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Homology
BLAST of mRNA_S-dermatodea_contig11065.695.1 vs. uniprot
Match: D8LNI7_ECTSI (SRP_SPB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNI7_ECTSI) HSP 1 Score: 293 bits (749), Expect = 6.820e-93 Identity = 159/237 (67.09%), Postives = 192/237 (81.01%), Query Frame = 3
Query: 42 MALRRSLPALSSIGKASSLARMGRLAPPSLGVGSSTLEGAVPGRRDMRVLLPTGQSAQGSGVRGFGVVESVQNKIISRSVNKQEKQFKDQMKELSLQESFNLDDFAKIIEAPLGKLSSKLPWNKNRDEVKNMKTQKQVLDALTPAQRKNPEIIRAGHRQAIADRAGCTLEDVNNLLASFRELKAMHGWLSTRRKRKEKIPTSQEEMSVMASDPSGTTLMKFMRVKKGGSGQRPSFGF 752
MA+RRSLP L I AS ++ GR+APPS + S G G RD RVLLPTG+ +G+GVRGFGV++SVQ+KII+R+ KQEKQFK+QM+ELSL+ESFNLDDFAKIIE PL K S+KLPWNK+R+E++ MK QK+VL+ LTP QRKNPE IR GHRQ IADRAG T EDVN LA++RELKAMHGWLSTRRKRKE+IP++QEE+ VMA+DPSGT LM FM+VK+ SG +PSF F
Sbjct: 1 MAMRRSLPTLRPIVSAS-VSGAGRMAPPSCSLRGSGCSGGGGGGRDWRVLLPTGRGVEGAGVRGFGVMDSVQDKIINRNTAKQEKQFKEQMEELSLKESFNLDDFAKIIEEPLDKFSAKLPWNKSREELQAMKMQKKVLEGLTPLQRKNPESIRHGHRQRIADRAGVTTEDVNKALAAYRELKAMHGWLSTRRKRKERIPSTQEELHVMATDPSGTMLMNFMKVKRSNSG-KPSFAF 235
BLAST of mRNA_S-dermatodea_contig11065.695.1 vs. uniprot
Match: A0A7S2RHR0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RHR0_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 3.780e-5 Identity = 43/153 (28.10%), Postives = 83/153 (54.25%), Query Frame = 3
Query: 237 GVVESVQNKIISRSVNKQEKQFKDQMKELSLQESFNLDDFAKIIEAPLGKLSSKLPWNKNRDEVKNMKTQKQVLDALTPAQRKNP---EIIRAGHRQA--IADRAGCTLEDVNNLLASFRELKAMHGWLSTRRKRKEKIPTSQEEMS-VMASD 677
G ++ V++KI RS KQ ++ DQ+K ++ E ++L F + I+ +G SK+P N ++VK +K + +++AL +N E+ + G ++ I+ R+ ++E +N ++ F+ + MH L R + IPT + M +M +D
Sbjct: 70 GFLDRVKDKIDERSQKKQADKYADQIKTMAESEQWDLKSFGEEIDKSVGGWRSKIPGMSNLEQVKAVKENQNLVNALIGELGENATAKELNQLGRKEKLLISLRSSVSVEAINMIVQQFQGMDIMHRILRYRMSNGQPIPTDEIAMQRIMQAD 222
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 297.0 |
| Seed ortholog evalue | 8e-78 |
| Seed eggNOG ortholog | 2880.D8LNI7 |
| EggNOG free text desc. | Signal peptide binding domain |
| EggNOG OGs | 2AVD2@1,2RZW3@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | mitochondrion |
| Ec32 ortholog description | Signal recognition particle, SRP54 subunit, M-domain |
| Ec32 ortholog | Ec-24_002990.1 |
| Exons | 6 |
| Model size | 1656 |
| Cds size | 714 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig11065.695.1 >prot_S-dermatodea_contig11065.695.1 ID=prot_S-dermatodea_contig11065.695.1|Name=mRNA_S-dermatodea_contig11065.695.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=238bp
MALRRSLPALSSIGKASSLARMGRLAPPSLGVGSSTLEGAVPGRRDMRVL
LPTGQSAQGSGVRGFGVVESVQNKIISRSVNKQEKQFKDQMKELSLQESF
NLDDFAKIIEAPLGKLSSKLPWNKNRDEVKNMKTQKQVLDALTPAQRKNP
EIIRAGHRQAIADRAGCTLEDVNNLLASFRELKAMHGWLSTRRKRKEKIP
TSQEEMSVMASDPSGTTLMKFMRVKKGGSGQRPSFGF* back to topmRNA from alignment at S-dermatodea_contig11065:2889..7536+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig11065.695.1 ID=mRNA_S-dermatodea_contig11065.695.1|Name=mRNA_S-dermatodea_contig11065.695.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4648bp|location=Sequence derived from alignment at S-dermatodea_contig11065:2889..7536+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCCGCCGCGCTTGGCCGACGCACACAGCAGTTGCACAGACATGGCGCTC
CGCAGGAGGTGAGCGGTAGAGAAGGAAGCGCTAGCTTTCTCTGATGCCCT
CGCCGGCGCCCACAACCACGAACGAGTCAATTTCTCAGAGCACAGAGCAC
CAGGTTGCATTTCTGTGTCAAGCCAATCAAGCTCCCTCTCGACGGTATGT
AGGGCACCTGTCAGGCAGAGGGGCACTCAGTGGAGCGGGCGCTCTGGTGT
GTTTGACGCGGGGGCCAGTGCGTAAGCCCGTGCGTGTTTCCGGGTGCGAT
GCCTGAAGCGTTAGTGCTGGTTTGTTCGGGAGTGCATATTTTGGGGACGG
TACGTATGTACTGCATATTACCGAGGTCCGAGGCCCGCGATCGGTAAGAC
AAGGTCACCATACGCTCACCACGTCGTTGCCGACTCGACTACTGCTGTGG
GTAGACGCTGGCAACCATTGCGTTCATGTGGATGGCTCCCACGAAGACGT
ACCCATGTTTGACTTACCCGGGTGTGCTACGCGGTGTGATACTAACCGTG
TGTCGTCACCGACACATTATACAAGTCAGTTGTCAATGTCAACAACAGTA
CCTGGTAGTGCATAAGCTAGGTCTATAGCTCTACTACAAGTACAGCAGTT
GTAGATCTACAACAAATACCAGCAACACAAAAGCTGCTGCATTAGAGCTC
TAGAGCTACCCTCGTGAAATCAGCATTTGCGTGGGCATTCACGACCACCA
ACAGTCAGTCACAGAAGCAACACCAGTCCGACATATCGCCCGAATTCACG
GCCACGTTGGGGAATACACTTTACCCCTAAGCCCTTACAAGTCGTTAGAG
CATGATAACAAACCCTTCCGCCTCCTCCCCTTCCACCAAACAGCCTTCCG
GCCCTGAGCTCGATCGGCAAGGCGTCGTCTTTGGCGAGGATGGGACGGCT
GGCGCCGCCAAGTTTAGGGGTAGGGTCGTCGACCCTCGAAGGAGCGGTGC
CTGGAAGGCGGGATATGAGGGTTCTGTTGCCCACGGGGCAATCCGCGCAG
GGGTCAGGCGTGCGAGGATTTGGGGTGGTGGAGTCCGTGCAAAACAAGAT
AATCAGTAGGAGCGTCAACAAGCAAGGTGCCGTTTCCCCTGGTTTTTGTG
TTGCTGCTGCGGCTCCTGCTTTTTTGCCGCGCAGTATCGGCGCCTCTGAT
GCTGCCTCGTGTCGGTGGTGTTTCCGCTCGTGTGTTTCGCTCGATATCAC
GGTCGCGATGATGGACAGCTGAAACAGGTTTGCGGCCGTTCTCCAATTGG
CATTTTCGGTGGCTTGCCAAATTCGTGTATCTTTCTCGCGCTTTGTTTAA
TTTGAGATAACCTGCTTCTCTTGAAACAGTAGTTCTTGAGATCGTTTTTT
TCAATTTGCTGTCCCAATTCAGTCTCGGGGGTTTTGCCTTTCACCCACAT
CGTCACTTACCTTGTTCGTGGCAGAAAAGCAGTTCAAAGACCAGATGAAG
GAATTGTCCTTGCAGGAAAGCTTTAACCTTGATGACTTCGCCAAGATTAT
TGAGGTGAGCCCTTCCCACGGAGTCGGTACTCAGCTTGATGATTTTGTGG
GGTCGGCGAGAGGGCAACTTTGCTGAGCTTTGAGATCGGGAAGTCTGATG
GTCGCACCTCTTCATCTTCAAGGCTCTAGCGACTGGCAGTGCTGTGTGTT
TTCTCGCCGTTTCGCTGGGAAATATGAGCATGCCTCTATTAATAGTGCTG
CTGTCGCCCCTATTGCGGGCCAGTTTGAACGCGAGACCCCCTGATGTATT
GATGCACCGGCGGGCGCGATGTTAATCACCCGCTATTCGCGCAGGCCCAG
AAATAGCAATTGAGCATCGCATCACGTAGACACAATCTAGGGAATATGCA
CTGTTTTTGCTTCGGTGCCACGTGGCGAGTTTCGGCGAATGAGCCTGGTC
TGTACCGTGGACGTCCTCGTGTCGCGCGGCACGCGCCCCTCTCTCTTGTC
GGTACAGGCGCCGCTTGGCAAGCTTTCCTCCAAGTTGCCTTGGAACAAAA
ACCGGGACGAGGTGAAGAACATGAAGACGCAGAAGCAGGTCCTGGACGCC
CTGACCCCGGCGCAGAGGAAAAATCCCGAAATCATCAGGGCCGGCCACCG
CCAAGCGATCGCCGACAGGGCCGGATGTGTGAGTCCGATCGTGGAGCAGC
AATGCCCGACACACCACGGTAACCCCTTGCCTGTACTATGTTTGGTTGGC
GGTACGAATAGCTTTCGCTACGGAGGTGGTGGCACGTCCCACTGCGCGTC
GGACTTCTGCCGGCTTTGTTTTTGTTTGTCTCTCGCCTCTTTGTGCGTTA
GATTCGGCGCTACGGAGAGAGATGTAAGGTGCCTGATAGAAAATCGCGCG
AGGAACGGGTCGAGCGGGCGGCAGGCCCTGGAGCGTTTGGCACATCGAGC
GCGTGCCTCCCGCCCCCACCCCTGGAAGGATCGATTTACTATTGGGCATC
GCTCTACGAAATTGTGTGGCGGGCGCAACGATGCCTGGTTTTGATTTTCT
CGGGCCAGAGCGCGCAGCGTTGAAAAGCGACTACGTGTGCAGCAGTTCGT
TTTTTTCATTTTTTTCATTGATTGATTTGCGTACGTATAGCCGATCGGCT
TAATCCTCCCCGACTAGTGGTCAGATACGCAAAAAGTCAAGGAGAAAAAT
GTACAATCAGAAGTCTACTCCTACAATACACCGTACCGTCCCTACACGGC
GAAATATCGGCATCCCGTTCCCACGCTTTCGCTACCCCGGCGCCCCCCCC
GCCCCCCCCCGCCCCCCCCCGCGTCGTGTTTGTGGCCTACGCAGACTTTG
GAGGATGTTAACAATCTGCTGGCCTCCTTCCGGGAGCTGAAGGCGATGCA
CGGCTGGCTGTCGACTCGAAGGAAGCGAAAAGAGAAGATTCCGACTTCGC
AGGAGGAGATGAGCGTCATGGCGTCCGATCCGTCCGGCACAACGCTCATG
AAGTTCATGTGAGCTATCAGTGACCAGGATACAGCGCCGCCCCTTGAAGA
AAATGGGTTTATATTTTCTCTTTGTATGTCGGAAGGGGGAGATAGATACC
GTGTTACAAGCGGGATGCACGCGATCGGGGATATGCTTGGGGAGCGTGAC
CTTTGTTGCATGGGGTACGCACTACACCTGCACGTCCCTCGATAGTAGCA
CTTGCTCTGTTTCGACAGTTCTTCCAGGAGTTTGACAGAGCCTCCGGCGA
AGTGCACGAAGCTCGCCACCTTGAGGAGAACGCGGTGTGTGCTACGGCTT
TTTGTCCCCCCCCCGACGCTCCTACCCCACCCTTTGCACGGCAAGTATTG
ACGATCGCCCTCGTGTAGCATGACAGCATGACAGCATGACAGCTTGTTTT
GGTTCGGTACCCTTGAGATTACGCGAAAATGTTTGCCTCCTTGTTGCCAA
AGCACAGGGGTGTCCCCGACTTTGGCCTGGCCCTACCTCCCATTGCTTGC
GTTTCGCGAGGTTATCCTCGTGGTGGTGACCTTTTCCGGTATGCCGGGCG
ATTGATGCACACCCGCTTGCGTCTGCTTCTGGTCGTTTTGTGGCGTAGTT
GCGCCCCCTGTAGAAAATCGATTCGAGTGACACGCCGTCTCGAGCAACCC
CCTCGTGTTTTCCGATCGCCCACCACCCTCCTTGTGCTGCGCCCTCAGGA
GAGTAAAAAAGGGCGGTTCCGGACAGCGACCAAGCTTCGGCTTTTAACCA
CCGGCAGTTTCCGCGGCTGGGTTTGTCATGACCCGAGCGACGCTTCATCG
GACGAACGAGTAGGTCGGTGGCGGCGACGTTGGAGGTTGCGGGGGAAAGG
ACTTAAAGAAACGATGGGACTCCAACGGTCGCTCTCCGTATTTGAAATCA
ACATAGTTTTGAAAGGGCGGGGCGAGCCGGAGGGTGTGGTTAGGTCACCG
AAGCTTGGTGTTGCGCGGTGTTTTGCAAGGGCGGGGTGCGATCAGCTTTG
GTTGGACAAGGTTTGGCTGCAACCGGGGCCATCGGCGACGTGTTTTTCGT
GCGCTCTTTGTTTTGTTGCTGATTAGTGGACGTGTGCTTTGTGATGACCC
GCTTGCTGTTGACGAAAATATACCTATGATGCGACGAAGTTTTGTTTCAT
TTTGAGGCTTGGAGCTGTACATGCAACCTTGGGGATTAACGAGCGTGGCT
CGTGCGCCAACAGAGGTTTGCTCTTGATTTTTTTGCTCTCTTCATCCTCG
GGGATATCCCCTGCAACAGGGTTCTTTGTTTTCTGTTTGCTTGGAGCTTC
CAAGGCCCCCGGGCGGCCGACTCTTTCCAGAGTTTGGGATGGATCCGTTC
AGCAACTGGTGTAGGAAATCCACGACCATAGTTAGAGTCGGTGAGTGGGG
GTTTGACGGCACCACTGTATGACTGCCAGCAGGCCGTTCTCCATGCCTAT
ACTACGACTACCGGCGGCCGGGGTCTTTAAACTTGTCCCATCAGCTAGAG
ACTCGTCGGCCACGTTGGTCCTAGGACGACACAGCTGAACTAACACTAAA
AAAACACTCAGATGTCTATATTCGAATGGACTTGTGAGCACTTTTATAGT
TGTCGTGGCGTCTGCTGTGACTACAAATGGAAGCCACGAAAAGAAAAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig11065:2889..7536+ >mRNA_S-dermatodea_contig11065.695.1 ID=mRNA_S-dermatodea_contig11065.695.1|Name=mRNA_S-dermatodea_contig11065.695.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at S-dermatodea_contig11065:2889..7536+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGCTCCGCAGGAGATGGCGCTCCGCAGGAGCCTTCCGGCCCTGAGC
TCGATCGGCAAGGCGTCGTCTTTGGCGAGGATGGGACGGCTGGCGCCGCC
AAGTTTAGGGGTAGGGTCGTCGACCCTCGAAGGAGCGGTGCCTGGAAGGC
GGGATATGAGGGTTCTGTTGCCCACGGGGCAATCCGCGCAGGGGTCAGGC
GTGCGAGGATTTGGGGTGGTGGAGTCCGTGCAAAACAAGATAATCAGTAG
GAGCGTCAACAAGCAAGCCTTCCGGCCCTGAGCTCGATCGGCAAGGCGTC
GTCTTTGGCGAGGATGGGACGGCTGGCGCCGCCAAGTTTAGGGGTAGGGT
CGTCGACCCTCGAAGGAGCGGTGCCTGGAAGGCGGGATATGAGGGTTCTG
TTGCCCACGGGGCAATCCGCGCAGGGGTCAGGCGTGCGAGGATTTGGGGT
GGTGGAGTCCGTGCAAAACAAGATAATCAGTAGGAGCGTCAACAAGCAAG
AAAAGCAGTTCAAAGACCAGATGAAGGAATTGTCCTTGCAGGAAAGCTTT
AACCTTGATGACTTCGCCAAGATTATTGAGAAAAGCAGTTCAAAGACCAG
ATGAAGGAATTGTCCTTGCAGGAAAGCTTTAACCTTGATGACTTCGCCAA
GATTATTGAGGCGCCGCTTGGCAAGCTTTCCTCCAAGTTGCCTTGGAACA
AAAACCGGGACGAGGTGAAGAACATGAAGACGCAGAAGCAGGTCCTGGAC
GCCCTGACCCCGGCGCAGAGGAAAAATCCCGAAATCATCAGGGCCGGCCA
CCGCCAAGCGATCGCCGACAGGGCCGGATGTGCGCCGCTTGGCAAGCTTT
CCTCCAAGTTGCCTTGGAACAAAAACCGGGACGAGGTGAAGAACATGAAG
ACGCAGAAGCAGGTCCTGGACGCCCTGACCCCGGCGCAGAGGAAAAATCC
CGAAATCATCAGGGCCGGCCACCGCCAAGCGATCGCCGACAGGGCCGGAT
GTACTTTGGAGGATGTTAACAATCTGCTGGCCTCCTTCCGGGAGCTGAAG
GCGATGCACGGCTGGCTGTCGACTCGAAGGAAGCGAAAAGAGAAGATTCC
GACTTCGCAGGAGGAGATGAGCGTCATGGCGTCCGATCCGTCCGGCACAA
CGCTCATGAAGTTCATACTTTGGAGGATGTTAACAATCTGCTGGCCTCCT
TCCGGGAGCTGAAGGCGATGCACGGCTGGCTGTCGACTCGAAGGAAGCGA
AAAGAGAAGATTCCGACTTCGCAGGAGGAGATGAGCGTCATGGCGTCCGA
TCCGTCCGGCACAACGCTCATGAAGTTCATGAGAGTAAAAAAGGGCGGTT
CCGGACAGCGACCAAGCTTCGGCTTTTAAGAGAGTAAAAAAGGGCGGTTC
CGGACAGCGACCAAGCTTCGGCTTTTAA back to top
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