prot_S-dermatodea_contig11065.695.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig11065.695.1
Unique Nameprot_S-dermatodea_contig11065.695.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length238
Homology
BLAST of mRNA_S-dermatodea_contig11065.695.1 vs. uniprot
Match: D8LNI7_ECTSI (SRP_SPB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNI7_ECTSI)

HSP 1 Score: 293 bits (749), Expect = 2.040e-97
Identity = 159/237 (67.09%), Postives = 192/237 (81.01%), Query Frame = 0
Query:    1 MALRRSLPALSSIGKASSLARMGRLAPPSLGVGSSTLEGAVPGRRDMRVLLPTGQSAQGSGVRGFGVVESVQNKIISRSVNKQEKQFKDQMKELSLQESFNLDDFAKIIEAPLGKLSSKLPWNKNRDEVKNMKTQKQVLDALTPAQRKNPEIIRAGHRQAIADRAGCTLEDVNNLLASFRELKAMHGWLSTRRKRKEKIPTSQEEMSVMASDPSGTTLMKFMRVKKGGSGQRPSFGF 237
            MA+RRSLP L  I  AS ++  GR+APPS  +  S   G   G RD RVLLPTG+  +G+GVRGFGV++SVQ+KII+R+  KQEKQFK+QM+ELSL+ESFNLDDFAKIIE PL K S+KLPWNK+R+E++ MK QK+VL+ LTP QRKNPE IR GHRQ IADRAG T EDVN  LA++RELKAMHGWLSTRRKRKE+IP++QEE+ VMA+DPSGT LM FM+VK+  SG +PSF F
Sbjct:    1 MAMRRSLPTLRPIVSAS-VSGAGRMAPPSCSLRGSGCSGGGGGGRDWRVLLPTGRGVEGAGVRGFGVMDSVQDKIINRNTAKQEKQFKEQMEELSLKESFNLDDFAKIIEEPLDKFSAKLPWNKSREELQAMKMQKKVLEGLTPLQRKNPESIRHGHRQRIADRAGVTTEDVNKALAAYRELKAMHGWLSTRRKRKERIPSTQEELHVMATDPSGTMLMNFMKVKRSNSG-KPSFAF 235          
BLAST of mRNA_S-dermatodea_contig11065.695.1 vs. uniprot
Match: A0A7S2RHR0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RHR0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.220e-6
Identity = 43/153 (28.10%), Postives = 83/153 (54.25%), Query Frame = 0
Query:   66 GVVESVQNKIISRSVNKQEKQFKDQMKELSLQESFNLDDFAKIIEAPLGKLSSKLPWNKNRDEVKNMKTQKQVLDALTPAQRKNP---EIIRAGHRQA--IADRAGCTLEDVNNLLASFRELKAMHGWLSTRRKRKEKIPTSQEEMS-VMASD 212
            G ++ V++KI  RS  KQ  ++ DQ+K ++  E ++L  F + I+  +G   SK+P   N ++VK +K  + +++AL     +N    E+ + G ++   I+ R+  ++E +N ++  F+ +  MH  L  R    + IPT +  M  +M +D
Sbjct:   70 GFLDRVKDKIDERSQKKQADKYADQIKTMAESEQWDLKSFGEEIDKSVGGWRSKIPGMSNLEQVKAVKENQNLVNALIGELGENATAKELNQLGRKEKLLISLRSSVSVEAINMIVQQFQGMDIMHRILRYRMSNGQPIPTDEIAMQRIMQAD 222          
BLAST of mRNA_S-dermatodea_contig11065.695.1 vs. uniprot
Match: A0A2M7JD02_9BACT (Signal recognition particle protein n=5 Tax=Candidatus Desantisbacteria TaxID=1819803 RepID=A0A2M7JD02_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 2.450e-5
Identity = 44/139 (31.65%), Postives = 75/139 (53.96%), Query Frame = 0
Query:   62 VRGFGVVESVQNKIISRSVNKQEKQFKDQMKELSLQESFNLDDFAKIIE-----APLGKLSSKLP-WNKNRDEVKNMKTQ----KQVLDALTPAQRKNPEIIRAGHRQAIADRAGCTLEDVNNLLASFRELKAMHGWLS 190
            + G G V S+  K    SVN +E +    +++  L + FNL+DF   ++      PL +L   +P +NK    +K  + Q    + +++++T  +RK P+I+    R+ IA  +G T+E+VN LL  F +LK M G L+
Sbjct:  290 ILGMGDVLSLIEKA-EESVNSEEAK---SLQQRMLSQKFNLEDFLSQLKQIKKLGPLDQLMGMVPGFNKMSGGMKVNEKQLGRTEAIINSMTRLERKKPDILNGSRRKRIAKGSGTTVEEVNQLLKQFEQLKNMFGSLT 424          
BLAST of mRNA_S-dermatodea_contig11065.695.1 vs. uniprot
Match: A0A3M1IVK0_9CHLR (Signal recognition particle protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1IVK0_9CHLR)

HSP 1 Score: 55.5 bits (132), Expect = 2.460e-5
Identity = 30/102 (29.41%), Postives = 63/102 (61.76%), Query Frame = 0
Query:   96 LQESFNLDDFAKIIE-----APLGKLSSKLPW------NKNRDEVKN-MKTQKQVLDALTPAQRKNPEIIRAGHRQAIADRAGCTLEDVNNLLASFRELKAM 185
            L+ +FNL+DF + +       PLGK+   +P       + ++++++N +K  + ++ ++T  +R+NP+++    R+ IA  +G T++DVN L+A FR+++ M
Sbjct:  322 LEGNFNLEDFLEQLHQVKRMGPLGKVMDMIPGMGEITKSISQEDMENSLKRTQAIISSMTTYERRNPKVLNGSRRRRIAKGSGTTVQDVNQLIAQFRQMQKM 423          
BLAST of mRNA_S-dermatodea_contig11065.695.1 vs. uniprot
Match: A0A1H0DWN9_9DELT (Signal recognition particle protein n=1 Tax=Desulfonauticus submarinus TaxID=206665 RepID=A0A1H0DWN9_9DELT)

HSP 1 Score: 54.3 bits (129), Expect = 6.080e-5
Identity = 33/99 (33.33%), Postives = 59/99 (59.60%), Query Frame = 0
Query:  100 FNLDDFAKIIEA--PLGKLSSKLP----WNKNRDEVKNMKTQKQ-------VLDALTPAQRKNPEIIRAGHRQAIADRAGCTLEDVNNLLASFRELKAM 185
            F+L+DF   ++    LG +   L       K RD++KN+K  ++       +++++T  +RKNP+II A  ++ IA  +G T++DVNNLL +F +++ M
Sbjct:  327 FDLEDFRTQMKRIKKLGSIEGLLKLIPGMGKLRDQLKNVKIPEKEMAKLEAIINSMTKEERKNPKIINASRKERIAKGSGTTVQDVNNLLKNFEQMRKM 425          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11065.695.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LNI7_ECTSI2.040e-9767.09SRP_SPB domain-containing protein n=2 Tax=Ectocarp... [more]
A0A7S2RHR0_9STRA7.220e-628.10Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A2M7JD02_9BACT2.450e-531.65Signal recognition particle protein n=5 Tax=Candid... [more]
A0A3M1IVK0_9CHLR2.460e-529.41Signal recognition particle protein n=1 Tax=Chloro... [more]
A0A1H0DWN9_9DELT6.080e-533.33Signal recognition particle protein n=1 Tax=Desulf... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 85..210
e-value: 2.4E-12
score: 48.6
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 83..189
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 111..185
e-value: 1.6E-9
score: 38.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11065contigS-dermatodea_contig11065:2930..6635 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11065.695.1mRNA_S-dermatodea_contig11065.695.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig11065 2889..7536 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig11065.695.1 ID=prot_S-dermatodea_contig11065.695.1|Name=mRNA_S-dermatodea_contig11065.695.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=238bp
MALRRSLPALSSIGKASSLARMGRLAPPSLGVGSSTLEGAVPGRRDMRVL
LPTGQSAQGSGVRGFGVVESVQNKIISRSVNKQEKQFKDQMKELSLQESF
NLDDFAKIIEAPLGKLSSKLPWNKNRDEVKNMKTQKQVLDALTPAQRKNP
EIIRAGHRQAIADRAGCTLEDVNNLLASFRELKAMHGWLSTRRKRKEKIP
TSQEEMSVMASDPSGTTLMKFMRVKKGGSGQRPSFGF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036891Signal_recog_part_SRP54_M_sf
IPR004125Signal_recog_particle_SRP54_M