prot_S-dermatodea_contig1088.587.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1088.587.1
Unique Nameprot_S-dermatodea_contig1088.587.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length707
Homology
BLAST of mRNA_S-dermatodea_contig1088.587.1 vs. uniprot
Match: A0A6H5JE04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE04_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 9.180e-79
Identity = 303/735 (41.22%), Postives = 378/735 (51.43%), Query Frame = 0
Query:   14 TTRGAFNGSAMAQGVDGAVPAAPAQTSVVIGNLKSHVDKEALVALCRQLGRVTSFRLT--PGPTPESPATAVVDYALPEEAAGVVSHVNGRLILGQPVTACVAISALYRQPAAPPLPQGTPSPQAAXXXXXXXXXXXXXXEQHRNINQAQD-----KNGG--PPTYGRYPGPERTNTHEESRAPHAGSPAWER---GPHGQDQRTAERAPPHARYGESPVHNQ--QQQHPMW-AGRPRRENGGGGA--SSRYVNEAGPDPYVAPQQWQGQ--GERPQDEDAEGWERNGRNNYPTHRDAR-------SEHTGYQPQASSGWPDGAGSRGHPPAAY--GGGSAGRATPAGIPR----GPAGPHKLRGDDGYGDEDSGNISAGTMQR-PAPRSIGRGMPDSGQLA-WSEGPGYAAPXXXXXXXXXXXXXXXXXTEFQQEVIRAAALLLAEREVRAREDERKQGTVQTEREFPDGPTQRY-GDREATERARGGMANSSITDRRGTRSIDDADKRKREGDSRERRQRDARGGDSHGGRTGDRGNRSRERDDGGRHREQDK--EKFTDEDRARRDSRPRTGKSSREWETSTSHTGKSYKRAESEDERRARWAGETGRA---REPATSVPFNKNWET-NAADSGYYVHVEGISFSTTFTTLAKRFAAFGDVNGFKVVFNNITCRSADRSGDARNRSKEDASKPAVVTASTGFAFISFDDEKGMEKAIECMNNQTLDGHVLKV 707
            +T GA  GSA+A G D      PA T V+IGNLK  VDKEAL AL  QLG VT+FRL   PG  P SPAT VV+YA  E+A+ VV+HV+G+LILG+PVTA VA         APPLPQG P   +A XXXXXXXXXXXXX                KNGG  PP  G  P     N+HE++R        WER                     YG+   HNQ  QQQH  W +GRP  +  G     + RY  E G   Y A + WQ Q  G    DE A  WER  RN +P  + A        S H    PQ S  + D      H  +AY  GG   G    A +PR    G  G      DDGYGD+D   + AG M+R P P S   G+P SG+ A W++   Y  P                  +F++EV++AAALL+AERE+ ARE+ RKQG        P   T  Y G R++ +   G  +    TD R  R      K + +GD R + ++  R  DS G R G  G R+ ER    R RE+ K   +  D DR R DS   + K                      D   ++ + + G +   R+   S P    WE  + A  G+YVHV G+SFSTTFTTLAKRFAAFGDVNGFKV+FN ++C + + S   R  SKE+ +K AVVTAS+GFAFISFD E+GMEKA+ECM+ Q LDG++LKV
Sbjct:    2 STNGA--GSAIATGSDDGEARGPANTRVIIGNLKRDVDKEALKALLCQLGHVTNFRLQQPPGIDPASPATGVVEYASAEDASRVVAHVHGKLILGRPVTAWVAAPGST----APPLPQGGPPSTSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNGGRYPPAVGHNP-----NSHEDAR--------WERPXXXXXXXXXXXXXXXXXQDTYGDGLSHNQRQQQQHQSWHSGRPMPQQSGANVPIAPRYGGEGGSAHY-AERHWQDQRHGHSEADESA-AWERPDRNQFPAAQRAPMRQQPPPSFHRPTGPQTSEWYDDADSQVAHGNSAYDDGGQRRGPRGRAMMPRRASAGSVGVPPRSSDDGYGDDD---VPAGAMRRLPPPNSAPHGVPLSGRAAAWTDDAQYTMPPPISIKGE----------DFEKEVVKAAALLVAEREM-AREEARKQGKQNWSGADP---TPGYEGPRKSKKARSGSRSMGEETDERKKREPSSR-KDENDGDHRPKSKKTRR--DSSGDRHGSVGKRADERKGKARTREESKGGPQGDDRDRKREDSSRTSHKDKHRXXXXXXXXXXXXXXXXXNDPDSSKSSPKQGSSSWDRKGFNSSP----WENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETS--KRKGSKEEVTKAAVVTASSGFAFISFDKERGMEKAVECMDGQKLDGNILKV 689          
BLAST of mRNA_S-dermatodea_contig1088.587.1 vs. uniprot
Match: D8LJZ2_ECTSI (Polyphosphate kinase 2 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ2_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 5.590e-40
Identity = 148/369 (40.11%), Postives = 197/369 (53.39%), Query Frame = 0
Query:  347 DDGYGDEDSGNISAGTMQRPA-PRSIGRGMPDSGQLA-WSEGPGYAAPXXXXXXXXXXXXXXXXXTEFQQEVIRAAALLLAEREVRAREDERKQGTVQTEREFPDGPTQRYGDREATERARGGMANSSITDRRGTRSIDDADKRKREGDSRERRQRDARGGDSHGGRTGDRGNRSRERDDGGRHREQDK--EKFTDEDRARRDSRPRTGKSSREWETSTSHTGKSYKRAESEDERRARWAGETGRA---REPATSVPFNKNWET-NAADSGYYVHVEGISFSTTFTTLAKRFAAFGDVNGFKVVFNNITCRSADRSGDARNRSKEDASKPAVVTASTGFAFISFDDEKGMEKAIECMNNQTLDGHVLKV 707
            DDGYGD+D   + +G M+RP  P S   G+P  G+ A W++   Y  P                  +F++EV++AAALL+AERE+ ARE+ RKQG        P       G R++ +   GG +    TD R  R      K + +GD R R ++  R  DS G R G  G R+ ER    R RE+ K   +  D DR R                               D   ++   + G +   R+   S P    WE  + A  G+YVHV G+SFSTTFTTLAKRFAAFGDVNGFKV+FN ++C + + S   R  SKE+ +K AVVTAS+GFAFISFD+E+GMEKA+ECM+ Q LDG++LKV
Sbjct:   19 DDGYGDDD---VPSGAMRRPPXPNSASHGVPLPGRAAAWTDDAEYTMPPPISIKGE----------DFEKEVVKAAALLVAEREM-AREEARKQGKQDWSGVDP--TPGHEGPRKSKKARSGGRSMGEETDERKKREPSSR-KDENDGDHRPRSKKTRR--DSSGDRHGSVGKRADERKGKTRTREESKGGPQGDDRDRKREXXXXXXXXXXXXXXXXXXXXXXXXXXXRDNDLDSSKSLPKQGSSTWDRKDFNSSP----WENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETS--KRKGSKEEVTKAAVVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKV 362          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1088.587.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JE04_9PHAE9.180e-7941.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJZ2_ECTSI5.590e-4040.11Polyphosphate kinase 2 family protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 40..112
e-value: 3.8E-5
score: 33.1
coord: 611..707
e-value: 5.8E-6
score: 35.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 41..109
e-value: 3.8E-7
score: 29.8
coord: 673..706
e-value: 3.7E-7
score: 29.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 610..707
score: 12.646
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 39..116
score: 9.951
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 31..118
e-value: 3.0E-9
score: 38.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 518..707
e-value: 3.9E-15
score: 58.1
NoneNo IPR availablePANTHERPTHR15481RIBONUCLEIC ACID BINDING PROTEIN S1coord: 472..707
NoneNo IPR availablePANTHERPTHR15481RIBONUCLEIC ACID BINDING PROTEIN S1coord: 32..231
NoneNo IPR availablePANTHERPTHR15481:SF0RNA-BINDING PROTEIN WITH SERINE-RICH DOMAIN 1coord: 32..231
coord: 472..707
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 35..115
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 520..707

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1088contigS-dermatodea_contig1088:2613..11000 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1088.587.1mRNA_S-dermatodea_contig1088.587.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1088 2613..11000 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1088.587.1 ID=prot_S-dermatodea_contig1088.587.1|Name=mRNA_S-dermatodea_contig1088.587.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=707bp
APSILSPYQRLPHTTRGAFNGSAMAQGVDGAVPAAPAQTSVVIGNLKSHV
DKEALVALCRQLGRVTSFRLTPGPTPESPATAVVDYALPEEAAGVVSHVN
GRLILGQPVTACVAISALYRQPAAPPLPQGTPSPQAAPSGTPAHATYPSG
IEQHRNINQAQDKNGGPPTYGRYPGPERTNTHEESRAPHAGSPAWERGPH
GQDQRTAERAPPHARYGESPVHNQQQQHPMWAGRPRRENGGGGASSRYVN
EAGPDPYVAPQQWQGQGERPQDEDAEGWERNGRNNYPTHRDARSEHTGYQ
PQASSGWPDGAGSRGHPPAAYGGGSAGRATPAGIPRGPAGPHKLRGDDGY
GDEDSGNISAGTMQRPAPRSIGRGMPDSGQLAWSEGPGYAAPPPAAVTAT
AAPPASVGGTEFQQEVIRAAALLLAEREVRAREDERKQGTVQTEREFPDG
PTQRYGDREATERARGGMANSSITDRRGTRSIDDADKRKREGDSRERRQR
DARGGDSHGGRTGDRGNRSRERDDGGRHREQDKEKFTDEDRARRDSRPRT
GKSSREWETSTSHTGKSYKRAESEDERRARWAGETGRAREPATSVPFNKN
WETNAADSGYYVHVEGISFSTTFTTLAKRFAAFGDVNGFKVVFNNITCRS
ADRSGDARNRSKEDASKPAVVTASTGFAFISFDDEKGMEKAIECMNNQTL
DGHVLKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf