mRNA_S-dermatodea_contig1088.587.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1088.587.1
Unique NamemRNA_S-dermatodea_contig1088.587.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1088.587.1 vs. uniprot
Match: A0A6H5JE04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE04_9PHAE)

HSP 1 Score: 280 bits (716), Expect = 9.180e-79
Identity = 303/735 (41.22%), Postives = 378/735 (51.43%), Query Frame = 1 
Query:   40 TTRGAFNGSAMAQGVDGAVPAAPAQTSVVIGNLKSHVDKEALVALCRQLGRVTSFRLT--PGPTPESPATAVVDYALPEEAAGVVSHVNGRLILGQPVTACVAISALYRQPAAPPLPQGTPSPQAAXXXXXXXXXXXXXXEQHRNINQAQD-----KNGG--PPTYGRYPGPERTNTHEESRAPHAGSPAWER---GPHGQDQRTAERAPPHARYGESPVHNQ--QQQHPMW-AGRPRRENGGGGA--SSRYVNEAGPDPYVAPQQWQGQ--GERPQDEDAEGWERNGRNNYPTHRDAR-------SEHTGYQPQASSGWPDGAGSRGHPPAAY--GGGSAGRATPAGIPR----GPAGPHKLRGDDGYGDEDSGNISAGTMQR-PAPRSIGRGMPDSGQLA-WSEGPGYAAPXXXXXXXXXXXXXXXXXTEFQQEVIRAAALLLAEREVRAREDERKQGTVQTEREFPDGPTQRY-GDREATERARGGMANSSITDRRGTRSIDDADKRKREGDSRERRQRDARGGDSHGGRTGDRGNRSRERDDGGRHREQDK--EKFTDEDRARRDSRPRTGKSSREWETSTSHTGKSYKRAESEDERRARWAGETGRA---REPATSVPFNKNWET-NAADSGYYVHVEGISFSTTFTTLAKRFAAFGDVNGFKVVFNNITCRSADRSGDARNRSKEDASKPAVVTASTGFAFISFDDEKGMEKAIECMNNQTLDGHVLKV 2121
            +T GA  GSA+A G D      PA T V+IGNLK  VDKEAL AL  QLG VT+FRL   PG  P SPAT VV+YA  E+A+ VV+HV+G+LILG+PVTA VA         APPLPQG P   +A XXXXXXXXXXXXX                KNGG  PP  G  P     N+HE++R        WER                     YG+   HNQ  QQQH  W +GRP  +  G     + RY  E G   Y A + WQ Q  G    DE A  WER  RN +P  + A        S H    PQ S  + D      H  +AY  GG   G    A +PR    G  G      DDGYGD+D   + AG M+R P P S   G+P SG+ A W++   Y  P                  +F++EV++AAALL+AERE+ ARE+ RKQG        P   T  Y G R++ +   G  +    TD R  R      K + +GD R + ++  R  DS G R G  G R+ ER    R RE+ K   +  D DR R DS   + K                      D   ++ + + G +   R+   S P    WE  + A  G+YVHV G+SFSTTFTTLAKRFAAFGDVNGFKV+FN ++C + + S   R  SKE+ +K AVVTAS+GFAFISFD E+GMEKA+ECM+ Q LDG++LKV
Sbjct:    2 STNGA--GSAIATGSDDGEARGPANTRVIIGNLKRDVDKEALKALLCQLGHVTNFRLQQPPGIDPASPATGVVEYASAEDASRVVAHVHGKLILGRPVTAWVAAPGST----APPLPQGGPPSTSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNGGRYPPAVGHNP-----NSHEDAR--------WERPXXXXXXXXXXXXXXXXXQDTYGDGLSHNQRQQQQHQSWHSGRPMPQQSGANVPIAPRYGGEGGSAHY-AERHWQDQRHGHSEADESA-AWERPDRNQFPAAQRAPMRQQPPPSFHRPTGPQTSEWYDDADSQVAHGNSAYDDGGQRRGPRGRAMMPRRASAGSVGVPPRSSDDGYGDDD---VPAGAMRRLPPPNSAPHGVPLSGRAAAWTDDAQYTMPPPISIKGE----------DFEKEVVKAAALLVAEREM-AREEARKQGKQNWSGADP---TPGYEGPRKSKKARSGSRSMGEETDERKKREPSSR-KDENDGDHRPKSKKTRR--DSSGDRHGSVGKRADERKGKARTREESKGGPQGDDRDRKREDSSRTSHKDKHRXXXXXXXXXXXXXXXXXNDPDSSKSSPKQGSSSWDRKGFNSSP----WENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETS--KRKGSKEEVTKAAVVTASSGFAFISFDKERGMEKAVECMDGQKLDGNILKV 689
[Close]
BLAST of mRNA_S-dermatodea_contig1088.587.1 vs. uniprot
Match: D8LJZ2_ECTSI (Polyphosphate kinase 2 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ2_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 5.590e-40
Identity = 148/369 (40.11%), Postives = 197/369 (53.39%), Query Frame = 1 
Query: 1039 DDGYGDEDSGNISAGTMQRPA-PRSIGRGMPDSGQLA-WSEGPGYAAPXXXXXXXXXXXXXXXXXTEFQQEVIRAAALLLAEREVRAREDERKQGTVQTEREFPDGPTQRYGDREATERARGGMANSSITDRRGTRSIDDADKRKREGDSRERRQRDARGGDSHGGRTGDRGNRSRERDDGGRHREQDK--EKFTDEDRARRDSRPRTGKSSREWETSTSHTGKSYKRAESEDERRARWAGETGRA---REPATSVPFNKNWET-NAADSGYYVHVEGISFSTTFTTLAKRFAAFGDVNGFKVVFNNITCRSADRSGDARNRSKEDASKPAVVTASTGFAFISFDDEKGMEKAIECMNNQTLDGHVLKV 2121
            DDGYGD+D   + +G M+RP  P S   G+P  G+ A W++   Y  P                  +F++EV++AAALL+AERE+ ARE+ RKQG        P       G R++ +   GG +    TD R  R      K + +GD R R ++  R  DS G R G  G R+ ER    R RE+ K   +  D DR R                               D   ++   + G +   R+   S P    WE  + A  G+YVHV G+SFSTTFTTLAKRFAAFGDVNGFKV+FN ++C + + S   R  SKE+ +K AVVTAS+GFAFISFD+E+GMEKA+ECM+ Q LDG++LKV
Sbjct:   19 DDGYGDDD---VPSGAMRRPPXPNSASHGVPLPGRAAAWTDDAEYTMPPPISIKGE----------DFEKEVVKAAALLVAEREM-AREEARKQGKQDWSGVDP--TPGHEGPRKSKKARSGGRSMGEETDERKKREPSSR-KDENDGDHRPRSKKTRR--DSSGDRHGSVGKRADERKGKTRTREESKGGPQGDDRDRKREXXXXXXXXXXXXXXXXXXXXXXXXXXXRDNDLDSSKSLPKQGSSTWDRKDFNSSP----WENQHQATGGFYVHVGGLSFSTTFTTLAKRFAAFGDVNGFKVIFNKVSCSAEETS--KRKGSKEEVTKAAVVTASSGFAFISFDNERGMEKAVECMDGQKLDGNILKV 362
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1088.587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JE04_9PHAE9.180e-7941.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJZ2_ECTSI5.590e-4040.11Polyphosphate kinase 2 family protein n=1 Tax=Ecto... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1088contigS-dermatodea_contig1088:2613..11000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-06_007530.1
Hectar predicted targeting categoryother localisation
Exons5
Model size2122
Cds size2121
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1088.587.1prot_S-dermatodea_contig1088.587.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1088 2613..11000 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924178.063602-CDS-S-dermatodea_contig1088:2612..31831622924178.063602-CDS-S-dermatodea_contig1088:2612..3183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 2613..3183 -
1694079071.454197-CDS-S-dermatodea_contig1088:2612..31831694079071.454197-CDS-S-dermatodea_contig1088:2612..3183Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 2613..3183 -
1622924178.0731826-CDS-S-dermatodea_contig1088:3390..45911622924178.0731826-CDS-S-dermatodea_contig1088:3390..4591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 3391..4591 -
1694079071.4769387-CDS-S-dermatodea_contig1088:3390..45911694079071.4769387-CDS-S-dermatodea_contig1088:3390..4591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 3391..4591 -
1622924178.0836635-CDS-S-dermatodea_contig1088:10135..102471622924178.0836635-CDS-S-dermatodea_contig1088:10135..10247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 10136..10247 -
1694079071.4940095-CDS-S-dermatodea_contig1088:10135..102471694079071.4940095-CDS-S-dermatodea_contig1088:10135..10247Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 10136..10247 -
1622924178.093154-CDS-S-dermatodea_contig1088:10542..106361622924178.093154-CDS-S-dermatodea_contig1088:10542..10636Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 10543..10636 -
1694079071.5120852-CDS-S-dermatodea_contig1088:10542..106361694079071.5120852-CDS-S-dermatodea_contig1088:10542..10636Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 10543..10636 -
1622924178.1013978-CDS-S-dermatodea_contig1088:10857..110001622924178.1013978-CDS-S-dermatodea_contig1088:10857..11000Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 10858..11000 -
1694079071.5233808-CDS-S-dermatodea_contig1088:10857..110001694079071.5233808-CDS-S-dermatodea_contig1088:10857..11000Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1088 10858..11000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1088.587.1

>prot_S-dermatodea_contig1088.587.1 ID=prot_S-dermatodea_contig1088.587.1|Name=mRNA_S-dermatodea_contig1088.587.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=707bp
APSILSPYQRLPHTTRGAFNGSAMAQGVDGAVPAAPAQTSVVIGNLKSHV
DKEALVALCRQLGRVTSFRLTPGPTPESPATAVVDYALPEEAAGVVSHVN
GRLILGQPVTACVAISALYRQPAAPPLPQGTPSPQAAPSGTPAHATYPSG
IEQHRNINQAQDKNGGPPTYGRYPGPERTNTHEESRAPHAGSPAWERGPH
GQDQRTAERAPPHARYGESPVHNQQQQHPMWAGRPRRENGGGGASSRYVN
EAGPDPYVAPQQWQGQGERPQDEDAEGWERNGRNNYPTHRDARSEHTGYQ
PQASSGWPDGAGSRGHPPAAYGGGSAGRATPAGIPRGPAGPHKLRGDDGY
GDEDSGNISAGTMQRPAPRSIGRGMPDSGQLAWSEGPGYAAPPPAAVTAT
AAPPASVGGTEFQQEVIRAAALLLAEREVRAREDERKQGTVQTEREFPDG
PTQRYGDREATERARGGMANSSITDRRGTRSIDDADKRKREGDSRERRQR
DARGGDSHGGRTGDRGNRSRERDDGGRHREQDKEKFTDEDRARRDSRPRT
GKSSREWETSTSHTGKSYKRAESEDERRARWAGETGRAREPATSVPFNKN
WETNAADSGYYVHVEGISFSTTFTTLAKRFAAFGDVNGFKVVFNNITCRS
ADRSGDARNRSKEDASKPAVVTASTGFAFISFDDEKGMEKAIECMNNQTL
DGHVLKV
back to top

mRNA from alignment at S-dermatodea_contig1088:2613..11000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1088.587.1 ID=mRNA_S-dermatodea_contig1088.587.1|Name=mRNA_S-dermatodea_contig1088.587.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=8388bp|location=Sequence derived from alignment at S-dermatodea_contig1088:2613..11000- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACCCTCAATCTTGTCCCCCTACCAAAGACTCCCACACACAACGCGCGG
CGCGTTCAACGGATCCGCCATGGCGCAGGGGGTTGATGGAGCCGTGCCTG
CCGCTCCTGCCCAAACAAGCGTTGTCATCGGCAATCTAAAAAGGTAGAGG
CACCTGTTTTCATTCCCTGAACAAAAAAAGCCCGAGTCTGTCTTGTTGTG
TTTAGTCTTGTATGTAGGCTCCCACGGCTTGGGTAGTTCGATACGAGCGA
AGCAGGCTCTCACACGGCGCGCCGTGGGCGCGTGTATTGCGGCAACGAAT
CGAAAGCGGGGCATTTGCGGCGCCTGAACCCCTCCCTCGCTTTCCTCTAC
TTCCTAATTTCCAGTCACGTCGACAAAGAAGCGCTGGTGGCTCTGTGCAG
ACAGCTCGGCCGTGTCACGTCTTTCAGGCTCACACCCGGACCGACCCCCG
AATCCCCTGTAAGTGAGCGGAGGAAGCTGTTTTTGCGCTATGATATGATA
TCATACACATGCGCGCCTGGAACAAGTTATCTGGGACATCAGCGTGATTT
GTGCGCGCCATGGTCTGGCTTCTGTGCATGGCTGAGCTGGTGTTAGTCGA
TTCATCCCGGCCAAGTCTCGACTCTCTTGCATATATGATGTTGAAAAGGT
GGTCGATATGATGTGACACATCCCTGAGTTTACCACGAAATTCCACCACC
TGTGAGACCAATCGCCTCTGCGCGTTGTGGCTTCTTTGGGTCCACACCAA
TAGGCTACTGCTGTGGTGGACTACGCGCTGCCGGAAGAAGCCGCAGGAGT
AGTTTCTCATGTCAACGGACGCCTCATCCTCGGACAACCTGTCACCGCCT
GCGTGGCAATCTCAGGTTAGGCCAAGCAGATACTACTGCTACTACTGCAG
CGTGTTGAACACCTTTCAGACTGATGGTGTACTACAGCTGTAGTGTACAA
GTTCATACTGGGGTATCCTGTGTGCCGGTGTGCAGTGCGCAGGTGTGCAC
ACTGCACACCGACCAAACGGGCTGACTTTTGATACCTTGGAAGGCATAGT
CCGGCGATGCCATCGTCAAGGGACTCGTGTCAGTCGCCGTCGGCAATGAT
GTTTGCAGCGAACCTCCTGTACCTCTCAATTTACAGTAGAAGCAACCGCC
GACCCTTTGGCAGACATATATCTGGTGCGGCGATGGACACAACTATTGAT
TTATGTACAATAGACCTACAGTAGTACCTTTATAGAGCTATTATAGAGCT
AGAGCTCTATGATATAATAGAACTCAAGTTTTTAGTGTAGCTCACAAGAT
CGTAAAGCTACCGAAATATCCCCTTGTTCGCAGTGATTAAACGAGGTGTC
ATTTCAGGCGCCGGTTTTTGGGTTCTTGTCGGTTGTCAGGGATGCCTTTT
CAACTTGCAGCGCAGAACTGATGTTCACAGGGATGGGGGGAACCCAGCAC
CGACCTAAGAACCTACCGATTATGACCGGAAATCAGCTTTTGACAGAACC
TACCGGTTATAACCCAAAAAACCGGGGATGAAAACGCCCGTCCCCGGGGT
TTCCAAGCCTTTTCTGTTTCGTACGCTGCGGCTGCTTGTAGCATGGTTGC
ACAGCCCCAAACGTGTTGTGATTACATGCTGAAGTGTATTTTTCGTAAAG
AGGGGTGTTTGTTTTGCGTTTTTGCACCTTGTTTGATGGTGACCGACAAC
AATTGCTCAGCCGAAAAAAGGCAAAAAGGGCAGGCTTGGGGGGGAGGGGG
CCCAGTATAACCCCGCTGTTCCATATAACCTACCGGGCAAGGTTGGAACC
GGGTATAACCGGGTACCGGGTAACTGTTCCCCCCATCCCTGGTTCAAATT
ACGCTATTGTGAGTTTTTTTGTAGACGAGAGGCCCGAAAACTGGCAGCGC
AATCAGTATGATAGGGCAGGCCAATGACCCCCCCCCCCCCATCAGGTAAC
CGCAGGCCAGGCAAAATTCGTCCGAGGGCACGAATGCCCCGAGAGCGTCG
CCGTACGCAAAGGGGGCGCCGGACTGAGCATCAGTTTGTAGTGTCGTGTA
TACTGCAGTATACTCGAACTAATGTACGCCAAATGCCAAATGCAACCGAA
CAGAGTGCCCCATGTAGGGCACAACAAGAGCGCTCTGATATGCCCGTTGG
AACACAGAGTAGTGTAAACCGCCCGCCCTCTTGGGCCACCCATGCGTAGG
CGAAGCTCCAAACCTCCAACCCGTCAAGGCACCCGACGTCCACATGCTGG
CCTTGCTCGATGCTATGTGCTATATACGATACTCTTTCGAGGATTGTGAT
GCTACGTAGAGCACTTGGTACCAGTGTGCGTAGTCGAATATAGAAGAGTA
CGACCTTGCTGCCGGGCCATCCTCGCTGGCGGGTTGATGGTGGGTGCCGT
TGACCGAGACGCTCTGTTGCGCCCGTACCTTGCCATATTGTATCGGTACT
CCGGGAGTCAGTGTGCAACTTCTAGTGGTCGAGACGTATCCAAGTACAAG
TATAGCGTCCCGTGAAGTTCAACTGCGGTATTATAGTGTCGATCGTAGTC
GCGTTGTCGTCCACGGAGACCCTACAGTACCGCAGCAGCGGAGCGTATCT
ACCCGAAACCAGCGATCAGGGTTCAAGCCCAATACGATCCCCCCACTCCA
ACGTTGGTCGCTGTTGGTGAATGTGACCACAAGACAGACGGGGGCAATGC
AGCAAACACAAAGACGTGTAACATTGTATCGTTTCTTTTGATGATTTGCG
TGTCTATCGTGCTCATTGAGGTGGTGTGTAGTGCGAAAAACATGGCACGT
CTACTGGGCGCATCTCCTGCAGGTCAGGCCGCTCGCGCGTCTGAAAGTAT
GTTTTAGCGCCACATCTGCCACGGTGGCCGCCCGAGAGGCGTGGAGAGGA
TGTTCAAACTGCGCACCAAACATAGATTCCTGGGTCACTTCAAAGAACCT
CACATGCATGGGCTTCTGGTGCAGATCTATGCGTCTTACGGTCTGTGGCG
TAGCGTGAGGTGACCGCGCGCAAAGGTAGCCCCTGCCTTCCACAGAAATG
GCCGCGTGGCTACAAAAACTAAAGAGGTGGCCCCTCAGCGACTGCCCTCC
GTTGTGTCCGAGCCCGAACACAAATGTCGATGGTTTTTACAAAGCACGTC
CGAGGTGCAATCCTTGCTCGCTCGAGTAGAAGATTTCGGGCTTGCTCGCC
TTCGTTCGGGTTAGATCTGCGCACGGCGGTTAAAACCAGGGATGCGCATA
ACTGGGTTTGAGTTATATTGAGTTATAAATATTTTGGCCAGTAATGTTTG
AAGCGGCCAGTTATGTTGGGGCCCGAAGGGCCCCTAAAAAAATGCCGATA
TTTGTTTGGAAATCCCTATTTGTGGGCACACAGCCAGCTCCACACAGACA
GCTCGCCCAGTGCAACAGAGGGAAGTCAATGATGTTGCGATGTTACTTCA
GTGTAATCCCGTATGTTCATGTAAAAACAAAGTTGCACATCGAAGGGAGC
CACAGAAAAGCAAAATTAAAAAAAATCACGTGCGTACATACGCATAAAAA
AAAAAATGCACATGGAAGGAAGTTCCACATCGCCGGCTCCAGCTGGCGAG
TTATGTGAGTTTTTTTTTCTTTCCCCACAACTGAGGCATAACTCAGTTAG
TTACGTGTCCCAAACCAAGTTATGCGCATCCCTGGTTAAAACCTCTTTAT
GTTTGCCCTTGCCGCCTCCCCGCCTTTTCACTCGAAATTTAAGGCCTGTG
GAACCTCCTATTTGCTCACCCTCGTTGAACTATAGTAGCAACTCGGTGCA
TGCCGTGATACGTGTGATGTGTATTGGCATTCCCTGTCGTCGTTCTTTGA
ACCGTGAATGACAACGGATGCCCCATCACAGGCGAAGTTCAGGTCTCCCC
GAGCCTCTAGAGTGGTTCAGTTAGTGCCGATCCTTGACGACTCTCTTTGC
TTCTTGCTACTTAAAGACGTGGGAGTAACCCGTGGTGTCTTGAGTGCCCA
GTCGATATTGTGGGTGAACATTAGCGATGACGATTTTGAAGCTGACAGAT
AACTAAAGGGTGGGATGTACTGATGTACTTACGTTTTAAGGCATGTCGCG
TCCAAACGGATGTAGACCACGCATCTCACCAATGCCGGGACGGAGCGATA
TAGATGGCTGGCCCGGCCAGGCTGCGTTTCGCCAGGATGATCCAAGCTGC
TTGAAATCATCCTTGCGTTTGCGACGCCAAACCTATATGCCATGGGTTGA
TTAGACATACTGGGTAAACAAATTTCGCGTTCATTAGGCGTGACTACATG
CCCGAGTACCGCAAAGGGACGTTTGATCTCCGTGCGTGCCCCATTCACAC
AACATTATCGACTGCGTGTGTGTGATACACTCAAGACTATACTCTGGTCA
TTAGTACTCCTGGCGGAGTACCCATAAGGAAATGGTGGCTCTAGGGCTTT
TCCCAACAATTCACCCGGGTGTCTTTCAGGATGTGACGCGTTCACCCCTT
TGGGCTGAGCCAAGACTCTTCGACTGATGTCTCTGAGCTCACAGGGCATA
CTGCATGGAGTTCTCCATGTCCTGTTGTTTTACAGCCCCATTCCGCAAGA
GCAATCCTTACCTCAACCGACCCCACCTCGAACCTCCAAGGCAGGGGGGG
CTGTGGGTCTACGTTGAATGGGGGGCGATCTCAAGGGGGGGGCATACTAC
GCTGAAAATCACCAATAATGTGTACCAGTGGTAGTCGAGACAAATGTTCT
TGGATCACAAAGCACATCAAAATTATACCACCAAGATTTCCCCCGGACTA
TAGGCATTTACACAATATCCTATAGAAATACACATAACATGCAACGACGG
CATTGTACCTATAACCTGAACCTCCATAGGTGTAGCTTGGACTACCTTTC
CTTCCTTAAAATAGGTGGGACCGCAACGCTCGCTTTGTGTTTTTGATATC
ATGTTATTTTTGAAGGAGGGGGCTTATAAGAGCGTTGAGGCTATGGCCGC
ACTTGGAAAAACAGGAATTGAGTTCTGGTCTCGGACGTTCCTATTAGTAG
CGCCAAGACCGAAATGCTCAGTGTTGGCGATTGGCGCCGCCTATGGTGCC
TGACACACCGGCGGTTGCCAGTAGCCAACTCAGGCAGTTAGGCGCGGTGA
GCCAGCCGCCCGCTTTCGAGCCGGATCGGTTTCTGGGGCCCTGGGCCGGT
GATTTACTCGTCCGCACAACATGGAATCCGAGGTGGACCAGGACGCTGAT
TGTGTAACGCACAAAGGCACAGGTTGACGTGCTAGCACACGGTGTGGTCT
CTCCAAGGTTGATATTGTGCTCGTTGGTCCAGACGGCCCTCTCTCCTTTG
CATTCGGGCACGCGGTGCTTCGCGTTGTGCGCGTTGTGACTCTATTGCTG
TTGAGAATTTTACCGCGAAGTTGGCTCACGTACCGCTCGAACTATACGCT
TCGAATGTTACAGGTCTTTGTAGGCCGCCATCCGGGTGTTTGTTTGCGGA
ACCCTTTTGACAACGCCAGTAGACACAGCTTTGCTATCGGCCGCGTGAAG
GAATTGTAGGGTAAGGTGGCCCCACTGTGGCGTGAACGGTGCTAGCTGCC
ACTCGCCGTGCGGATCAATTGTTCGCTCCACTAGCACCAAGGTCATAGCT
CGCCGGGGCTTCCGAAGGGCGTGACAAAGAGGCTTGGCCGATGGTTCTTG
CCTGTGGCTTGACGGTTATGGCCCCTGTCAGACAGAGGTTTTCATTGACG
TTGAAATTTTTCTGCGTCCGCGGCGAGAATAGGTACACATCGCAAACCGG
TGTGGCGTCCCGGACGCGACTTCACCTCGACCGCAACGTGCAGTTGAGTT
TCGTTCACACGAGCGTCTACCTATAGCCTATCATTTACAAGTATTCGGTA
TCTACCCAGATCCCTCGTTGGCAATGACGCGGAGAAATCAACCCCTTCTG
GACTTCGGACGCCCCCCTTTTTGAGAGGCGCTACTGTTGTCGAGCAGCTT
CGTCGCGATGCGCGTGAAGCAGCGCAACTCACAGAAACGATCAGGCTACT
TCATACTAACCGGCCCCAAGCGGAGAGACTATGCTCACCTTACGTTTTCT
TTTTATCGGTTGCCTTTCAAGCCGTTTCGCACGCTGACCCTAACAACCTG
TCAGGAGCAAAGCAAACTTGTAACCGAAACGGCGAGAGCGATGGCGATCA
CCGTCCCTGCCATCTATCAAGAGGGCCCCGCATGTTCTTGGTGATGCCTT
GATTAGGGCACGCGATTAGCAATATAGCCACAAAACTGTTGTTGGCTTCC
GAAGATGCACGCTTTCAAGACTCATCCGCGCGGCAGCTAACTTGCCCGTC
ATCATGACGGCCGGTCCTCTCTCCCCTCTCGTGCCCGTGACTCTCCGATC
CCGCAGGAGCACTGTATCGCCAGCCGGCAGCACCACCTCTTCCTCAAGGA
ACCCCATCACCTCAAGCTGCACCTAGCGGGACACCAGCCCACGCCACATA
CCCCAGCGGAATCGAACAACACAGAAACATCAACCAAGCCCAAGATAAAA
ACGGTGGCCCTCCAACGTACGGCAGATACCCAGGGCCAGAGCGCACGAAC
ACCCACGAGGAATCGCGGGCGCCCCACGCTGGCTCCCCAGCATGGGAACG
CGGTCCTCACGGTCAGGACCAACGTACTGCCGAGCGCGCCCCGCCTCACG
CAAGGTACGGCGAGTCTCCCGTGCACAATCAGCAACAGCAGCATCCGATG
TGGGCCGGGCGCCCGCGCAGGGAAAACGGGGGCGGTGGTGCTTCCTCGAG
GTACGTGAATGAAGCTGGTCCAGACCCTTATGTGGCGCCACAACAATGGC
AGGGCCAAGGCGAGAGACCCCAAGACGAAGATGCTGAAGGGTGGGAGCGC
AACGGAAGAAACAACTACCCCACGCACCGCGACGCGCGTTCGGAACACAC
AGGTTACCAGCCACAGGCCTCGTCTGGCTGGCCAGATGGCGCAGGCTCTC
GTGGTCATCCTCCTGCCGCTTACGGTGGTGGTAGCGCGGGCCGGGCGACG
CCCGCAGGTATCCCAAGGGGCCCTGCTGGCCCTCATAAACTCCGTGGCGA
TGATGGGTACGGCGACGAAGATTCCGGTAATATCAGCGCTGGGACGATGC
AGAGGCCTGCCCCTCGCAGCATTGGCCGCGGTATGCCGGATTCTGGTCAG
CTGGCCTGGAGCGAGGGGCCGGGGTACGCAGCTCCCCCACCGGCAGCAGT
AACAGCGACAGCAGCTCCGCCTGCCTCCGTTGGCGGCACAGAATTTCAGC
AGGAGGTGATTCGAGCGGCGGCGCTTCTGCTGGCCGAGCGAGAGGTCCGA
GCCCGCGAAGACGAGCGCAAGCAGGGAACAGTGCAGACAGAGCGAGAGTT
CCCAGATGGCCCCACTCAACGGTACGGAGACCGGGAGGCAACCGAGAGGG
CACGCGGCGGCATGGCAAACAGCAGCATCACGGATCGCCGCGGCACCCGC
TCAATCGACGATGCAGACAAGCGCAAGCGGGAAGGAGACAGCCGGGAGCG
CCGTCAACGTGACGCCCGCGGCGGTGACTCTCACGGCGGCCGCACGGGTG
ATCGAGGTAAGTGGGAGAAGGACGCCGCTGTAGAAGGTCGCCGCGATGAC
AAGAGGGCGCGTCGCGACGACAGCCCTCACAGGGCCGGTGTCGGCCGGAC
TGACGACAGAGCGGGCAGCGGTAGGGCTGACGGTAAGCCAGGCGACCGGC
ACCCATCATCGAACGGGAAACGCACCGAAGATGCTAGAGGCAACCCGATG
CCACGTGCTCGGAACAGCAGGAGCAGGGAGCGAGACGACGGAGGCAGGCA
CCGAGAGCAAGACAAGGAGAAGTTCACGGATGAAGACAGAGCGAGGCGTG
ACAGCCGCCCGCGCACGGGTAAGAGCTCCAGGGAATGGGAAACCTCTACT
TCACACACGGGCAAGTCCTACAAACGCGCCGAATCCGAGGACGAGAGGCG
AGCGAGGTGGGCAGGCGAAACGGGCAGAGCCCGAGAGCCCGCGACCAGTG
TTCCATTCAACAAGAATTGGGAGACCAATGCGGCGGACAGCGGCTACTAC
GTGCACGTGGAGGGCATATCCTTCTCGACTACATTCACGACGCTGGCCAA
GCGGTTCGCAGCCTTCGGCGACGTGAACGGGTTCAAGGTGGTCTTCAACA
ACATCACCTGTCGCTCTGCCGACCGCAGCGGTGACGCCCGCAATCGGTCT
AAGGAGGATGCGAGCAAGCCAGCGGTGGTCACGGCGAGCACTGGTTTCGC
CTTCATCAGCTTCGATGATGAAAAAGGCATGGAAAAGGCGATCGAGTGCA
TGAACAACCAAACTCTGGACGGCCACGTACTGAAGGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1088:2613..11000-

>mRNA_S-dermatodea_contig1088.587.1 ID=mRNA_S-dermatodea_contig1088.587.1|Name=mRNA_S-dermatodea_contig1088.587.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4242bp|location=Sequence derived from alignment at S-dermatodea_contig1088:2613..11000- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCACCCTCAATCTTGTCCCCCTACCAAAGACTCCCACACACAACGCGCGG
CGCGTTCAACGGATCCGCCATGGCGCAGGGGGTTGATGGAGCCGTGCCTG
CCGCTCCTGCCCAAACAAGCGTTGTCATCGGCAATCTAAAAAGGCACCCT
CAATCTTGTCCCCCTACCAAAGACTCCCACACACAACGCGCGGCGCGTTC
AACGGATCCGCCATGGCGCAGGGGGTTGATGGAGCCGTGCCTGCCGCTCC
TGCCCAAACAAGCGTTGTCATCGGCAATCTAAAAAGTCACGTCGACAAAG
AAGCGCTGGTGGCTCTGTGCAGACAGCTCGGCCGTGTCACGTCTTTCAGG
CTCACACCCGGACCGACCCCCGAATCCCCTTCACGTCGACAAAGAAGCGC
TGGTGGCTCTGTGCAGACAGCTCGGCCGTGTCACGTCTTTCAGGCTCACA
CCCGGACCGACCCCCGAATCCCCTGCTACTGCTGTGGTGGACTACGCGCT
GCCGGAAGAAGCCGCAGGAGTAGTTTCTCATGTCAACGGACGCCTCATCC
TCGGACAACCTGTCACCGCCTGCGTGGCAATCTCAGGCTACTGCTGTGGT
GGACTACGCGCTGCCGGAAGAAGCCGCAGGAGTAGTTTCTCATGTCAACG
GACGCCTCATCCTCGGACAACCTGTCACCGCCTGCGTGGCAATCTCAGCA
CTGTATCGCCAGCCGGCAGCACCACCTCTTCCTCAAGGAACCCCATCACC
TCAAGCTGCACCTAGCGGGACACCAGCCCACGCCACATACCCCAGCGGAA
TCGAACAACACAGAAACATCAACCAAGCCCAAGATAAAAACGGTGGCCCT
CCAACGTACGGCAGATACCCAGGGCCAGAGCGCACGAACACCCACGAGGA
ATCGCGGGCGCCCCACGCTGGCTCCCCAGCATGGGAACGCGGTCCTCACG
GTCAGGACCAACGTACTGCCGAGCGCGCCCCGCCTCACGCAAGGTACGGC
GAGTCTCCCGTGCACAATCAGCAACAGCAGCATCCGATGTGGGCCGGGCG
CCCGCGCAGGGAAAACGGGGGCGGTGGTGCTTCCTCGAGGTACGTGAATG
AAGCTGGTCCAGACCCTTATGTGGCGCCACAACAATGGCAGGGCCAAGGC
GAGAGACCCCAAGACGAAGATGCTGAAGGGTGGGAGCGCAACGGAAGAAA
CAACTACCCCACGCACCGCGACGCGCGTTCGGAACACACAGGTTACCAGC
CACAGGCCTCGTCTGGCTGGCCAGATGGCGCAGGCTCTCGTGGTCATCCT
CCTGCCGCTTACGGTGGTGGTAGCGCGGGCCGGGCGACGCCCGCAGGTAT
CCCAAGGGGCCCTGCTGGCCCTCATAAACTCCGTGGCGATGATGGGTACG
GCGACGAAGATTCCGGTAATATCAGCGCTGGGACGATGCAGAGGCCTGCC
CCTCGCAGCATTGGCCGCGGTATGCCGGATTCTGGTCAGCTGGCCTGGAG
CGAGGGGCCGGGGTACGCAGCTCCCCCACCGGCAGCAGTAACAGCGACAG
CAGCTCCGCCTGCCTCCGTTGGCGGCACAGAATTTCAGCAGGAGGTGATT
CGAGCGGCGGCGCTTCTGCTGGCCGAGCGAGAGGTCCGAGCCCGCGAAGA
CGAGCGCAAGCAGGGAACAGTGCAGACAGAGCGAGAGTTCCCAGATGGCC
CCACTCAACGGTACGGAGACCGGGAGGCAACCGAGAGGGCACGCGGCGGC
ATGGCAAACAGCAGCATCACGGATCGCCGCGGCACCCGCTCAATCGACGA
TGCAGACAAGCGCAAGCGGGAAGGAGACAGCCGGGAGCGCCGTCAACGTG
ACGCCCGCGGCGGTGACTCTCACGGCGGCCGCACGGGTGATCGAGGTAAC
ACTGTATCGCCAGCCGGCAGCACCACCTCTTCCTCAAGGAACCCCATCAC
CTCAAGCTGCACCTAGCGGGACACCAGCCCACGCCACATACCCCAGCGGA
ATCGAACAACACAGAAACATCAACCAAGCCCAAGATAAAAACGGTGGCCC
TCCAACGTACGGCAGATACCCAGGGCCAGAGCGCACGAACACCCACGAGG
AATCGCGGGCGCCCCACGCTGGCTCCCCAGCATGGGAACGCGGTCCTCAC
GGTCAGGACCAACGTACTGCCGAGCGCGCCCCGCCTCACGCAAGGTACGG
CGAGTCTCCCGTGCACAATCAGCAACAGCAGCATCCGATGTGGGCCGGGC
GCCCGCGCAGGGAAAACGGGGGCGGTGGTGCTTCCTCGAGGTACGTGAAT
GAAGCTGGTCCAGACCCTTATGTGGCGCCACAACAATGGCAGGGCCAAGG
CGAGAGACCCCAAGACGAAGATGCTGAAGGGTGGGAGCGCAACGGAAGAA
ACAACTACCCCACGCACCGCGACGCGCGTTCGGAACACACAGGTTACCAG
CCACAGGCCTCGTCTGGCTGGCCAGATGGCGCAGGCTCTCGTGGTCATCC
TCCTGCCGCTTACGGTGGTGGTAGCGCGGGCCGGGCGACGCCCGCAGGTA
TCCCAAGGGGCCCTGCTGGCCCTCATAAACTCCGTGGCGATGATGGGTAC
GGCGACGAAGATTCCGGTAATATCAGCGCTGGGACGATGCAGAGGCCTGC
CCCTCGCAGCATTGGCCGCGGTATGCCGGATTCTGGTCAGCTGGCCTGGA
GCGAGGGGCCGGGGTACGCAGCTCCCCCACCGGCAGCAGTAACAGCGACA
GCAGCTCCGCCTGCCTCCGTTGGCGGCACAGAATTTCAGCAGGAGGTGAT
TCGAGCGGCGGCGCTTCTGCTGGCCGAGCGAGAGGTCCGAGCCCGCGAAG
ACGAGCGCAAGCAGGGAACAGTGCAGACAGAGCGAGAGTTCCCAGATGGC
CCCACTCAACGGTACGGAGACCGGGAGGCAACCGAGAGGGCACGCGGCGG
CATGGCAAACAGCAGCATCACGGATCGCCGCGGCACCCGCTCAATCGACG
ATGCAGACAAGCGCAAGCGGGAAGGAGACAGCCGGGAGCGCCGTCAACGT
GACGCCCGCGGCGGTGACTCTCACGGCGGCCGCACGGGTGATCGAGGTAA
CAGGAGCAGGGAGCGAGACGACGGAGGCAGGCACCGAGAGCAAGACAAGG
AGAAGTTCACGGATGAAGACAGAGCGAGGCGTGACAGCCGCCCGCGCACG
GGTAAGAGCTCCAGGGAATGGGAAACCTCTACTTCACACACGGGCAAGTC
CTACAAACGCGCCGAATCCGAGGACGAGAGGCGAGCGAGGTGGGCAGGCG
AAACGGGCAGAGCCCGAGAGCCCGCGACCAGTGTTCCATTCAACAAGAAT
TGGGAGACCAATGCGGCGGACAGCGGCTACTACGTGCACGTGGAGGGCAT
ATCCTTCTCGACTACATTCACGACGCTGGCCAAGCGGTTCGCAGCCTTCG
GCGACGTGAACGGGTTCAAGGTGGTCTTCAACAACATCACCTGTCGCTCT
GCCGACCGCAGCGGTGACGCCCGCAATCGGTCTAAGGAGGATGCGAGCAA
GCCAGCGGTGGTCACGGCGAGCACTGGTTTCGCCTTCATCAGCTTCGATG
ATGAAAAAGGCATGGAAAAGGCGATCGAGTGCATGAACAACCAAACTCTG
GACGGCCACGTACTGAAGGTGCAGGAGCAGGGAGCGAGACGACGGAGGCA
GGCACCGAGAGCAAGACAAGGAGAAGTTCACGGATGAAGACAGAGCGAGG
CGTGACAGCCGCCCGCGCACGGGTAAGAGCTCCAGGGAATGGGAAACCTC
TACTTCACACACGGGCAAGTCCTACAAACGCGCCGAATCCGAGGACGAGA
GGCGAGCGAGGTGGGCAGGCGAAACGGGCAGAGCCCGAGAGCCCGCGACC
AGTGTTCCATTCAACAAGAATTGGGAGACCAATGCGGCGGACAGCGGCTA
CTACGTGCACGTGGAGGGCATATCCTTCTCGACTACATTCACGACGCTGG
CCAAGCGGTTCGCAGCCTTCGGCGACGTGAACGGGTTCAAGGTGGTCTTC
AACAACATCACCTGTCGCTCTGCCGACCGCAGCGGTGACGCCCGCAATCG
GTCTAAGGAGGATGCGAGCAAGCCAGCGGTGGTCACGGCGAGCACTGGTT
TCGCCTTCATCAGCTTCGATGATGAAAAAGGCATGGAAAAGGCGATCGAG
TGCATGAACAACCAAACTCTGGACGGCCACGTACTGAAGGTG
back to top