ACAAGCCGATCTGTGTTATACGAAGTATGTGAAAAAGAAACAAATTATAT
CAAATCGCCGCGCCTTGGGGCGTAATTGTCTCGCCCACTGTCTGTCTGTC
AAGAGGGGTGTACTTCTATTTCGATGCCAGTTCTTGTCGAGTTGTCTGGT
TTGTCTTCTTTCGTTTTTTCTTTGTGCTGCGTACTTTTATGTTTACAAGT
GTCATAAAAAGCCATGACATGTGCTTTCGTTTGTTTTTTTCCCCTTGGGG
TTTTGCACGTCTGACGCCAAGCTAGGTCGGACTCAGCCGATTCGCTCTAA
ATGTGAAAAATCAATCAAAATTAGTCAAACCGATCAACTCTTCAAAGAGA
GAGATTGTAGTGTTGTGTAAGTGTAGGTGTAATTTGGGGCAGGGGTATAC
AATCAGGCACACAGTGTGGTGTAAGTGTACGTGTAATTTGGGGCAGGGGT
TTACACTCAGGTACACAGTGTAGTGTAGTAGTGTAAGTGTAGTTTGGGGC
AGGGGTATACAATCAGGTACACAGTGTAGTGTAAGTGTACATGTAGTTTG
GGGCAGGGGTATACAATCAGGTAAACAGTGTAGTTTAAGTGTAGGTGTAA
TTTGGGGCAGGGGTATACAACCAGGGACACAGCCTACATGTGTACTTTTG
AATCCGATATATACACTCACTGATTGTACCTACAAGACACGCGTATTTTC
TAAACTAGTACAACCAGGTACACATAGCATTCACTCTACACTGTTGTACA
CTCGTAAAGTACACGGGATACACGTGTACAGTGTTAATAGTACACTACAA
CCTCCACCTTTGGACTCTTACTCCTTTTCCCTTTCACTCACCACCCTTTA
CCGCAACGATAACTGGCGTAACAGTTACAGCTACATGGAGCACATCGTGT
CGAAGTGGGACGAGCTGGGCGTTCTGAAGAGAGTCCTGGAGAAAAAGCTC
ATCTTCATCGAGACAAAGGTATAGGTTACACACTCGCCTTTCCCCTCTCT
TTCTGACTCCGAACGTGGTGCTAATTGTTTATTTTTTCGGTTGGCGTTTC
CGATTTATCGATTTCTCATACTGTACACAAGTAATGTGACCACGAGCGGG
ATCGGCAACCATCGGTAGGCCTGTCCGGTTTGTAAAGTAACTCTGTGGCA
ATCATTAAAATGATATTTCAATCAAATCAATCAACTCTCCACCTGAACGG
AGGAGGTGGCTCTCGTTGCAGCAAGCCAAGTCGGCAAACTTTGTTGACAC
AAACGTAACCAAACAGATTCAATGCGCCATCATTCAACAAAAGAAGAACA
TCGTTCCGTCAGTCAACACACACACACAAACACACACATACACACACACA
CATCGACAGACTCTGAATCACGCAGCCATATTTGACCAATTCACCAAATC
ACAATTTCGCCAACTCGACCGATCAGGATGTGGTGGAGACAACTCTGGCT
CTGGACAATTTCAAGCGCGCTTGCGACTGCGGGCGAGGGGCAGTATTTCT
GTCCGTTGCGAGGGGGAAGGTGAGATTGACCAAGCAATAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig11225:168..5557-

>mRNA_S-dermatodea_contig11225.789.1 ID=mRNA_S-dermatodea_contig11225.789.1|Name=mRNA_S-dermatodea_contig11225.789.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at S-dermatodea_contig11225:168..5557- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGTGATCACCTCCGGGACGCTCTCTCCTCTCGACCTGTACCCCAAGCT
CCTGGGGTTCCAGCCAGTGGTGCGGACCGCGTTGACGATGTCCACGGTCA
GGAAGTGCATCTGCCCGCTGGTCGTTACCAGGTGGTGATCACCTCCGGGA
CGCTCTCTCCTCTCGACCTGTACCCCAAGCTCCTGGGGTTCCAGCCAGTG
GTGCGGACCGCGTTGACGATGTCCACGGTCAGGAAGTGCATCTGCCCGCT
GGTCGTTACCAGGGGTTCGGACCAGCTTCCGATGAGCACGAAGTTCGACC
AGAGAGATGACCCCTCCGTTGTGCGAAACTACGGAGCGCTGATGATCGAC
CTTGCCGGCATCGTCCCTGATGGAGTGGTCTGCTTCTTCACCAGGGGTTC
GGACCAGCTTCCGATGAGCACGAAGTTCGACCAGAGAGATGACCCCTCCG
TTGTGCGAAACTACGGAGCGCTGATGATCGACCTTGCCGGCATCGTCCCT
GATGGAGTGGTCTGCTTCTTCACCAGTTACAGCTACATGGAGCACATCGT
GTCGAAGTGGGACGAGCTGGGCGTTCTGAAGAGAGTCCTGGAGAAAAAGC
TCATCTTCATCGAGACAAAGTTACAGCTACATGGAGCACATCGTGTCGAA
GTGGGACGAGCTGGGCGTTCTGAAGAGAGTCCTGGAGAAAAAGCTCATCT
TCATCGAGACAAAGGATGTGGTGGAGACAACTCTGGCTCTGGACAATTTC
AAGCGCGCTTGCGACTGCGGGCGAGGGGCAGTATTTCTGTCCGTTGCGAG
GGGGAAGGTGAGATTGACCAAGCAATAAGATGTGGTGGAGACAACTCTGG
CTCTGGACAATTTCAAGCGCGCTTGCGACTGCGGGCGAGGGGCAGTATTT
CTGTCCGTTGCGAGGGGGAAGGTGAGATTGACCAAGCAATAA
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